HHsearch 1.5 NAME c6cwsA_ FAM FILE c6cwsA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6cwsA_.a3m DATE Sat Jul 7 08:25:28 2018 LENG 108 match states, 108 columns in multiple alignment FILT 102 out of 144 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4654 1.0666 SEQ >ss_dssp CCTTTTCSSSSCSCCCCSCCHHHHTTEEEEEEECTTTTCSSCEEEEEESSCEEEECTTCHHHHHHHHHHHTCSSCCSSCCCSCSSSSCCCCSSCSCSCCC CCCCSCCC >sa_dssp EEEEEDEEDECAEECDDEBEDECADEBDDBDDAEEEEDCEDDAABADBEEECCBABBEBCCACDAADDBBECEEDDDBBCCEEBDEDDEEDEEEDEEDED EEEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCC >ss_conf 9665764731101034677753212211579873688888536999946966974797468999999984101454441111124641267655777657 67887899 >Consensus xeaxxPxaxxCClxxsxxxxxrxlkxVxxYriQxtsxxCxxxAiIfxtkxxxiCaxPxxxWVkxxmkxldxkkxxrxxxxxxkxxxxxxxxxxxxxgxxx txxxxxxx >c6cwsA_ SEAILPIASSCCTEVSHHISRRLLERVNMCRIQRADGDCDLAAVILHVKRRRICVSPHNHTVKQWMKVQAAKKNGKGNVCHRKKHHGKRNSNRAHQGKHE TYGHKTPY >UniRef50_Q68A93(25-116:151) C-C motif chemokine 25 n=5 Tax=Eutheria RepID=CCL25_CANFA E=2e-23 s/c=1.18 id=26% cov=85% ------VSEDCCLAYHHRARPRLLMRAQGYQRQEVSGSCNLPAVIFFFpKNKMLCVNPRVNWLPNVFKFLD----NRNNTHSKQHLGSRRNLQDSHLGGQ RS------- >UniRef50_C1BZ70(21-121:186) C-C motif chemokine 8 n=1 Tax=Esox lucius RepID=C1BZ70_ESOLU E=3e-16 s/c=0.85 id=28% cov=63% ------------------------------------GLCPIKAIVFNTKKNtKICADPGMGWVKKIMNKFDENKRIKREQADAKKRPAVTNGPAETNGPA ETNG----- >UniRef50_UPI00004A4F57(41-105:119) PREDICTED: similar to Small inducible cytokine A23 precursor (CCL23) (Macrophage inflammatory protein 3) (MIP-3) (Myeloid progenitor inhibitory factor-1) (MPIF-1) (CK-beta-8) (CKB-8) n=2 Tax=Laurasiatheria RepID=UPI00004A4F57 E=1e-11 s/c=1.09 id=24% cov=58% -EAGIHRPADCC----PNLTPRKIRCENMQDFFKTSSGCSRPGIIFRTKKGRlVCANPYDLEVQNCMR-------------------------------- --------- >UniRef50_C3KIY3(27-104:105) C-C motif chemokine 20 n=1 Tax=Anoplopoma fimbria RepID=C3KIY3_ANOFI E=3e-10 s/c=0.85 id=29% cov=44% ------------------------------TIQTIITSCDIKAVIFHLPGKFVCADPSAKWTQRGMKCINERR--RKNV--------------------- -------- >UniRef50_Q4RUZ0(28-109:116) Chromosome 12 SCAF14993, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4RUZ0_TETNG E=4e-06 s/c=0.64 id=25% cov=52% ------VPADCCLSVTN--AEVIKHAIVDYRRQVAGQGCTLNATILVTRRQKqLCAPASERWVE------------------------------------ --------- >UniRef50_B0ZYR1(8-108:111) CCL21 (Fragment) n=1 Tax=Oryctolagus cuniculus RepID=B0ZYR1_RABIT E=3e-15 s/c=0.82 id=25% cov=92% -------AQDCCLKYS--LRKIPHKVVRSYRKQEPSLGCPISAILFSPRKRsqpELCADPKEPWVQQLMKRLDRPPAPKKQVQACRKDGGASKSGKKGKG CKRTEQPQTP- >UniRef50_Q65YY0(28-95:97) CC chemokine n=1 Tax=Triakis scyllium RepID=Q65YY0_TRISC E=9e-14 s/c=1.15 id=28% cov=62% ------VSTNCCTKVSRKPIPFL---ITHYRIQPELSPCVEAIIFYTVEKGPLCADPTARWVAKRIKAIKAQTNG------------------------- -------- >UniRef50_Q20IK5(34-99:99) CC