HHsearch 1.5 NAME c6dlnB_ FAM FILE c6dlnB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6dlnB_.a3m DATE Sat Aug 11 08:36:35 2018 LENG 39 match states, 39 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4917 1.8588 SEQ >ss_dssp CCHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHTC >sa_dssp EEDEEDEEDCDDDEEEEEDEDDDEEDDEECEEEEDEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 901455299999999999999999999999999999739 >Consensus xWxslWxWFdiskWlwyikIxixivxglIglRivxxvxs >c6dlnB_ KWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLS >UniRef50_P17281(656-694:854) Transmembrane protein gp41 n=673 Tax=Primate lentivirus group RepID=ENV_SIVCZ E=1e-10 s/c=1.74 id=68% cov=103% QWASLWNWFDITKWLWYIKIFLMAVGGIIGLRIIMTVFS >UniRef50_Q6VG43(688-725:897) Env protein n=92 Tax=Primate lentivirus group RepID=Q6VG43_SIVCZ E=2e-06 s/c=1.41 id=59% cov=100% EWDSLWEWFDISKWLWYIKIFCMVVAGLVLFRLVMFVL- >UniRef50_Q8AIH5(666-704:871) Transmembrane protein gp41 n=57 Tax=Primate lentivirus group RepID=ENV_SIVTN E=3e-09 s/c=1.61 id=62% cov=103% KWSSLWDWFDITQWLWYIKIAIIIVAGLVGLRILMFIVN >UniRef50_Q77377(665-703:863) Transmembrane protein gp41 n=1156 Tax=Primate lentivirus group RepID=ENV_HV1AN E=2e-08 s/c=1.55 id=60% cov=103% EWASIWNWLDITKWLWYIKIAIIIVGALVGVRVIMIVLN >UniRef50_Q699W2(667-705:870) Env protein n=5 Tax=Primate lentivirus group RepID=Q699W2_SIVCZ E=2e-07 s/c=1.46 id=41% cov=100% -WDSLWNWFDLSRWFWWIRLVVYIIAALILLRIAMFGVN >UniRef50_Q699U6(662-697:840) Env protein n=3 Tax=Primate lentivirus group RepID=Q699U6_SIVCZ E=3e-06 s/c=1.47 id=32% cov=95% EWDSLWSWFDLSKWFQYLKIGFFAIAAIVILRVLSF--- >UniRef50_Q1XE72(688-726:890) Env protein n=10 Tax=Primate lentivirus group RepID=Q1XE72_SIVCZ E=5e-07 s/c=1.43 id=36% cov=100% -WDSLWSWFNLSAWFRWLRIAVIVVASLILLRIVMYIIN >UniRef50_P27977(693-730:877) Transmembrane protein gp41 n=1300 Tax=Primate lentivirus group RepID=ENV_SIVVG E=0.0002 s/c=1.23 id=36% cov=100% -WSDFWSWFDFSKWLNILKIGFLDVLGIIGLRLLYTVYS >UniRef50_Q9YP75(86-123:278) Envelope glycoprotein (Fragment) n=1 Tax=Simian immunodeficiency virus RepID=Q9YP75_SIVCZ E=3e-06 s/c=1.39 id=31% cov=100% -WSDFWSWFDLSKWFGWLKIAVMVIAGIIVARVLFVVIS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 1335 * * * * 1034 * * * * 3119 * * * * * * 1 0 * * * * * * 1753 0 0 W 2 * * * * * * * * * * * * * * * * * * 0 * 2 0 * * * * * * 2271 0 0 A 3 1747 * 1862 * * * * * 4873 * * 4686 * * * 1696 4462 * * * 3 0 * * * * * * 2271 0 0 S 4 * * 2072 * * 3643 * * * * * 3035 * * * 836 * * * * 4 0 * * * * * * 2271 0 0 L 5 * * * * 2072 * * 4060 * 510 * * * * * * * * * * 5 0 * * * * * * 2271 0 0 W 6 * * * * * * * * * * * * * * * * * * 0 * 6 0 * * * * * * 2271 0 