HHsearch 1.5 NAME c6et5b_ FAM FILE c6et5b_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6et5b_.a3m DATE Sat Apr 14 08:20:56 2018 LENG 58 match states, 58 columns in multiple alignment FILT 19 out of 23 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.2 EVD 0.4185 -0.1041 SEQ >ss_dssp CTTCSSSGGGHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCSSCCCSCCSCC >sa_dssp EEEEEEDEDEDDEEDCDEECEDDDEEEEDDDDDEEEEDCCEDDEECDEDEEDCEEEDE >ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC >ss_conf 9741112134202014679999999999999999999984476533000645385659 >Consensus xxxxxxxxWkiWllfDPRrxlVaxxvfLxxLAlxIHfiLLsTxrfNWLegxxxapxax >c6et5b_ ATEYRTASWKLWLILDPRRVLTALFVYLTVIALLIHFGLLSTDRLNWWEFQRGLPKAA >UniRef50_C5SDP4(6-53:64) Antenna complex alpha/beta subunit n=3 Tax=Chromatiaceae RepID=C5SDP4_CHRVI E=6e-09 s/c=1.29 id=55% cov=84% --------WKIWLLVDPRRILIAVFAFLTVLGLAIHMILLSTAEFNWLE--DGVPAAT >UniRef50_P80102(2-47:52) Light-harvesting protein B800/830/1020 alpha-1 chain (Fragment) n=2 Tax=Ectothiorhodospiraceae RepID=LHA1_ECTHL E=2e-07 s/c=1.24 id=43% cov=81% --------WRIWKVFDPRRILIATAIWLIIIALTIHVILMTTERFNWLEGAPAA---- >UniRef50_Q6XBJ8(4-49:67) Alpha subunit of light-harvesting 1 complex n=1 Tax=Roseospirillum parvum RepID=Q6XBJ8_9RHIZ E=5e-07 s/c=1.20 id=56% cov=71% ---------KVWLMFDPRSTLVALAAFLVVLALLIHFLCLGHDRFNWLE--------- >UniRef50_B3Q7A9(2-51:63) Antenna complex alpha/beta subunit n=4 Tax=Rhizobiales RepID=B3Q7A9_RHOPT E=3e-11 s/c=1.39 id=49% cov=88% --------WRIWLLFDPRRALVLLFVFLFGLAIIIHFILLSTSRFNWLDGPRAAKAAS >UniRef50_P51756(2-51:67) Light-harvesting protein B-870 alpha chain n=3 Tax=Proteobacteria RepID=LHA1_RHOGE E=4e-10 s/c=1.32 id=37% cov=88% --------WRIWRLFDPMRAMVAQAVFLLGLAVLIHLMLLGTNKYNWLDGAKKAPVAT >UniRef50_C5SDQ1(6-53:66) Antenna complex alpha/beta subunit n=2 Tax=Allochromatium vinosum RepID=C5SDQ1_CHRVI E=8e-09 s/c=1.28 id=35% cov=83% --------YKIWLAFDPRMALIGLGAFLFALALFIHYMLLRSPEFDWLLGPDYAP--- >UniRef50_P80101(2-46:47) Light-harvesting protein B800/850/890 alpha-2 chain (Fragment) n=2 Tax=Halorhodospira halophila SL1 RepID=LHA2_HALHL E=1e-07 s/c=1.28 id=52% cov=72% --------WRMWKILDYRRTVVLAHVGMAVLALLIHFILLSTESFNWLE--------- >UniRef50_P80103(2-47:65) Light-harvesting protein B800/830/1020 alpha-2 chain n=1 Tax=Halorhodospira halochloris RepID=LHA2_ECTHL E=1e-08 s/c=1.33 id=32% cov=81% --------WKLWKFVDFRMTAVGFHIFFALIAFAVHFACISSERFNWLEGAPAA---- >UniRef50_Q3J1A4(5-49:58) Light-harvesting protein B-875 alpha chain n=21 Tax=Proteobacteria RepID=LHA1_RHOS4 E=2e-08 s/c=1.34 id=46% cov=79% --------YKIWMIFDPRRVFVAQGVFLFLLAVMIHLILLSTPSYNWLEISAA----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1000 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 Y 4 * * * * * * * * * * * * * * * * * * * 0 4 0 * * * * * * 1000 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1000 0 0 T 6 * * * * * * * * * * * * * * * * 0 * * * 6 0 * * * * * * 1000 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1000 0 0 W 9 * * * * * * * * * * * * * * * * * * 301 2409 9 0 * * * * * * 2379 0 0 K 10 * * * * * * * * 617 * * * * * 1523 * * * * * 10 0 * * * * * * 2421 0 0 L 11 * * * * * * * 1040 * 1953 3226 * * * * * * 2751 * * 11 0 * * * * * * 2421 0 0 W 12 * * * * * * * * * * * * * * * * * * 0 * 12 0 * * * * * * 2421 0 0 L 13 * * * * * * * * 1765 1022 2765 * * * 3915 * * * * * 13 0 * * * * * * 2421 0 0 I 14 3692 * * * 3226 * * 1839 * 1293 4117 * * * * * * 3826 * * 14 0 * * * * * * 2421 0 0 L 15 * * * * 608 * * * * 2917 * * * * * * * 2614 * 4370 15 0 * * * * * * 2421 0 0 D 16 * * 0 * * * * * * * * * * * * * * * * * 16 0 * * * * * * 2421 0 0 P 17 * * * * 3226 * * * * * * * 278 * * * * * * 3871 17 0 * * * * * * 2421 0 0 R 18 * * * * * * * * * * 3915 * * * 99 * * * * * 18 0 * * * * * * 2421 0 0 R 19 * * * * * * * * 4122 * 2440 * * * 513 4117 * * * * 19 0 * * * * * * 2421 0 0 V 20 1993 * * * * * * 2529 * * * * * * * * 1391 2363 * * 20 0 * * * * * * 2421 0 0 L 21 3226 * * * 4524 * * * * 484 3915 * * * * * * 3871 * * 21 0 * * * * * * 2421 0 0 T 22 * * * * * * * 1984 * * * * * * * * 3965 549 * * 22 0 * * * * * * 2421 0 0 A 23 821 * * * * 2104 * * * 2797 * * * * * * * 4122 * * 23 0 * * * * * * 2421 0 0 L 24 3871 * * * 3226 * * 4370 * 1198 * 4434 * 2581 * * 3826 4147 * * 24 0 * * * * * * 2421 0 0 F 25 2055 * * * 1607 2488 2513 * * * * * * * * 4682 4698 * * * 25 0 * * * * * * 2421 0 0 V 26 1933 * * * * * * 2160 * * * * * * * 4370 3459 1414 * * 26 0 * * * * * * 2421 0 0 Y 27 * * * * 417 3871 * * * * * * * * * * * * 3072 3965 27 0 * * * * * * 2421 0 0 L 28 * * * * 3226 * * * * 278 3871 * * * * * * * * * 28 0 * * * * * * 2421 0 0 T 29 2161 * * * 1116 * * 3826 * 3915 * * * * * * 3053 4117 * * 29 0 * * * * * * 2421 0 0 V 30 2891 * * * * 3274 * 3332 * 2734 * * * * * 4698 4434 1226 * * 30 0 * * * * * * 2421 0 0 I 31 * * * * * * * 2050 * 399 * * * * * * * * * * 31 0 * * * * * * 2421 0 0 A 32 84 * * * * 4147 * * * * * * * * * * * * * * 32 0 * * * * * * 2421 0 0 L 33 * * * * 3226 * * 3585 * 727 * * * * * * * 2281 * * 33 0 * * * * * * 2421 0 0 L 34 2614 * * * 3692 * * 3718 * 1211 3309 * * * * * 3826 3647 * * 34 0 * * * * * * 2421 0 0 I 35 * * * * * * * 163 * * * * * * * * * 3226 * * 35 0 * * * * * * 2421 0 0 H 36 * * * * * * 0 * * * * * * * * * * * * * 36 0 * * * * * * 2421 0 0 F 37 * * * * 670 * * * * 2581 4147 * * * * * * 3826 * 3692 37 0 * * * * * * 2421 0 0 G 38 3226 * * * * 3965 * 810 * 4117 2799 * * * * * * 4122 * * 38 0 * * * * * * 2421 0 0 L 39 4682 2603 * * * * * * * 328 * * * * * * * * * * 39 0 * * * * * * 2421 0 0 L 40 * * * * * * * 3226 * 282 3826 * * * * * * * * * 40 0 * * * * * * 2421 0 0 S 41 * * * * * 3012 * * * * * * * * 3692 458 3826 * * * 41 0 * * * * * * 2421 0 0 T 42 * * * * * * 4117 * * * * * * * * 2440 400 * * * 42 0 * * * * * * 2421 0 0 D 43 3284 * 1737 1815 * * * * * * * 3354 3049 * * 4754 4122 * * * 43 0 * * * * * * 2421 0 0 R 44 * * * 2902 * * * * 2796 * * * * * 712 3161 * * * * 44 0 * * * * * * 2421 0 0 L 45 * * * * 494 * * * * 3965 * * * * * * * * * 2146 45 0 * * * * * * 2421 0 0 N 46 * * 3692 * * * * * * * * 116 * * * * * * * * 46 0 * * * * * * 2421 0 0 W 47 * * * * * * * * * * * * * * * * * * 0 * 47 39 * 5225 * * * * 2421 0 0 W 48 * * * * 4050 * * 4341 * 360 4570 * * * * * * * 3860 * 48 0 * * * * * 0 2425 0 1000 E 49 * * 2477 521 * * * * * 3619 * * * 4570 * * * * * * 49 122 * 3624 * * * 0 2425 0 1000 F 50 * * * * 3312 423 * 3595 * * * * * 3823 * * * * * * 50 0 * * * * 1030 970 2387 0 1242 Q 51 1379 * * * * * * * 4030 * 4451 * 1910 2618 * 3652 * * * * 51 0 * * * * 0 * 2377 0 1000 R 52 2843 * 2597 * * * * * 3531 * * 4295 1607 4581 2412 * * * * * 52 0 * * * * * * 2399 0 0 G 53 1301 * * * * 2314 * * 3531 * * 4457 * * * 3966 3301 * * 3386 53 0 * * * * * * 2399 0 0 L 54 757 * * * * * * * 4165 2553 * 4368 * * * * * 2901 * * 54 0 * * * * * * 2351 0 0 P 55 * * * * * * * * 2005 * * * 413 * * * * * * * 55 0 * * * * * * 1999 0 0 K 56 840 * * * * * * * 2586 * * * * * * * 3516 2415 * * 56 0 * * * * * * 1885 0 0 A 57 0 * * * * * * * * * * * * * * * * * * * 57 0 * * * * * * 1862 0 0 A 58 1907 * * * * * * * * * * * * * * 2110 995 * * * 58 0 * * 0 * * * 1816 0 0 //