HHsearch 1.5 NAME c6db1A_ FAM FILE c6db1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6db1A_.a3m DATE Sat May 19 08:39:01 2018 LENG 137 match states, 137 columns in multiple alignment FILT 8 out of 12 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4056 -1.2992 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCTT THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC >sa_dssp EEEECADDADDBBEDACDBBEDADDCADEBBEDDEEEDECECDCADDABDDADDCADDADECCDDDADEEBBECABDCACCAADEAACCBBECBDECDEE CBCDCCEEDADDCCEDBDDABEDADECACBDCEEEDE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH HHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHCCCCC >ss_conf 9468886413465405699999999999876554138816689999878998998998541254788878999999999999999866799997418926 8999999733389999986999844441320102469 >Consensus xxxxxxxxnxxiinxGxdqyxRxVtxmxRAxxxxxxxdtxxxxxaqxaLdxxkxxLxxFkaxsHxxixpxxvxxVxxsWxnLixxaixPMlxaAxagxxd xyxxxxxdvypxLxxaFxxxixrYxxxxxxxxxxxxx >c6db1A_ DIDRHLVRQXTVLSQGNDQYFRFVTRLSRAXDVKIGGGTPDFAPARQSLENXRQKLEEXKALSPGPXNPDISREVLSNWQALLEKGVVPQXQLAQQGSLT AWSEHASTVTPALSRAFGASAERFSHEAGAXLDNTRV >UniRef50_C6DD51(58-172:559) Methyl-accepting chemotaxis sensory transducer n=6 Tax=Enterobacteriaceae RepID=C6DD51_PECCP E=3e-36 s/c=1.32 id=29% cov=81% ---------------GADQYFRAVTRMERTMDY-LQRNEPENAKqtldmAQIALKNTKDSLEKFQTAEHVGVEPATVDAVSKTWSTLIATAIDPMNAALQ RNDYEGFRQIFRSVYPSISLAFGEDIKRYSD----------- >UniRef50_D2C1Q1(43-170:542) Methyl-accepting chemotaxis sensory transducer n=1 Tax=Dickeya dadantii Ech586 RepID=D2C1Q1_DICD5 E=7e-13 s/c=0.59 id=20% cov=86% -------KNYTILANGREAFTQSIALLNRSTLFQQRGDTAQAqallQKVQSNLDTTRSLLSTFRAASQDGIDPTLAGKITDSWENAISQALIPMLNASQA GHFDEYQHDYLDVYPALALAFGNNVAQY------------- >UniRef50_C6C8C7(55-172:229) Putative uncharacterized protein n=1 Tax=Dickeya dadantii Ech703 RepID=C6C8C7_DICDC E=5e-05 s/c=0.42 id=27% cov=82% ------------IDKGHYQISRTVKHIMAAV-VHLQRGEREYAvpnviQAAKALQDSRMALQAFQRDSHSDAVRDHVSEVGLAWQQLLDKGLEPMLQTAH AGLPETTTQHYQYHFTPLRQRFEHTLSRY------------- >UniRef50_C6CPV8(48-177:564) Methyl-accepting chemotaxis sensory transducer n=36 Tax=Enterobacteriaceae RepID=C6CPV8_DICZE E=1e-33 s/c=1.10 id=31% cov=93% -----LVNNMNLVNTGNDQYFRMVTRLARAIDYRQSGDNQKADEQQKssqaALDLLKSNLEAFKKIDHVGMSPELVEAVTRDWSNLITQGVEPMFQRAVD KKFDEYDKYAKDVVPVFSRQFNVSFTNF-NKAGSTM----- >UniRef50_C6CKD5(50-170:539) Methyl-accepting chemotaxis sensory transducer n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKD5_DICZE E=3e-31 s/c=1.12 id=19% cov=86% -------KNYTILSNGREAFTQSIALINRSALFQQRGDTAQAqallQRVQGNLDSTRTLLATFRASSHDGINATLAGQIADSWDNAIVQALIPMLNASRA GRFDEYQHYYLDVYPALAQAFGNHVAQY------------- >UniRef50_C4T2H1(50-173:551) Methyl-accepting chemotaxis protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T2H1_YERIN E=4e-29 s/c=1.03 id=18% cov=88% -------QNGDIINGANAQYYRAITAMERAMGGLGKNDTGVFDLEMKAtlaeLDSLKNGLSQFKAIDHGNLDSATIDAIYNSSFNLYNSAVLPMFESAKA