chemokine SCYA115 n=2 Tax=Otophysi RepID=Q20IK5_ICTPU E=9e-10 s/c=0.98 id=22% cov=55% ---------------------RPLKAIMVTSYSQTSPQCTKQAVLFRTRKGKdVCAKPTDAWVKELIKVLDIKSGNQGSI-------------------- --------- >UniRef50_A9ZPD4(25-84:84) Chemokine CCL-C25s n=2 Tax=Danio rerio RepID=A9ZPD4_DANRE E=1e-06 s/c=0.90 id=25% cov=30% --------------------------------------CSSKGIMVTTPRTQFCVKPDEDWIKPIMEKQ------------------------------- -------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 452 1893 * * * 1 0 * * * * * * 2321 0 0 E 2 * * * 333 * * * * * * * * * * 2279 * * * * * 2 0 * * * * * * 2678 0 0 A 3 281 * * 2500 * * * * * * * * * * * * * * * * 3 0 * * * * * * 2889 0 0 I 4 * * * * * 1313 * 1514 * 2014 * * * * * * * * * * 4 0 * * * * * * 3088 0 0 L 5 * * * * 3199 * * 1389 * 1459 * * * * * * * * * 2780 5 0 * * * * * * 3118 0 0 P 6 * * * * * * 3089 * * * * * 180 * * * * * * * 6 116 * 3691 * * * * 3690 0 0 I 7 * * 4027 * 4285 3692 * 2601 3728 * 4478 * 4138 * 2282 4354 * 2228 * * 7 179 4285 3938 0 * * 0 4394 1000 1000 A 8 1144 * * 4108 * * * * 4274 * * * 2666 * * 2086 * 4487 * * 8 0 * * * * * 0 4550 0 1387 S 9 2731 * * 4615 * * * * * 4620 4746 * 3154 4773 * 2207 1773 3785 * * 9 0 * * * * 973 1027 4792 0 1387 S 10 4994 * 2135 4684 * * * 4675 4930 4578 * 2971 3960 * * 2046 4230 4550 * 4101 10 0 * * * * 0 * 5010 0 1000 C 11 * 91 * * * * * * 4038 * * * * * * * * * * * 11 23 5991 * 0 * * * 5345 1000 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 47 * 4966 * * * * 5345 0 0 T 13 * 5094 * * 3181 * * 5531 5455 1369 5418 * * * 5468 4890 2107 3594 * 4868 13 0 * * * * * 0 5285 0 1000 E 14 3600 * 5173 2421 * 4663 * * 2211 5094 * 3514 5334 3978 3672 3216 4149 * * * 14 25 5888 * 0 * * 0 5285 1000 1000 V 15 * * * 4890 4033 * 4322 * * 3291 4958 * * * * 4380 2966 2090 * 1690 15 69 4424 * 0 * * 0 5285 1491 1000 S 16 * 4890 * * * 5977 3677 5879 3843 5840 * * * 4503 3965 1566 2207 3599 * 5430 16 191 5622 3270 0 * 0 * 5285 1000 1000 H 17 4341 * 3582 5998 * 5151 2552 * 2170 * 5755 4602 4756 4117 2312 5435 * * * 4269 17 36 * 5348 * * * 0 5200 0 2392 H 18 * * 5415 4718 * 3109 3697 4851 2486 * * 3043 3717 3284 2656 4468 5134 * * * 18 235 5315 2999 0 * 2301 327 5155 1000 2658 I 19 5452 * * * 3347 * * 2029 5193 2263 3341 * 2942 * * * 4823 3185 * 5373 19 0 * * * * 1522 617 4797 0 3707 S 20 5076 * * 4120 * 4390 5179 3109 3986 4712 * 4148 2839 * 3510 3068 3015 3418 * * 20 0 * * * * 357 2190 4948 0 3117 R 21 * * 5401 5177 * 5773 * * 2047 4261 * 5509 1761 * 2212 5652 4812 * 4383 * 21 85 5812 4661 0 * 0 * 5110 1000 1000 R 22 5348 * 5369 5382 4040 * * 3780 2538 5741 5379 3678 * 5731 1391 * 4676 4506 * 5840 22 100 * 3901 * * * 0 5361 0 1610 L 23 3598 * 5172 * * * 4471 2312 4985 1852 * * 3371 * * 4110 4109 3033 * * 23 113 * 3736 * * 1340 725 5291 0 2559 L 24 * * * * 