HHsearch 1.5 NAME c6dkuA_ FAM FILE c6dkuA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6dkuA_.a3m DATE Sat Jul 21 08:23:47 2018 LENG 125 match states, 125 columns in multiple alignment FILT 3 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.9 EVD 0.4069 -0.1908 SEQ >ss_dssp CCCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSHHHHTCBCCEEECSSGGGSCGGGGGGCEECC SSCCBTTTTEEEEEEETTEEEEEEC >sa_dssp EEECDDEDACECACEDBEEEEDBCCBAACAAADCCEEDEBADDABDBADEBCEEEDDBDDAADBABDEBDDADEBDBBECECEDDEDADEEBCECBDECD EDEBCACDCBABBBCBEEDCCAADD >ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCC CCCCCCCCCEEEEEECCCCCCCCCC >ss_conf 9877799999999864378985699999999996401350589999999996247663302134444406760788854785041008757764310489 8812137535999986756202349 >Consensus xxxlxxxxxxxilxxhLpGxxTaFHxLvqvixkixxdSxxlxxxxdxFxxxLxeGxsaqaAlixitxrxxxFxxxxpPvixvxsxxxiPRaxqksLRxVP pxPktidrGWVcvyxxxxGtlgLKI >c6dkuA_ RLPLDPTEFVRVLTGYLTGPRTAFHELVSAIAMVSRDSHDLQVAMDHFNRELMDGFSAHAAIISITQRCEYFRNCEAPTTQVTSKSQIPRAYHRRLRDVP EGPKTLGRGWVYIYLTPEGSLGLKI >UniRef50_Q6V1Q9(226-340:340) Polymerase cofactor VP35 n=11 Tax=Ebola-like viruses RepID=VP35_EBOZ5 E=1e-15 s/c=0.73 id=38% cov=92% ----------NIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQITKRVPIFQDAAPPVIHIRSRGDIPRACQKSLRPVP PSPK-IDRGWVCVFQLQDGkTLGLKI >UniRef50_P35259(208-329:329) Polymerase cofactor VP35 n=75 Tax=Lake Victoria marburgvirus RepID=VP35_MABVM E=1e-42 s/c=1.43 id=29% cov=98% ---LSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPSQKSLRAVP PNP-TIDKGWVCVYSSEQGeTRALKI # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1000 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 1000 0 0 L 4 * * * * * * * * * 0 * * * * * * * * * * 4 0 * * * * * * 1630 0 0 D 5 * * 988 * * * * * * * * * * * * 1012 * * * * 5 0 * * * * * * 1630 0 0 P 6 1012 * * * * * * * * * * * 988 * * * * * * * 6 0 * * * * * * 1630 0 0 T 7 * * * * * * * * 1012 * * * * * * * 988 * * * 7 0 * * * * * * 1630 0 0 E 8 * * 1012 988 * * * * * * * * * * * * * * * * 8 0 * * * * * * 1630 0 0 F 9 * * * * 988 * * * * 1012 * * * * * * * * * * 9 0 * * * * * * 1630 0 0 V 10 1012 * * * * * * * * * * * * * * * * 988 * * 10 0 * * * * * * 1630 0 0 R 11 * * * * * * * * * 1572 * 1669 * * 1518 * * * * * 11 0 * * * * * * 1923 0 0 V 12 * * * * * * * 1669 * 1572 * * * * * * * 1518 * * 12 0 * * * * * * 1923 0 0 L 13 * * * * * * * * * 545 1669 * * * * * * * * * 13 0 * * * * * * 1923 0 0 T 14 * * * * 1572 * * * * * * * * * * * 1518 * * 1669 14 0 * * * * * * 1923 0 0 G 15 * * 1669 * * 1518 * * * * * * * * * * 1572 * * * 15 0 * * * * * * 1923 0 0 Y 16 * * * * * * 620 * * * * * * * * * * * * 1518 16 0 * * * * * * 1923 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 1923 0 0 T 18 * * * * * * * * * * * * 620 * * * 1518 * * * 