KNTNGFETIKADKYLPLRRDFSAAIDKYNAK---------- >UniRef50_C6CI39(51-169:556) Methyl-accepting chemotaxis sensory transducer n=2 Tax=Dickeya RepID=C6CI39_DICZE E=3e-26 s/c=1.00 id=14% cov=86% --------NGDIINGASDRYYKVKLTMDEALAAEdnSSRERALLNEAAGDVEFLKGGLAQFKVTDHANISTKSIDDIYNSSYQLFSEAIVPMLDAARQNN HDAYAKLMSEKYNPLRVKFTTAINEYN------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 0 * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 R 4 * * * * * * * * * * * * * * 0 * * * * * 4 0 * * * * * * 1000 0 0 H 5 * * * * * * 0 * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 L 6 * * * * * * * * * 0 * * * * * * * * * * 6 0 * * * * * * 1538 0 0 V 7 * * * * * * * * * * * * * * * * * 0 * * 7 0 * * * * * * 1538 0 0 R 8 * * * * * * * * 1602 * * 2245 * 2063 2183 * * * * * 8 0 * * * * * * 2623 0 0 Q 9 * * * * * * * * * * * 289 * 2462 * * * * * * 9 0 * * * * * * 2953 0 0 X 10 * * * * * 1174 * * * * 2140 * * * * * * * * 1600 10 0 * * * * * * 2621 0 0 T 11 * * 1436 * * * * * * * * 2512 * * * * 1136 * * * 11 0 * * * * * * 2953 0 0 V 12 * * * * * * * 637 * 2512 * * * * * * * 2462 * * 12 0 * * * * * * 2953 0 0 L 13 * * * * * * * 1043 * 1423 * * * * * * * 2818 * * 13 0 * * * * * * 3379 0 0 S 14 3093 * 2552 * * * * * * * * 1131 * * * 1967 * * * * 14 0 * * * * * * 3379 0 0 Q 15 * * * * * 1668 * * 2552 * * 2113 * 2817 * * 2818 * * * 15 0 * * * * * * 3379 0 0 G 16 1841 * * * * 472 * * * * * * * * * * * * * * 16 0 * * * * * * 3564 0 0 N 17 2972 * * * * * 2767 * * * * 1426 * * 2296 2738 * * * * 17 0 * * * * * * 3564 0 0 D 18 2951 * 943 2296 * * * * * * * * * * * * * * * 2767 18 0 * * * * * * 3564 0 0 Q 19 2296 * * * * * * * * * * * * 629 2738 * * * * * 19 0 * * * * * * 3564 0 0 Y 20 * * * * 2296 * * 2767 * * * * * * * * * * * 623 20 0 * * * * * * 3564 0 0 F 21 * * * * 1433 * * * * * * * * * * 2767 2296 * * 1841 21 0 * * * * * * 3564 0 0 R 22 * * * * * * * * 2738 * * * * 2296 629 * * * * * 22 0 * * * * * * 3564 0 0 F 23 1961 * * * 3012 * * * * * 3073 * * * * 2296 2767 2738 * * 23 0 * * * * * * 3564 0 0 V 24 * * * * * * * 1587 2738 * * * * * * * * 951 * * 24 0 * * * * * * 3564 0 0 T 25 2296 * * * * * * * 2767 2738 * * * * * * 1001 * * * 25 0 * * * * * * 3564 0 0 R 26 2951 * * * * * 2767 * * 2296 * * * * 1433 * 2738 * * * 26 0 * * * * * * 3564 0 0 L 27 * * * * * * * 2006 * 1538 1298 * * * * * * * * * 27 0 * * * * * * 3564 0 0 S 28 3073 * 2738 1961 * * * * * * 2767 2296 * * * 3012 * * * * 28 0 * * * * * * 3564 0 0 R 29 2767 * * 2738 * * * * * * * * * * 508 * * * * * 29 0 * * * * * * 3564 0 0 A 30 580 * * * * * * * * * * * * * * 2296 2972 * * * 30 0 * * * * * * 3564 0 0 X 31 3130 * * * * * * 2826 * 2584 1780 * * * * * 3127 2536 * * 31 273 * 2536 * * * * 3368 0 0 D 32 2532 * 1173 * * 2757 * * * 2084 * * * * * * * * * * 32 0 * * * * 0 * 3226 0 1000 V 33 2738 * * * 2296 2951 * * * * * * * * * * * 1884 * 2021 33 197 * 2972 * * * * 3564 0 0 K 34 * * * 2592 * * 2552 * 2817 2748 * * * 2113 2818 * * * * * 34 262 