4226 * 5545 2533 3448 1238 * * 4021 4158 * * 3775 4437 * * 24 122 4907 4393 0 * 969 1031 5279 1000 2948 E 25 * * 4249 4330 * * 4230 * 1923 * 3982 4896 5230 3492 1820 * * 4158 * 5108 25 87 * 4088 * * 2335 319 5318 0 2556 R 26 3626 4636 5529 * * * 4538 4781 2442 3472 4946 3177 3463 * 2398 5915 * 4432 * 5854 26 0 * * * * 736 1323 5244 0 2992 V 27 3007 * * 3812 * * * 1473 * 4866 * * * * * * * 1286 * * 27 0 * * * * * 0 5317 0 1828 N 28 4887 * 5930 4065 * * * 3901 3149 4763 3609 3338 * 3893 3155 5068 3200 2714 5499 * 28 0 * * * * 1415 678 5317 0 1828 M 29 * * 4928 5967 * 2318 4098 * 5832 4897 4339 4629 * 5646 3035 1684 4667 4093 * * 29 0 * * * * * 0 5324 0 1492 C 30 4067 5314 * * 4483 * * * 4897 * * * * 4758 * * 5057 3059 4136 754 30 0 * * * * 0 * 5324 0 1492 R 31 5652 * 4987 2936 * * 5451 5182 5116 * * 5530 * 4721 1297 2467 3738 * * 5937 31 99 * 3908 * * * * 5340 0 0 I 32 * * * 6125 3864 * 6037 1711 5667 2460 4566 * * 3749 3377 5484 * 3525 * 3782 32 0 * * * * 1552 602 5212 0 2012 Q 33 * * * 5574 4927 * * * 4366 * * * * 277 * 5267 * * * 4434 33 0 * * * * 0 * 5195 0 1672 R 34 * * 4290 2126 4813 5941 * 4850 3873 * * 5087 4726 4269 2553 4073 2651 4137 * * 34 30 * 5599 * * * * 5161 0 0 A 35 3353 * * 3519 * 6426 * 4664 4140 5467 6229 5484 4888 * 5407 3086 1536 2954 * * 35 43 * 5099 * * 0 * 5142 0 1000 D 36 4437 * 2695 4424 * 3484 * 6057 * 4004 * 3333 6194 5308 5264 1756 3162 6146 * * 36 0 * * * * 0 * 5328 0 1549 G 37 4033 * * 3991 * 1427 6052 * 6028 3295 * * 4372 4468 4253 2487 4399 * * * 37 17 * 6398 * * * * 5067 0 0 D 38 3792 * 2912 4625 * 2228 6410 * 5110 5526 4490 5401 3143 3719 3830 3183 * 4616 * * 38 0 * * * * 0 * 4919 0 1000 C 39 * 0 * * * * * * * * * * * * * * * * * * 39 29 * 5639 * * * * 4451 0 0 D 40 5767 * 3472 5154 * 4438 3340 5402 5948 5525 * 2781 2801 * 4176 2760 3581 3809 * 6624 40 19 * 6256 * * 0 * 4438 0 1394 L 41 * * * 4849 * * 6872 1641 2663 2466 5804 3791 5882 6020 3880 5698 4793 4280 * * 41 0 * * * * 0 * 4429 0 1000 A 42 3111 * 2863 4125 * * 6610 * 2898 6648 * 3399 2462 4045 3393 4321 4237 * * * 42 0 * * * * * * 4443 0 0 A 43 444 * * 5961 * 2804 5702 4868 * * * * * * * 5884 * 4816 * * 43 0 * * * * * * 4442 0 0 V 44 6091 * * 5985 5903 * * 1201 * 4016 * * * * * * 3752 1389 * * 44 0 * * * * * * 4442 0 0 I 45 * * * * 3842 * * 1031 * 4405 4354 * * * 5821 * * 1612 * * 45 0 * * * * * * 4442 0 0 L 46 * * * 4816 679 * * * * 1894 * * * * * * * 4766 * 4868 46 210 2884 * 0 * * * 4442 2834 0 H 47 5961 * * 5763 5689 * 2408 3462 5848 4447 6975 6173 * 6617 6128 4804 1644 3286 6828 3468 47 66 4490 * 649 1465 * * 4442 1488 0 V 48 5615 * 4816 * 3625 * * 5287 6155 2797 5173 * 5777 * * 6471 1126 2609 * * 48 131 3528 * 0 * * * 4442 2553 0 K 49 4449 * * 3929 * 4760 * * 1183 5903 * 3965 4105 4883 2220 6726 6111 * * * 49 143 3402 * 204 2926 * * 4442 2906 0 R 50 * * 4618 5192 5383 1947 * * 1566 * * 4427 * 3982 2314 * * * * * 50 178 3104 * 89 4065 * * 4442 2539 0 R 51 5665 * * 4616 * 2617 6430 6851 2439 6157 5253 3550 * 4576 1695 5899 4172 * * 5422 51 104 3842 * 507 1755 * * 4444 2590 0 R 52 6661 * 6077 3579 5841 * 5696 * 2378 5322 6514 4188 4562 3180 2090 3882 4019 4738 * 5868 52 217 2839 * 0 * * * 4444 2828 0 I 53 4746 * * * 3224 * * 1792 6238 2110 5866 * * * * * * 1843 * 5253 53 13 6830 * 0 * * * 4444 1000 0 C 54 * 53 * * * * * * * * * * * * 4787 * * * * * 54 0 * * * * * * 4444 0 0 V 55 1002 * * * * 4587 * 4417 * 5845 4683 * * * * 3506 4038 2272 * * 55 0 * * * * * * 4335 0 0 S 56 * * 1263 * * * 3692 * 3630 * * 1790 4258 * 5181 5205 5100 * * * 56 0 * * * * * * 4317 0 0 P 57 5654 * * * * * * 5785 * * * * 130 * * 5065 5774 * * * 57 14 6651 * 1000 1000 * * 4317 1000 0 H 58 5207 * 3470 3171 * 4896 5172 * 2486 * * 3150 * 3853 3653 2871 3413 5995 * 5376 58 0 * * * * * * 4480 0 0 N 59 3436 * 1955 2401 * 5752 * * 4125 5183 6271 2645 * 4253 * 3481 * 4570 * * 59 0 * * * * * * 4475 0 0 H 60 5733 * 3048 4106 * 6251 6116 * 2376 5048 5392 4189 2452 5045 2331 4691 5464 * * * 60 0 * * * * * * 4468 0 0 T 61 * * * 5078 * 5066 * * 5709 * * 5392 * * 5277 3855 4502 * 399 * 61 0 * * * * * * 4468 0 0 V 62 4376 * * * * * * 4119 * 3473 * * * * * * 4538 394 * * 62 0 * * * * * * 4468 0 0 K 63 3866 * * 4898 * * * 5959 1447 6009 6453 5616 5774 1613 3817 5338 5217 * * * 63 0 * * * * * * 4468 0 0 Q 64 * * 2940 2780 * 6157 * * 2105 * * 3643 4433 3073 2371 5123 6588 * * * 64 0 * * * * * * 4437 0 0 W 65 2547 4814 * * 5455 6087 6187 3322 * 2293 * * * * 4429 5246 5193 3792 3344 2580 65 0 * * * * * * 4484 0 0 M 66 * * * * 3822 * * 1917 * 3741 1002 * * * * * 5875 3768 * * 66 35 * 5368 * * * * 4484 0 0 K 67 * * * 3271 * * * * 1154 4738 * 4690 * 3033 2108 * 5911 * * * 67 0 * * * * * 0 4425 0 1000 V 68 2592 4869 * * 3169 * 3989 4459 2124 4753 * 4375 * 4894 4116 3929 * 3606 * 5239 68 0 * * * * 0 * 4558 0 1000 Q 69 * * * 4553 4688 * * 2947 * 1264 5010 * * 2687 * 4865 * 2721 * * 69 0 * * * * * * 4606 0 0 A 70 4854 * 1173 2129 * * * * 3378 * * 4609 * 3210 * * 4382 * * * 70 139 * 3443 * * * * 4458 0 0 A 71 2085 * * 2981 * * * 4855 3740 4370 * * * * 2434 2438 3797 4704 * * 71 0 * * * * 1420 675 4412 0 1991 K 72 * * * * * * * * 944 * * 4480 4640 3139 1828 * * * * * 72 50 * 4887 * * * 0 4385 0 1582 K 73 * * * * * * 4367 * 1088 3897 4758 4585 4447 * 3458 3690 3048 * * * 73 85 * 4122 * * * 0 4325 0 2094 N 74 3196 * 4382 * * 4297 3671 * * 3923 * 1823 * * 3062 3416 3375 4181 * * 74 0 * * * * 1930 439 4138 0 2170 G 75 4205 * * * * 1113 * 4036 3229 * * 3115 4177 * * * 2784 * * * 75 0 * * * * 469 1848 4244 0 1873 K 76 * * * * * * * * 1717 * * * * 2938 1002 3919 * * * * 76 0 * * * * * 0 3935 0 1000 G 77 * * * 2444 * 