0 N 7 * * 3670 4334 * * * * * * * 1174 * * * 1343 4850 * * * 7 0 * * * * * * 2271 0 0 W 8 * * * * * * * * * * * * * * * * * * 0 * 8 0 * * * * * * 2271 0 0 F 9 * * * * 89 * * * * 4060 * * * * * * * * * * 9 0 * * * * * * 2271 0 0 N 10 * * 337 * * * * * * * * 3008 * * * 4686 4462 * * * 10 0 * * * * * * 2271 0 0 I 11 * * * * 3553 * * 898 * 1403 * * * * * * * * * * 11 0 * * * * * * 2271 0 0 T 12 * * * * * * * * * * * * * * * 710 1363 * * * 12 0 * * * * * * 2271 0 0 N 13 3998 * * * * * * * 890 * * 2507 * 3819 3055 5023 * * * * 13 0 * * * * * * 2271 0 0 W 14 * * * * * * * * * * * * * * * * * * 0 * 14 0 * * * * * * 2271 0 0 L 15 * * * * 1403 * * * * 685 * * * * * * * * * * 15 0 * * * * * * 2271 0 0 W 16 * * * * * 2712 * * * * * 3553 * 4067 3998 * * * 644 * 16 0 * * * * * * 2271 0 0 Y 17 * * * * * * * 3553 * * * * * * * * * * 1651 746 17 0 * * * * * * 2271 0 0 I 18 * * * * * * * 644 * 1711 4194 * * * * * * * * * 18 0 * * * * * * 2271 0 0 K 19 * * * * * * * * 342 * * * * * 2244 * * * * * 19 0 * * * * * * 2271 0 0 L 20 * * * * * * * 212 * 2873 * * * * * * * * * * 20 0 * * * * * * 2271 0 0 F 21 1657 * * * 1361 2393 * * * * * * * * * * * 3276 * * 21 0 * * * * * * 2271 0 0 I 22 * 4334 * * 2393 * * 983 * 4803 * * * * * * * 2196 * * 22 0 * * * * * * 2271 0 0 M 23 * * * * 4067 * * 2166 * 2936 1048 * * * * * * * * 3276 23 0 * * * * * * 2271 0 0 I 24 3389 * 3553 * * * * 1037 * * * * * * * * * 1591 * * 24 0 * * * * * * 2271 0 0 V 25 * * * * * * * 1516 * * * * * * * * * 620 * * 25 0 * * * * * * 2271 0 0 G 26 1102 * * * * 1162 * * * 3522 * * * * * * * * * * 26 0 * * * * * * 2324 0 0 G 27 1977 * * * * 549 * * * * * * * * * 3997 * * * * 27 0 * * * * * * 2324 0 0 L 28 * * * * * * * 1400 * 687 * * * * * * * * * * 28 0 * * * * * * 2324 0 0 V 29 * * * * * * * 580 * * * * * * * * * 1596 * * 29 0 * * * * * * 2329 0 0 G 30 * * * * * 714 * 2612 * 2522 * * * * * * * 4246 * * 30 0 * * * * * * 2329 0 0 L 31 3203 * * * 4326 * * 4697 * 429 * * * * * * * 4058 * * 31 0 * * * * * * 2329 0 0 R 32 * * * * * * * * * * * * * * 0 * * * * * 32 0 * * * * * * 2329 0 0 I 33 * * * * * * * 613 * 2863 * * * * * * * 2261 * * 33 0 * * * * * * 2329 0 0 V 34 4033 * * * * * * 1913 * 1856 * * * * * * * 1332 * * 34 0 * * * * * * 2329 0 0 F 35 * * * * 1492 * * * * 4560 1318 * * * * 4123 * 4161 * 3513 35 0 * * * * * * 2329 0 0 A 36 2394 * * * 1687 * * 2784 * * * * * * * * 2354 3394 * 3985 36 0 * * * * * * 2329 0 0 V 37 * * * * * 3958 * 1937 * 3610 * * * * * * * 755 * * 37 0 * * * * * * 2296 0 0 L 38 * * * * 4419 * * 2115 * 1254 * * * * * * * 2260 * 3405 38 0 * * * * * * 2296 0 0 S 39 * * * * * * * * * * * 1353 * * * 717 * * * * 39 0 * * 0 * * * 2247 0 0 //