2592 * 1000 1000 0 * 3379 1000 1000 I 35 * * * * * 2951 * 3012 * 1866 * * * 1633 * 2738 * * * * 35 0 * * * * * * 3564 0 0 G 36 * * * * * 3012 * * 2951 * * * * 1866 2296 1896 * * * * 36 0 * * * * * * 3564 0 0 G 37 * * * * * 1164 * * * * * 2951 * * 1237 * * * * * 37 0 * * * * * * 3564 0 0 G 38 * * 1146 2738 * 1884 * * * * * 2972 * * * * * * * * 38 0 * * * * * * 3564 0 0 T 39 * * * 1866 * * * * * * * 3073 * * 2738 * 1130 * * * 39 0 * * * * * * 3564 0 0 P 40 1500 * * * * 2951 * * * * * * 1992 3073 2767 * * * * * 40 0 * * * * * * 3564 0 0 D 41 * * 3012 1866 * * * * 3073 2738 * * * 2296 * * * 2951 * * 41 0 * * * * * * 3564 0 0 F 42 1633 * * * 1981 * * * * 2738 * 2972 * * * * * * * 2767 42 328 2296 * 2000 415 * * 3564 1132 0 A 43 1328 * 2010 * * * * * * * * 2738 * 2296 * * * * * * 43 229 2767 * 2322 322 * * 3564 1000 0 P 44 * * * 1896 * * * * 2127 2951 * * 3012 2767 3292 * * * * * 44 197 2972 * 2322 322 * * 3564 1000 0 A 45 867 * * 2951 * * * * * * * * * 3073 * * * 2296 * * 45 0 * * * * * * 3564 0 0 R 46 1752 * * * * * * * * * 2951 * * 1152 3012 * * * * * 46 0 * * * * * * 3564 0 0 Q 47 * * * * * 1989 * 2972 1340 * * * * 3012 * 3301 * * * * 47 183 3073 * 2000 415 * * 3564 1000 0 S 48 936 * 2738 * * * * * * * * 2296 * * * 3012 * * * * 48 200 2951 * 2000 415 * * 3564 1000 0 L 49 * * * * * * * * * 234 * * * * * * * 2738 * * 49 0 * * * * * * 3564 0 0 E 50 * * 1146 1869 * * * * 2972 * * * * 2767 * * * * * * 50 0 * * * * * * 3564 0 0 N 51 * * 2767 * 2738 * * * * 3073 * 1992 * * * 2111 3301 * * * 51 0 * * * * * * 3564 0 0 X 52 * * * * * * * * * 1140 * * * * * 2536 1419 * * * 52 0 * * * * * * 3368 0 0 R 53 * * * * * * * * 928 * * * * * 1076 * * * * * 53 0 * * * * * * 3564 0 0 Q 54 * * 2972 * * 2738 * * * * 2767 2951 * 3012 * 2182 3292 * * * 54 0 * * * * * * 3564 0 0 K 55 2767 * * * * 1841 * * 3012 2296 * 3073 * * * 2972 * * * * 55 0 * * * * * * 3564 0 0 L 56 * * * * * * * * * 0 * * * * * * * * * * 56 0 * * * * * * 3564 0 0 E 57 1989 * * 1433 * * * * * * * * * 2767 * 2115 * * * * 57 0 * * * * * * 3564 0 0 E 58 1912 * * 3012 * * * * 2972 * * * * 1841 * * 2296 * * * 58 0 * * * * * * 3564 0 0 X 59 * * * * 0 * * * * * * * * * * * * * * * 59 0 * * * * * * 3368 0 0 K 60 * * * * * * * * 938 * * * * 1866 2296 * * * * * 60 0 * * * * * * 3564 0 0 A 61 1130 * * * * * * * 3073 * * * * * 2767 * 2972 2738 * * 61 0 * * * * * * 3564 0 0 L 62 2127 * 2767 * * * * 2010 * 3012 * * * * * 3292 2738 * * * 62 0 * * * * * * 3564 0 0 S 63 * * 1329 2972 * * * * * * * * * * * 1076 * * * * 63 0 * * * * * * 3564 0 0 P 64 * * * * * * 369 * * * * * 3012 3301 * * * * * * 64 0 * * * * * * 3564 0 0 G 65 2738 * 2296 * * 1981 * * * * * * * * * 2767 * 2021 * * 65 0 * * * * * * 3564 0 0 P 66 * * 2767 * * 1152 * * * * * 1841 3012 * * * * * * * 66 0 * * * * * * 3564 0 0 X 67 2536 * * * * * * 1339 * 2777 2826 * * * * * * 2783 * * 67 0 * * * * * * 3368 0 0 N 68 * * 2115 2972 * * * * * * * 2145 * * * 1896 * 2767 * * 68 0 * * * * * * 3564 0 0 P 69 3292 * * * * * * * * * * * 1084 * 2767 2951 2738 * * * 69 0 * * * * * * 3564 0 0 D 70 1961 * 1884 3073 * * * * 2738 * * * * * * * 2296 * * * 70 0 * * * * * * 3564 0 0 I 71 * * * * * * 2767 3012 * 1633 * * * * * 2738 1961 * * * 71 0 * * * * * * 3564 0 0 S 72 2296 * * * * * * 1841 * * * * * * * 3012 * 1347 * * 72 0 * * * * * * 3564 0 0 R 73 * * 1298 3073 * 2296 * * * * * * * * 3012 2767 * * * * 73 0 * * * * * * 3564 0 0 E 74 1412 * 2738 1884 * * * * 3301 * * * * 3292 * * * * * * 74 0 * * * * * * 3564 0 0 V 75 * * * * * * * 1051 * * * * * * * * * 951 * * 75 0 * * * * * * 3564 0 0 L 76 3292 * * * * 2767 * * * 3012 * * * * * 2972 2182 * * 1841 76 0 * * * * * * 3564 0 0 S 77 * * 2296 * * * * * 2972 2767 * 1841 * * 3073 3012 * * * * 77 0 * * * * * * 3564 0 0 N 78 2767 * 3073 * * * * * * * * 3012 * * * 1051 2972 * * * 78 0 * * * * * * 3564 0 0 W 79 * * * * * * * * * * * * * * * 1841 * * 472 * 79 0 * * * * * * 3564 0 0 Q 80 * * 3292 3301 2951 * * * * * * * * 1884 * 2021 * * * 2738 80 0 * * * * * * 3564 0 0 A 81 3012 * * * * * * * * * * 1146 * 1752 * * 2972 * * * 81 0 * * * * * * 3564 0 0 L 82 2296 * * * * * * * * 328 * * * * * * * * * * 82 0 * * * * * * 3564 0 0 L 83 * * * * 2738 * * 1152 * 1884 * * * * * * * * * 2951 83 0 * * * * * * 3564 0 0 E 84 2972 * 2767 3012 * * * * * * * 2951 * * * 1992 3073 3292 * * 84 0 * * * * * * 3564 0 0 K 85 * * * 2738 * * * * 1884 * * * * 1633 * 2951 2972 * * * 85 0 * * * * * * 3564 0 0 G 86 713 * * * * 1359 * * * * * * * * * * * * * * 86 0 * * * * * * 3564 0 0 V 87 * * * * * * * 1850 * 1513 * * * * * * * 1426 * * 87 0 * * * * * * 3564 0 0 V 88 * * 2972 1912 * * * 2296 * 2951 * * * * * * * 1869 * * 88 0 * * * * * * 3564 0 0 P 89 * * * * * * * * * * * * 0 * * * * * * * 89 0 * * * * * * 3564 0 0 Q 90 * * * * * * * * * * 191 * * 3012 * * * * * * 90 0 * * * * * * 3564 0 0 X 91 * * * * 1801 * * * * 817 * 2783 * * * * * * * * 91 0 * * * * * * 3368 0 0 Q 92 2972 * 2738 2951 * * * * * * * 2296 * 1359 * * * * * * 92 0 * * * * * * 3564 0 0 L 93 1056 * * * * * * * * 3012 * * * * 3073 2951 2767 * * * 93 0 * * * * * * 3564 0 0 A 94 580 * * * * * * * * 2972 * * * * * 2296 * * * * 94 0 * * * * * * 3564 0 0 Q 95 * * * * * * 2767 * 2951 * * * * 1503 1989 * * 3073 * * 95 0 * * * * * * 3564 0 0 Q 96 1059 * 3073 * * * * * * * * * * 1869 2972 * * * * * 96 0 * * * * * * 3564 0 0 G 97 * * * * * 1076 * * 2010 * * 1850 * * * * * * * * 97 0 * * * * * * 3564 0 0 S 98 * * 2972 * * * 3301 * 3073 2767 * 1841 * * 3292 3012 * * * * 98 0 * * * * * * 3564 0 0 L 99 * * * * 1633 * 2738 * * 3012 * * 2767 * * * 2951 * * 2972 99 0 * * * * * * 3564 0 0 T 100 * * 1082 1866 * * * * * * * 2951 * * * * 3012 * * * 100 0 * * * * * * 3564 0 0 A 101 1869 * * 1633 * 1961 * * * * * * * * * * 2767 * * * 101 0 * * * * * * 3564 0 0 W 102 * * * * 1961 * * * * * * * * * * * 2767 * 3012 1082 102 0 * * * * * * 3564 0 0 