HHsearch 1.5 NAME c6az1S_ FAM FILE c6az1S_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6az1S_.a3m DATE Sat Dec 9 08:24:59 2017 LENG 54 match states, 54 columns in multiple alignment FILT 35 out of 39 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4501 2.0320 SEQ >ss_dssp CCCTTHHHHSCCSTTTCCCTTTCCCSSEECGGGCCEEHHHHHTSHHHHTCCCCC >sa_dssp EEEEDEEEEEEEDEEDCDAEDDEDDEDCCDEEECCBAEDBCEECCEEDEDDEEE >ss_pred CCHHHHCCCCCCCCCCCEEEECCCCCCEEEHHCHHHHHHHHHHHHHHCCCEECC >ss_conf 941321488665862101123137686220122178899999675411901049 >Consensus xxxwxsxprxxxGkGsRxCrxCgxxxglIrkYgLxlCRqCFRExAxdiGFxKyr >c6az1S_ LDQWRSRQKIGMGKGARCCVICSNQKALIRKYELNVCRQCFRENAEHIGFTKLR >UniRef50_P90983(7-55:56) Ribosomal protein, small subunit protein 29 n=4 Tax=Caenorhabditis RepID=P90983_CAEEL E=8e-12 s/c=1.46 id=50% cov=93% ---WFSHPR-KFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKL- >UniRef50_Q5JJG2(6-55:56) 30S ribosomal protein S14P n=11 Tax=Archaea RepID=RS14_PYRKO E=1e-10 s/c=1.35 id=41% cov=94% ---YNKRKPRKFGKGARRCMRCGQYGPIIRIHGLMLCRHCFREVAPKLGFKKY- >UniRef50_Q98SC7(7-56:56) 40S ribosomal protein S29A n=32 Tax=Eukaryota RepID=RS29_GUITH E=4e-10 s/c=1.32 id=51% cov=94% ---WNKHSRT-YGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR >UniRef50_A8B7H6(100-136:137) Ribosomal protein S29A n=2 Tax=Giardia intestinalis RepID=A8B7H6_GIALA E=2e-09 s/c=1.72 id=55% cov=70% ----------------RECRICGNYNSVYRKYGLFICRRCFKENAGKIGFVKL- >UniRef50_Q12ZT7(6-49:50) 30S ribosomal protein S14P n=17 Tax=Archaea RepID=RS14_METBU E=2e-09 s/c=1.44 id=43% cov=81% ----------NFGRGANECKRCGRKQGLVRKYGIYLCRHCFREIAHDMGFEKY- >UniRef50_P58731(8-54:54) 30S ribosomal protein S14P n=10 Tax=root RepID=RS14_AERPE E=2e-08 s/c=1.29 id=52% cov=81% -----------MGRGAQRCQRCGTRDAVIQKYGLYLCRQCFREIAPTLGFRKNR >UniRef50_B5Y3H6(11-61:62) Predicted protein n=2 Tax=Bacillariophyta RepID=B5Y3H6_PHATR E=8e-06 s/c=1.01 id=42% cov=89% -----THPK-NYGKGSRQCRVTGRMGgmGLIRKYGINMKRQVFRERALDMGWEKY- >UniRef50_B9ZHX2(27-64:65) Ribosomal protein S14 n=2 Tax=Halobacteriaceae RepID=B9ZHX2_NATMA E=5e-05 s/c=1.29 id=39% cov=70% ----------------RVCRDTGREQGLIGTYDIWLCRQSFREMARDMGFRKY- >UniRef50_UPI0001C41CC2(5-49:50) ribosomal protein S14P Rps14p n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41CC2 E=5e-10 s/c=1.46 id=45% cov=81% ----------KYGKASKKCSRCGDHSAIVSRYGLNLCRQCFREIAPKIGFKKY- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1096 0 0 D 2 * * 1000 1000 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1096 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1096 0 0 W 4 * * * * 4019 * * * * * * * * * * * * * 583 1885 4 0 * * * * * * 2060 0 0 R 5 * * * * 2980 * * * * * * 1573 * * 2510 * * * 3907 1761 5 0 * * * * * * 2060 0 0 S 6 * * * * * * * * 2427 * * * * * * 497 3245 * * * 6 0 * * * * * * 2194 0 0 R 7 * * * * * * 979 * 3678 * * * * * 1270 * * * * * 7 0 * * * * * * 2277 0 0 Q 8 * * * * * * * * 3127 * * * 519 2925 * 4155 * * * * 8 0 * * * * * * 2277 0 0 K 9 * * * * * * * * 1292 * * * 3356 * 1018 * * * * * 9 640 * 1480 * * * * 2339 0 0 I 10 * * 3047 * * * * 2552 2449 * * 3306 * * 2347 * 2135 * * * 10 516 * 1734 * * 0 * 2224 0 1616 G 11 * * * * * 3253 * * 964 * * 1593 4302 * * * * * * * 11 60 4624 * 0 * 0 * 2459 1000 1404 M 12 3927 * * * 1530 * * * * * 2952 * * * * * * * * 1124 12 98 3927 * 0 * * * 2484 1000 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 2476 0 0 K 14 4722 * * * * * * * 698 * * * 3728 5109 2798 4002 * * * 4834 14 0 * * * * * * 2476 0 0 G 15 3178 * * * * 274 * * * * * * * * * * * 4002 * * 15 0 * * * * * * 2476 0 0 A 16 1568 * * 4002 * * * 4834 * * * * * 4890 * 912 * * * * 16 0 * * * * * * 2476 0 0 R 17 * * * * * * * * 3850 * * 3594 * 4679 306 * * * * * 17 0 * * * * * * 2575 0 0 C 18 * 4978 * 2674 * 4103 5006 * 3468 * * * 5355 2661 2282 3116 * 3260 * 5379 18 0 * * * * * * 2644 0 0 C 19 * 59 * * * * * * * * * * * * * 4631 * * * * 19 0 * * * * * * 2672 0 0 V 20 * * * 4227 * * * * 5326 * 4225 * * 3388 723 4428 4948 3504 * * 20 0 * * * * * * 2574 0 0 I 21 5691 * 3876 * * * * 2578 * * * * * * 1451 5026 * 1520 * * 21 0 * * * * * * 2574 0 0 C 22 * 208 * * * * * * * * * * * * * * 2895 * * * 22 0 * * * * * * 2574 0 0 S 23 2858 * * 4629 * 640 * * * * * * * * * 3053 5113 * * 5026 23 0 * * * * * * 2574 0 0 N 24 * * 3665 * * 5494 3161 * 4753 * * 1757 * 4225 1661 5474 4010 * * * 24 30 5622 * 0 * * * 2574 1000 0 Q 25 * * * 4028 5026 5622 2792 * 2916 * 3913 5577 6309 3089 2277 4994 * * * 2683 25 0 * * * * * * 2574 0 0 K 26 3450 * 3560 * * 3061 2970 * 4122 * * 4356 5622 2664 3233 3279 5474 * 4057 * 26 99 3913 * 1000 1000 * * 2574 1000 0 A 27 2265 * * * * 536 * * * * * * 4225 * * 4356 * * * * 27 0 * * * * * * 2574 0 0 L 28 * * * * * * * 2174 * 736 4948 * * * * * * 2779 * * 28 0 * * * * * * 2574 0 0 I 29 * * * * * * * 352 * * * * * * * * * 2577 * 4356 29 0 * * * * * * 2574 0 0 R 30 * * * * * 2912 * * * * * * * 4994 359 4151 * * * * 30 0 * * * * * * 2574 0 0 K 31 * * * * * * * 4225 475 * 5561 * * 4753 2919 * 4772 * * * 31 45 * 5026 * * * * 2574 0 0 Y 32 * * * * * * 4202 * * * * * * * * * * * * 81 32 0 * * * * * 0 2552 0 1000 E 33 * * 2881 4058 * 508 * * * * * 3996 * * 4712 * * * * * 33 0 * * * * 0 * 2552 0 1000 L 34 * * * * * * * 2049 * 501 4266 * * * * * * * * * 34 0 * * * * * * 2574 0 0 N 35 * * 4465 * 4356 * * * * 4662 2730 1332 * * * 4145 * * 3430 2563 35 0 * * * * * * 2574 0 0 V 36 * 4507 * * * * * 1812 * 1133 3080 * * * * * * 3367 * * 36 0 * * * * * * 2574 0 0 C 37 * 99 * * * * * * 3913 * * * * * * * * * * * 37 0 * * * * * * 2574 0 0 R 38 * * * * * * * * 4227 * * * * * 79 * * * * * 38 0 * * * * * * 2574 0 0 Q 39 * * 4227 * * * 3673 * * * * * * 497 2647 * * * * * 39 0 * * * * * * 2574 0 0 C 40 * 210 * * * * * * * * * * * * * 3869 * 3905 * * 40 0 * * * * * * 2574 0 0 F 41 * * * * 0 * * * * * * * * * * * * * * * 41 0 * * * * * * 2574 0 0 R 42 * * * * * * * * 3284 * * * * * 156 * * * * * 42 0 * * * * * * 2574 0 0 E 43 * * * 117 * * * * * * * * * 4544 * 4835 * * * * 43 0 * * * * * * 2574 0 0 N 44 * * 4835 * * * * 2489 2838 5448 3869 3225 * 5467 3265 * * 2576 * 2695 44 0 * * * * * * 2574 0 0 A 45 152 * * * * * * * * * * * * * * 3322 * * * * 45 0 * * * * * * 2574 0 0 E 46 4322 * * 3911 * 3639 3331 * 3093 3905 * 4560 2601 3344 2675 4118 * * * * 46 0 * * * * * * 2574 0 0 H 47 * * 854 3433 * * 5097 * 2300 4747 * 4237 * * * * 4987 * * * 47 0 * * * * * * 2574 0 0 I 48 * * * * * * * 960 * 1942 2147 * * * * * * * * * 48 0 * * * * * * 2574 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 2574 0 0 F 50 * * * * 100 * * * * * * * * * * * * * 3905 * 50 0 * * * * * * 2574 0 0 T 51 * * 5349 3445 4246 * 4946 3696 1424 * * 5139 * 4603 3360 5071 5044 3387 * 5258 51 0 * * * * * * 2562 0 0 K 52 * * * * * * * * 0 * * * * * * * * * * * 52 0 * * * * * * 2562 0 0 L 53 * * * * 4989 * * * * 1847 * 3812 * * * * * 3908 * 855 53 0 * * * * * * 2499 0 0 R 54 * * * * * * * * * * * * * * 0 * * * * * 54 0 * * 0 * * * 1998 0 0 //