18 0 * * * * * * 1923 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 1923 0 0 P 20 * * * * 1669 * * * * * * 1572 1518 * * * * * * * 20 0 * * * * * * 1923 0 0 R 21 * * * * * 1669 * * * * * 1572 * * 1518 * * * * * 21 0 * * * * * * 1923 0 0 T 22 * * * * * * * * * * * * * * * * 0 * * * 22 0 * * * * * * 1923 0 0 A 23 591 * * * * * * * * * * * 1572 * * * * * * * 23 0 * * * * * * 1923 0 0 F 24 * * * * 0 * * * * * * * * * * * * * * * 24 0 * * * * * * 1923 0 0 H 25 * * * * * * 0 * * * * * * * * * * * * * 25 0 * * * * * * 1923 0 0 E 26 * * * 1518 * * * 1572 * * * * * 1669 * * * * * * 26 0 * * * * * * 1923 0 0 L 27 * * * * * * * * * 0 * * * * * * * * * * 27 0 * * * * * * 1923 0 0 V 28 1572 * * * * * * * * * * * * * * * * 591 * * 28 0 * * * * * * 1923 0 0 S 29 * * * * * * * * * * * * * 620 * 1518 * * * * 29 0 * * * * * * 1923 0 0 A 30 1518 * * * * * * * * * * * * * * * * 620 * * 30 0 * * * * * * 1923 0 0 I 31 * * * * * * * 591 * 1572 * * * * * * * * * * 31 0 * * * * * * 1923 0 0 A 32 1518 1669 * * * * * * * * * * * * * 1572 * * * * 32 0 * * * * * * 1923 0 0 M 33 * * * * * * * * 620 * 1518 * * * * * * * * * 33 0 * * * * * * 1923 0 0 V 34 * * * * * * * 1572 * 1669 * * * * * * * 1518 * * 34 0 * * * * * * 1923 0 0 S 35 1572 * * * * 1669 * * * * * * * * * 1518 * * * * 35 0 * * * * * * 1923 0 0 R 36 * * * * * * * * 1669 * * * * * 1518 * * * * 1572 36 0 * * * * * * 1923 0 0 D 37 * * 591 * * * * * 1572 * * * * * * * * * * * 37 0 * * * * * * 1923 0 0 S 38 * * * * * * * * * * * * * * * 0 * * * * 38 0 * * * * * * 1923 0 0 H 39 * * * * * 1572 1518 * * * * 1669 * * * * * * * * 39 0 * * * * * * 1923 0 0 D 40 * * 1518 * * * * * 1572 * * * * * * 1669 * * * * 40 0 * * * * * * 1923 0 0 L 41 * * * * * * * * * 591 * * * * * 1572 * * * * 41 0 * * * * * * 1923 0 0 Q 42 * * 1669 * * 1572 * * * * * * * 1518 * * * * * * 42 0 * * * * * * 1923 0 0 V 43 1572 * * * * * * 1669 * * * * * * * * * 1518 * * 43 0 * * * * * * 1923 0 0 A 44 1518 * * * 1572 * * 1669 * * * * * * * * * * * * 44 0 * * * * * * 1923 0 0 M 45 * * * * * * 1669 * * 1572 1518 * * * * * * * * * 45 0 * * * * * * 1923 0 0 D 46 1669 * 545 * * * * * * * * * * * * * * * * * 46 0 * * * * * * 1923 0 0 H 47 1572 * * 1669 * * 1518 * * * * * * * * * * * * * 47 0 * * * * * * 1923 0 0 F 48 * * * * 0 * * * * * * * * * * * * * * * 48 0 * * * * * * 1923 0 0 N 49 * * * * * * 1572 * * * * 1518 * 1669 * * * * * * 49 0 * * * * * * 1923 0 0 R 50 1669 * * * * * * * * * * * * 1572 1518 * * * * * 50 0 * * * * * * 1923 0 0 E 51 * * * 1518 * * * 1572 * * * * * * * 1669 * * * * 51 0 * * * * * * 1923 0 0 L 52 * * * * * * * * * 0 * * * * * * * * * * 52 0 * * * * * * 1923 0 0 M 53 1669 * * * * * * * * * 1518 * * * * 1572 * * * * 53 0 * * * * * * 1923 0 0 D 54 * * 1518 620 * * * * * * * * * * * * * * * * 