HHsearch 1.5
NAME  c6bliF_
FAM   
FILE  c6bliF_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c6bliF_.a3m 
DATE  Sat Mar  3 08:30:37 2018
LENG  28 match states, 28 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4734  3.0277 
SEQ
>ss_dssp
CCCCCSSSCCBGGGCSSCHHHHHHCBCC
>sa_dssp
EEEEDEEEECDBEEBEEDEECDEEBDEE
>ss_pred
CCCEEEEEEEEEEEECCCHHHHHHHHCC
>ss_conf
9303453113311107888799986309
>Consensus
dxhfevfnfvpcsicxnnxxcxxickxi
>c6bliF_
DFHFEVFNFVPCSICSNNPTCWAICKRI
>UniRef50_O36633(162-189:299) Major surface glycoprotein G n=1299 Tax=Pneumovirus RepID=GLYC_HRSVB  E=4e-08 s/c=2.12 id=72% cov=104%
DYHFEVFNFVPCSICGNNQLCKSICKTI
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
D 1    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1189	0	0	

F 2    *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	2
       0	*	*	*	*	*	*	1189	0	0	

H 3    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1189	0	0	

F 4    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1189	0	0	

E 5    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1189	0	0	

V 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	6
       0	*	*	*	*	*	*	1189	0	0	

F 7    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1189	0	0	

N 8    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1189	0	0	

F 9    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1189	0	0	

V 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	10
       0	*	*	*	*	*	*	1189	0	0	

P 11   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1189	0	0	

C 12   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1189	0	0	

S 13   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	13
       0	*	*	*	*	*	*	1189	0	0	

I 14   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1189	0	0	

C 15   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1189	0	0	

S 16   *	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	16
       0	*	*	*	*	*	*	1189	0	0	

N 17   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1189	0	0	

N 18   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1189	0	0	

P 19   *	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1189	0	0	

T 20   *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	20
       0	*	*	*	*	*	*	1189	0	0	

C 21   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1189	0	0	

W 22   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	22
       0	*	*	*	*	*	*	1189	0	0	

A 23   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	23
       0	*	*	*	*	*	*	1189	0	0	

I 24   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1189	0	0	

C 25   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1189	0	0	

K 26   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1189	0	0	

R 27   *	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	1000	*	*	*	27
       0	*	*	*	*	*	*	1189	0	0	

I 28   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	0	*	*	*	1189	0	0	

//