HHsearch 1.5 NAME c6af0P_ FAM FILE c6af0P_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6af0P_.a3m DATE Sat Sep 22 08:34:58 2018 LENG 107 match states, 107 columns in multiple alignment FILT 42 out of 46 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4657 1.8446 SEQ >ss_dssp CTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSGGGTSTHHHHHHHHSSCCCCCCSSSTTCCCCCTTCTTTTTTCCGGGSCCSSCCCCCTTTHHHHSC GGGGCCC >sa_dssp EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEDDDDEDEEEDDEEEEEEEEEEEEDEDEDEEEEDEEDEBCEEEDEEDDEEEEEEEEDEEEDEDEEDE EEEEEEE >ss_pred CCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCC HHHCCCC >ss_conf 9451000311311797689876443137787422343211135557765378760247437830232246100005420013766788778758873248 6750789 >Consensus xxxQdfixkvryxNxLPxpPxxPKxlxxpxxxxxxxxyxxxxxxsxLxkxxxxxlxxdxdlGmplDLxxxxgxxxxdxsxxxxxxxxxxLxpxDxxLLrx xxxxgxx >c6af0P_ MIHQDYIARIRYSNALPPPPIPPKLLDIPNTGLASGQYTAPGFASRLAREQPLNIEADAELGMPLDLVGMPGVFDGDESSIQAPAQPPPVHPHDRPLLRP LSTLGKP >UniRef50_C4R997(7-114:393) RNAP II-associated protein n=1 Tax=Pichia pastoris GS115 RepID=C4R997_PICPG E=1e-19 s/c=0.90 id=31% cov=93% ---QDYIAKVRYQNDLPAPPCPPKLLkyEIEKEAPQKEFLKDSRLLSALfSKDNFRYLMNETSDGLDVNYLRIPGIIENEKSlgklfSSYKNLAIENLHP DDRLLLVDPN----- >UniRef50_C5E1H1(4-108:497) ZYRO0G20922p n=1 Tax=Zygosaccharomyces rouxii RepID=C5E1H1_ZYGRO E=3e-15 s/c=0.79 id=34% cov=94% ---QDYIAKIRYDNrlpAPLLPPRLLKYTINPEEEADSSEL----ITSLYTKTSVTPlIKVNEDLGMPLDLMKIPGMLDHMDTKYLYDFDGVKLQPEDRM LLRDPGVDKLP >UniRef50_B9WCD3(11-118:490) RNA polymerase-associated protein, putative n=3 Tax=Candida RepID=B9WCD3_CANDC E=6e-08 s/c=0.54 id=35% cov=93% -IRQDYIAKVRYTNNLPPPPLNPKFIEYNTTDPISTQQEGEYLISSLFRKENFQNLmerIDDQLGLDLNLINNRGFLSEDKmNESIGKLKYHQLHSNDRE LLR-------- >UniRef50_B8CBV1(83-200:649) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8CBV1_THAPS E=4e-06 s/c=0.45 id=22% cov=96% ---QGFLIAHSFRNAPPRPPVGPCFVGHGLEDILTERWTTYKARNDVEKGHVWKLHAECDLGVKLGVsaMDFEGCYvdpdrrddgegnkdETDGVGGNKP NVIPPLHPDDEALIHWKGSLG-- >UniRef50_D2VZZ8(139-232:620) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VZZ8_NAEGR E=8e-15 s/c=0.87 id=23% cov=88% LVKSSFLCNMKFQTGLPEILLDPVLLEYPKDFtENFIGYK----TTSLEKNHKFELLTENNLGINMNLIN-PFVYYKDESA--------KLDPEDELLLK PVKSAKK- >UniRef50_Q5KGM6(4-101:440) Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KGM6_CRYNE E=8e-10 s/c=0.66 id=36% cov=90% ----DLLVRVRYLNPLPNPPFP---PKLLNVNTNISRLGEPAYLDQLAATTPLPMLVDSEMGMPLDLNAYDGAWDGKDQSLNPIPDSDRVhHPVDLTLLA PFN----- >UniRef50_A8J601(106-197:502) Paf1 complex component n=1 Tax=Chlamydomonas reinhardtii RepID=A8J601_CHLRE E=3e-12 s/c=0.79 