2125 * * 1772 * * 2813 * 3761 3679 * * * * * 77 0 * * * * * 0 3753 0 1000 N 78 * * * 2471 * * 3301 * 3609 * * 1134 * 3516 * 3426 * * * * 78 0 * * * * * 0 3661 0 1000 V 79 3609 * * * * * * 3426 * 3301 3710 3537 4050 3407 * * 3462 1664 * * 79 0 * * * * * 0 3661 0 1000 C 80 3139 2631 * * * * 3091 2284 * 3237 * * * 3171 * 3209 * 3699 * * 80 0 * * * * * 0 3632 0 1000 H 81 3171 * 3139 * * * 3539 * * * 3237 * 2249 3277 * 2375 3699 * * * 81 113 * 3729 * * 0 * 3632 0 1000 R 82 3204 3231 * 3692 * * * * 3115 * * * * * 1375 * 3238 3315 * * 82 0 * * * * * 0 3666 0 1000 K 83 3110 * * * * 3193 * * 921 * * * * 2953 3089 * * * * * 83 0 * * * * * 0 3514 0 1000 K 84 * * * 3193 * * 2953 * 1162 * * * 3043 * 3110 3689 * * * * 84 0 * * * * * 0 3514 0 1000 H 85 3110 * 1679 * * * 2301 * * 2953 * * * * 3077 * 3043 * * * 85 0 * * * * * 0 3514 0 1000 H 86 * * * * * 829 2995 * 3689 * * * 3077 * * * * 3110 * * 86 0 * * * * 0 * 3514 0 1000 G 87 2146 * * * * 873 * * * * * * * * * 3050 3222 * * * 87 0 * * * * * * 3729 0 0 K 88 3160 * * * * * * * 1516 * * * * 3222 3050 * 3561 2146 * * 88 0 * * * * * * 3729 0 0 R 89 3544 * * * 3383 * * * 2198 * * * * 3003 2168 2990 2971 * * * 89 0 * * * * * * 3662 0 0 N 90 * * * 3383 * 3033 * * 2990 * * 1515 * 3385 3544 3003 * * * * 90 0 * * * * * * 3662 0 0 S 91 * * * * * 2971 * * 2461 2966 * * 2198 * * 2183 3003 * * * 91 0 * * * * * * 3662 0 0 N 92 * * * * * 2241 * * * 3383 * 2190 2971 2966 * 3385 * 3033 * * 92 0 * * * * * * 3662 0 0 R 93 2971 * 2966 * * * * * 2241 * * * * 3033 2395 * 2181 * * * 93 0 * * * * * * 3662 0 0 A 94 2190 * * 2971 * 3383 * * 2174 * * 3544 * * 3033 2966 * * * * 94 0 * * * * * * 3662 0 0 H 95 * * 3135 * * 1502 1972 * * * * * * * * * 2806 * * 2887 95 0 * * * * * * 3404 0 0 Q 96 * * * * * * * * 2054 2771 * 2806 2887 2179 3135 * * * * * 96 0 * * * * * * 3404 0 0 G 97 * * * * * 349 * * 2217 * * * * * * * * * * * 97 0 * * * * * * 3404 0 0 K 98 * 2842 * * * 1942 * * 3204 * * 2887 1969 * 3303 * * * * * 98 0 * * * * * * 3404 0 0 H 99 2806 * * * * * 1628 * 2842 * * * * 1828 * * 3154 * * * 99 0 * * * * * * 3404 0 0 E 100 * * * 1832 * * * * * * * * * * 1643 * 1325 * * * 100 0 * * * * * * 3255 0 0 T 101 * * * * * * * * * * * * 2969 * * 2602 499 * * * 101 0 * * * * * * 3255 0 0 Y 102 * * * 2171 * * * * * * * 2162 * 2366 2468 * * * * 2476 102 0 * * * * * * 2628 0 0 G 103 * * * * * 744 * * 2468 * * * * 2171 * * * * * * 103 0 * * * * * * 2628 0 0 H 104 * * * * * * 751 * * * * * 1301 * * * * * * * 104 0 * * * * * * 1860 0 0 K 105 * * * * * * * * 1714 * * * * 1301 1788 * * * * * 105 0 * * * * * * 1860 0 0 T 106 * * * * * * * * * * * * * * * * 0 * * * 106 0 * * * * * * 1860 0 0 P 107 * * * * * * * * * * * * 0 * * * * * * * 107 0 * * * * * * 1658 0 0 Y 108 * * * * * * * * * * * * * * * * * * * 0 108 0 * * 0 * * * 1000 0 0 //