54 0 * * * * * * 1923 0 0 G 55 * * * * * 0 * * * * * * * * * * * * * * 55 0 * * * * * * 1923 0 0 F 56 * * 1669 1572 1518 * * * * * * * * * * * * * * * 56 0 * * * * * * 1923 0 0 S 57 * * * * * * * * * * * 1572 * * * 591 * * * * 57 0 * * * * * * 1923 0 0 A 58 545 * * * * * * * * * * * 1669 * * * * * * * 58 0 * * * * * * 1923 0 0 H 59 * * * * * * 1518 * * * * * * 620 * * * * * * 59 0 * * * * * * 1923 0 0 A 60 545 1669 * * * * * * * * * * * * * * * * * * 60 0 * * * * * * 1923 0 0 A 61 0 * * * * * * * * * * * * * * * * * * * 61 0 * * * * * * 1923 0 0 I 62 * * * * * * * 1518 * 620 * * * * * * * * * * 62 0 * * * * * * 1923 0 0 I 63 * * * * * * * 591 * * * * * * * * 1572 * * * 63 0 * * * * * * 1923 0 0 S 64 * * * * * * * * * * * * * 1669 1572 1518 * * * * 64 0 * * * * * * 1923 0 0 I 65 * * * * * * * 591 * 1572 * * * * * * * * * * 65 0 * * * * * * 1923 0 0 T 66 * * * * * * * * * * * * * * * 1572 591 * * * 66 0 * * * * * * 1923 0 0 Q 67 * * * * * * * * 1669 * * * * 1518 1572 * * * * * 67 0 * * * * * * 1923 0 0 R 68 * * * * * * * * * * * * * * 591 * 1572 * * * 68 0 * * * * * * 1923 0 0 C 69 * 1518 * * 1572 * * * * * * * * * * * * 1669 * * 69 0 * * * * * * 1923 0 0 E 70 * * 1572 1518 * * * * * * * * 1669 * * * * * * * 70 0 * * * * * * 1923 0 0 Y 71 1572 * * * * * * 1669 * * * * * * * * * * * 1518 71 0 * * * * * * 1923 0 0 F 72 * * * * 0 * * * * * * * * * * * * * * * 72 0 * * * * * * 1923 0 0 R 73 * * * * * * * * * 1572 * * * 1669 1518 * * * * * 73 0 * * * * * * 1923 0 0 N 74 * * 1669 * * 1572 * * * * * 1518 * * * * * * * * 74 0 * * * * * * 1923 0 0 C 75 1669 1518 * * * * * * * * * * * * * * * 1572 * * 75 0 * * * * * * 1923 0 0 E 76 1669 * * 1518 * * * * * * * * * * * * * 1572 * * 76 0 * * * * * * 1923 0 0 A 77 1518 * * * * * * * * * * * 620 * * * * * * * 77 0 * * * * * * 1923 0 0 P 78 * * * * * * * * * * * * 0 * * * * * * * 78 0 * * * * * * 1923 0 0 T 79 * * * * * * * * * * * * * * * * 1518 620 * * 79 0 * * * * * * 1923 0 0 T 80 * * * * * * * 620 * * * * * * * * 1518 * * * 80 0 * * * * * * 1923 0 0 Q 81 * * * * * * 1669 * * * * * * 1518 1572 * * * * * 81 0 * * * * * * 1923 0 0 V 82 * * * * * * * 1669 * * * * * * * * * 545 * * 82 0 * * * * * * 1923 0 0 T 83 * * * * * * * * 1572 * * * * * 1669 * 1518 * * * 83 0 * * * * * * 1923 0 0 S 84 * * * * * * * * * * * 1572 * * * 591 * * * * 84 0 * * * * * * 1923 0 0 K 85 * * * * 1572 * * * 1518 * * * * * 1669 * * * * * 85 0 * * * * * * 1923 0 0 S 86 * * * * * 1669 * * * * * * * 1572 * 1518 * * * * 86 0 * * * * * * 1923 0 0 Q 87 * * 1669 * * * * * * * * * * 1518 * * 1572 * * * 87 0 * * * * * * 1923 0 0 I 88 * * * * * * * 591 * * * * * * * * * 1572 * * 88 0 * * * * * * 1923 0 0 P 89 * * * * * * * * * * * * 0 * * * * * * * 89 0 * * * * * * 1923 0 0 R 90 * * * * * * * * * * * * * * 