id=32% cov=82% -----FLAHIRFRNDLPEIPSDPKMLVSQIQPEVLSRFG----LTALERQARRDLLTPPNITIsPLDV-----------QRYQVPDQAVPMDPADAALLk ddaRPLAIGGSP >UniRef50_P90783(18-107:425) RNA polymerase II-associated factor 1 homolog n=3 Tax=Caenorhabditis RepID=PAF1_CAEEL E=5e-11 s/c=0.76 id=19% cov=78% ----DFMLKPRFTNTVPDVPFDAKFMTCPFVPLgRFVEFQPAAIY----RDYKHAVICDDDMGLNVDLIDLK--------KYDEDPIETEIDEKDNILL- -------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1601 1090 * * * * * * 2318 * * 1 0 * * * * * * 1812 0 0 I 2 * * * * 3868 * * 1202 * * * * * * * * * 1240 * 3769 2 0 * * * * * * 2973 0 0 H 3 * * * * * * 1325 * 2007 * * * * * 1506 * * * * * 3 0 * * * * * * 2973 0 0 Q 4 4468 * * 4454 * * * * * * * * * 327 4190 4122 * * * * 4 0 * * * * * * 4385 0 0 D 5 * * 777 2097 * 3162 * * * * * * * * * 3817 * * * * 5 0 * * * * * * 4785 0 0 Y 6 * * * * 1230 * * 5431 * 3033 * * * * * * * * * 1223 6 0 * * * * * * 5048 0 0 I 7 * * * * * * * 1094 * 1398 4343 * * 3929 * * * 4754 * * 7 0 * * * * * * 5048 0 0 A 8 1330 1832 5020 * * * * 3457 * 3561 * * * * * 5096 * 3547 * * 8 0 * * * * * * 5048 0 0 R 9 4446 * * 4468 * * 3911 * 1551 * * 4958 4131 * 1542 4730 5012 * * * 9 0 * * * * * * 5048 0 0 I 10 4359 * * * 4468 * 3918 2033 * 2773 4958 * 4025 * * * * 1491 * * 10 0 * * * * * * 5048 0 0 R 11 4468 * * 4564 * * * * 1704 * * * * 4740 937 4446 * * * * 11 0 * * * * * * 5048 0 0 Y 12 * * * * 1416 * * * * * * * * * * * * * * 678 12 0 * * * * * * 5048 0 0 S 13 5630 5889 4610 * * * 4251 3696 4740 4179 * * 5020 2345 1742 3191 3978 * * * 13 0 * * * * * * 5048 0 0 N 14 * * * * * * * * * * * 47 * * * * 4958 * * * 14 60 4610 * 1585 585 * * 5048 1000 0 A 15 2270 * 2328 3592 * 4958 * * * * * 2939 2822 * * 3275 3275 * * * 15 0 * * * * * * 5048 0 0 L 16 * * * * * * * 5020 * 313 * * 2922 * * * * 4957 * * 16 0 * * * * * * 5048 0 0 P 17 * * * * * * * * * 4610 * * 60 * * * * * * * 17 0 * * * * * * 5048 0 0 P 18 3173 * 2180 3270 * * * * * 4259 * 4890 1776 * 3457 * 5702 3706 * * 18 0 * * * * * * 5048 0 0 P 19 * * * * * * * 2473 * 5511 * * 551 * * 4852 * 3627 * * 19 0 * * * * * * 5048 0 0 P 20 * * 5759 4422 * * * * * 4958 * * 383 4449 * 4172 4852 * * * 20 0 * * * * * * 5048 0 0 I 21 3473 3397 * * 1948 * * 3990 * 2225 4730 4711 * * 4610 4632 * 3457 * 5020 21 0 * * * * * * 5048 0 0 P 22 * * 1930 5609 * 3457 * * * 4610 * 3205 1371 3473 * * * * * * 22 49 * 4890 * * * * 5048 0 0 P 23 4897 * * * * * * * * 3606 * * 358 * * * 4216 * 4314 * 23 0 * * * * * 0 4974 0 1000 K 24 * 3414 * * * * * * 247 * * * * * 5034 * * 4931 * * 24 0 * * * * * 0 4974 0 1000 L 25 * * * * 1294 * * * * 1301 3028 * * * * * * * 5543 4569 25 0 * * * * 0 * 4974 0 1000 L 26 * * * * * * * 2840 * 995 3293 * 4890 * * * 4610 2458 * * 26 67 4452 * 1291 