S 103 2738 * 3073 2951 * * * * * * * * * 2296 2972 3012 2767 * * * 103 0 * * * * * * 3564 0 0 E 104 * * * 3012 * * 2296 * 1896 * * * * 1866 * * 2951 * * * 104 0 * * * * * * 3564 0 0 H 105 * * 3301 * * * 1884 1961 * 2738 * * * * * * * * * 2178 105 0 * * * * * * 3564 0 0 A 106 2042 * * * 2972 * * * 2951 * 2738 * * * * * * * * 1513 106 0 * * * * * * 3564 0 0 S 107 2951 * * * * * * * 3073 2296 * * * 2767 2972 1869 * * * * 107 0 * * * * * * 3564 0 0 T 108 * * 1146 2738 * * * * * * * * * * * 2972 3012 * * 2767 108 0 * * * * * * 3564 0 0 V 109 * * * * * * 2767 * 1841 * * * * * * * * 801 * * 109 0 * * * * * * 3564 0 0 T 110 * * * * 2767 * * * * * * * * * * * 3012 3073 * 713 110 0 * * * * * * 3564 0 0 P 111 * * * * * * * * * 2951 * 2738 801 * * * 2767 * * * 111 0 * * * * * * 3564 0 0 A 112 1610 * * * * * * * * * * * 1231 * * 2972 * 3073 * * 112 0 * * * * * * 3564 0 0 L 113 * * * * 3073 * * 2972 * 408 * * * * * * * * * * 113 0 * * * * * * 3564 0 0 S 114 2296 * * * * * * * * * * * * * 1231 1433 * * * * 114 0 * * * * * * 3564 0 0 R 115 * * * * * * * * * 2127 * * * 2006 1426 * * 2738 * * 115 0 * * * * * * 3564 0 0 A 116 1136 * 2951 * * * * * 2738 * * * * 3073 2767 * * * * * 116 0 * * * * * * 3564 0 0 F 117 * * * * 0 * * * * * * * * * * * * * * * 117 0 * * * * * * 3564 0 0 G 118 * * * 2767 * 1136 * * * * * 3073 * * * 2951 2738 * * * 118 0 * * * * * * 3564 0 0 A 119 1981 * * 2972 * * 2767 * * * * 2296 * * * * 2738 3073 * * 119 0 * * * * * * 3564 0 0 S 120 1841 * 2972 * * * 3292 * * * * 3301 * * * 2042 2767 * * * 120 0 * * * * * * 3564 0 0 A 121 3012 * * * 3073 * * 1298 * 2767 * * * * * * * 2296 * * 121 0 * * * * * * 3564 0 0 E 122 2296 * 2951 3012 * * * * 2972 * * 2738 * * * 2767 3073 * * * 122 0 * * * * * * 3564 0 0 R 123 * * * 2738 * * * * 2951 * * 3073 * 2296 1328 * * * * * 123 0 * * * * * * 3564 0 0 F 124 * * * * 2042 * * * * * * * * * * * * * * 401 124 292 * 2450 * * * * 3564 0 0 S 125 * * * * * * * * * * * 993 * * * 1007 * * * * 125 0 * * * * 0 * 2556 0 1000 H 126 1884 * 2004 * * * 2044 * * * * 2076 * * * * * * * * 126 0 * * * * * * 2418 0 0 E 127 * * * 1628 * * * * 564 * * * * * * * * * * * 127 0 * * * * * * 2108 0 0 A 128 0 * * * * * * * * * * * * * * * * * * * 128 0 * * * * * * 1538 0 0 G 129 * * * * * 0 * * * * * * * * * * * * * * 129 0 * * * * * * 1538 0 0 A 130 1070 * * * * * * * * * * * * * * 933 * * * * 130 0 * * * * * * 1538 0 0 X 131 * * * * * * * * * * * * * * * * 0 * * * 131 0 * * * * * * 1000 0 0 L 132 * * * * * * * * * 1070 933 * * * * * * * * * 132 0 * * * * * * 1538 0 0 D 133 * * 0 * * * * * * * * * * * * * * * * * 133 0 * * * * * * 1000 0 0 N 134 * * * * * * * * * * * 0 * * * * * * * * 134 0 * * * * * * 1000 0 0 T 135 * * * * * * * * * * * * * * * * 0 * * * 135 0 * * * * * * 1000 0 0 R 136 * * * * * * * * * * * * * * 0 * * * * * 136 0 * * * * * * 1000 0 0 V 137 * * * * * * * * * * * * * * * * * 0 * * 137 0 * * 0 * * * 1000 0 0 //