0 * * * * * 90 0 * * * * * * 1923 0 0 A 91 591 * * * * * * * * * * * 1572 * * * * * * * 91 0 * * * * * * 1923 0 0 Y 92 * 1669 * * * * * * * * * * * * * 1572 * * * 1518 92 0 * * * * * * 1923 0 0 H 93 * * * * * * 1518 * * * * * * 620 * * * * * * 93 0 * * * * * * 1923 0 0 R 94 * * * * * * * * 620 * * * * * 1518 * * * * * 94 0 * * * * * * 1923 0 0 R 95 * * * * * * * * * * * * * * 1518 620 * * * * 95 0 * * * * * * 1923 0 0 L 96 * * * * * * * * * 0 * * * * * * * * * * 96 0 * * * * * * 1923 0 0 R 97 * * * * * * * * * * * * * * 0 * * * * * 97 0 * * * * * * 1923 0 0 D 98 1572 * 1518 * * * * * * * * * 1669 * * * * * * * 98 0 * * * * * * 1923 0 0 V 99 * * * * * * * * * * * * * * * * * 0 * * 99 0 * * * * * * 1923 0 0 P 100 * * * * * * * * * * * * 0 * * * * * * * 100 0 * * * * * * 1923 0 0 E 101 * * * 1518 * * * * * * * * 620 * * * * * * * 101 0 * * * * * * 1923 0 0 G 102 * * * * * 1518 * * * * * 1572 * * * 1669 * * * * 102 0 * * * * * * 1923 0 0 P 103 * * * * * * * * * * * * 0 * * * * * * * 103 591 * 1572 * * * * 1923 0 0 K 104 * * * * * * * * 0 * * * * * * * * * * * 104 988 * 1013 * * 0 * 1525 0 1000 T 105 * * * * * * * * * * * * * * * * 0 * * * 105 0 * * * * 0 * 1630 0 1000 L 106 * * * * * * * 620 * 1518 * * * * * * * * * * 106 0 * * * * * * 1923 0 0 G 107 * * 620 * * 1518 * * * * * * * * * * * * * * 107 0 * * * * * * 1923 0 0 R 108 * * * * * * * * 1572 * * * * * 591 * * * * * 108 0 * * * * * * 1923 0 0 G 109 * * * * * 0 * * * * * * * * * * * * * * 109 0 * * * * * * 1923 0 0 W 110 * * * * * * * * * * * * * * * * * * 0 * 110 0 * * * * * * 1923 0 0 V 111 * * * * * * * * * * * * * * * * * 0 * * 111 0 * * * * * * 1923 0 0 Y 112 * 620 * * * * * * * * * * * * * * * * * 1518 112 0 * * * * * * 1923 0 0 I 113 * * * * * * * 1518 * * * * * * * * * 620 * * 113 0 * * * * * * 1923 0 0 Y 114 * * * * 1669 * * * * * * * * * * * * * * 545 114 0 * * * * * * 1923 0 0 L 115 * * * * * * * * * 1518 * * * 1669 * 1572 * * * * 115 0 * * * * * * 1923 0 0 T 116 * * * * * * * * * 1669 * * * * * 1572 1518 * * * 116 0 * * * * * * 1923 0 0 P 117 * * * 1572 * * * * * * * * 1518 1669 * * * * * * 117 0 * * * * * * 1923 0 0 E 118 * * 1669 1518 * * * * * * * * * 1572 * * * * * * 118 0 * * * * * * 1923 0 0 G 119 * * * * * 0 * * * * * * * * * * * * * * 119 1518 620 * 0 * * * 1923 1488 0 S 120 * * * * * * * * * * * * * * * 1518 620 * * * 120 0 * * * * * * 1923 0 0 L 121 * * * * * * * * * 591 * * * * 1572 * * * * * 121 0 * * * * * * 1923 0 0 G 122 1572 * * * * 591 * * * * * * * * * * * * * * 122 0 * * * * * * 1923 0 0 L 123 * * * * * * * * * 0 * * * * * * * * * * 123 0 * * * * * * 1923 0 0 K 124 * * * * * * * * 0 * * * * * * * * * * * 124 0 * * * * * * 1923 0 0 I 125 * * * * * * * 0 * * * * * * * * * * * * 125 0 * * 0 * * * 1923 0 0 //