HHsearch 1.5
NAME  c6bliI_
FAM   
FILE  c6bliI_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c6bliI_.a3m 
DATE  Sat Mar  3 08:31:45 2018
LENG  28 match states, 28 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4855  3.3735 
SEQ
>ss_dssp
CCCCSSSCCBGGGCTTCHHHHHHCBCCC
>sa_dssp
EEEDEEEECDBEEBEEDEEBDEEBDEEE
>ss_pred
CCEEEEEEEEEEEECCCHHHHHHHHHCC
>ss_conf
9402320122111078877999972083
>Consensus
xhfevfnfvpcsicxnnxxcxxickxip
>c6bliI_
FHFEVFNFVPCSICSNNPTCWAICKRIP
>UniRef50_O36633(163-190:299) Major surface glycoprotein G n=1299 Tax=Pneumovirus RepID=GLYC_HRSVB  E=3e-08 s/c=2.12 id=72% cov=104%
YHFEVFNFVPCSICGNNQLCKSICKTIP
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
F 1    *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1
       0	*	*	*	*	*	*	1189	0	0	

H 2    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1189	0	0	

F 3    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1189	0	0	

E 4    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1189	0	0	

V 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	5
       0	*	*	*	*	*	*	1189	0	0	

F 6    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1189	0	0	

N 7    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1189	0	0	

F 8    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1189	0	0	

V 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	9
       0	*	*	*	*	*	*	1189	0	0	

P 10   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1189	0	0	

C 11   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1189	0	0	

S 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	12
       0	*	*	*	*	*	*	1189	0	0	

I 13   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1189	0	0	

C 14   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1189	0	0	

S 15   *	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	15
       0	*	*	*	*	*	*	1189	0	0	

N 16   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1189	0	0	

N 17   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1189	0	0	

P 18   *	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1189	0	0	

T 19   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	19
       0	*	*	*	*	*	*	1189	0	0	

C 20   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1189	0	0	

W 21   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	21
       0	*	*	*	*	*	*	1189	0	0	

A 22   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	22
       0	*	*	*	*	*	*	1189	0	0	

I 23   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1189	0	0	

C 24   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1189	0	0	

K 25   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1189	0	0	

R 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	1000	*	*	*	26
       0	*	*	*	*	*	*	1189	0	0	

I 27   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1189	0	0	

P 28   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	28
       0	*	*	0	*	*	*	1189	0	0	

//