758 * * 5048 1534 0 D 27 5543 * 2821 2620 * 3457 4445 4610 2842 * * 3644 4741 3907 6816 * 3517 3704 * * 27 0 * * * * * * 5048 0 0 I 28 * 4220 * * * * 4446 1572 * 3448 * 4610 * * 4146 4348 4740 * * 1793 28 28 * 5699 * * * * 5048 0 0 P 29 * * * 4314 * 4425 * * 4771 4862 * 2744 952 5090 3842 5589 4431 * * * 29 0 * * * * * 0 5042 0 1000 N 30 * * * 3513 3305 * 3848 4235 3647 3116 * 2682 * * 4771 4314 2933 3060 * * 30 79 * 4232 * * * 0 5042 0 1000 T 31 * * 2168 1621 * * 5219 * * 6414 * * 5083 5048 * 5201 2213 3171 * * 31 34 * 5427 * * 1494 633 4976 0 1706 G 32 3341 6422 3615 3332 4162 2891 * * 3308 * * 3114 2033 5772 4681 * * * * * 32 104 4875 4827 0 * * 0 4975 1000 1787 L 33 3929 * 3691 2338 * * * 3313 4101 2480 5053 4273 3444 5476 4623 5409 4041 * * * 33 135 4085 5053 769 1276 462 1868 4922 1541 2102 A 34 3099 * 3021 5638 * * * 4089 5090 4359 4384 3818 4130 5214 2222 3766 5197 3553 * * 34 58 * 4658 * * * 0 4988 0 1404 S 35 * * * * 2447 * * 4296 4318 2230 * 5136 3803 * * 2162 3623 4071 * 4709 35 0 * * * * 1816 482 4970 0 1821 G 36 5186 * 5580 3022 5277 3400 * 3904 5333 5444 * * 5040 5336 5005 2158 2250 3778 * * 36 0 * * * * 0 * 5020 0 1610 Q 37 * * 4445 2683 5284 4958 5096 * 3119 * * * * 1897 1859 4265 * * * * 37 73 5418 5280 1000 1000 * * 5048 1000 0 Y 38 * * * * 2831 * * * * 2441 * * * 4026 * 4460 4350 * 4429 1080 38 144 * 3393 * * 0 * 5024 0 1000 T 39 3128 * * 3098 * 3328 * * 2615 4635 * 4945 * 4267 3811 3572 2146 * * * 39 321 * 2326 * * * 0 4955 0 1893 A 40 4366 * 2913 4438 * 4627 4229 4808 4762 5131 * 2780 3430 * 3931 3216 3212 4101 * * 40 124 * 3600 * * * 0 4801 0 3014 P 41 3650 * * 3121 * * * * * 4136 * 4794 1534 4204 * 3816 * * * 2048 41 0 * * * * 3056 185 4685 0 3246 G 42 3368 * * 4942 * 2931 4600 * 2638 4263 * 3019 * 3301 3865 3174 4680 * * 4561 42 55 * 4752 * * 1655 551 4718 0 3091 F 43 3085 * * * 1747 * * 2156 * 1999 * * * * * * * 4630 * 3851 43 0 * * * * 172 3156 4785 0 2528 A 44 2172 * * * 5953 * * 3813 * 2554 3669 4382 * * 3396 5413 2770 4205 * 3743 44 50 * 4877 * * 0 * 5001 0 1000 S 45 * * 3179 * * * * * * * * 2710 * * * 927 2245 * * * 45 57 * 4688 * * * 0 4966 0 1000 R 46 2656 * 3703 * * 4527 6056 * * 3431 * 4297 * 4770 3195 1566 3662 * * * 46 0 * * * * 655 1454 4951 0 1726 L 47 * * * * * * * * * 430 4384 * * * * * * 3066 * 3469 47 38 5250 * 0 * * 0 4966 1000 1000 A 48 2072 * * 1320 2870 * * 4388 * * * * * 5149 4555 5250 4556 4727 * * 48 35 5380 * 0 * 0 * 4966 1000 1000 R 49 4862 * * * * * * * 1376 * 4965 * * 4250 1342 4173 * 4446 * * 49 0 * * * * * * 5042 0 0 E 50 * * 3134 2664 * 4442 * 6139 3201 5781 5862 2719 * 3345 3248 4446 3028 * * * 50 0 * * * * * * 5042 0 0 Q 51 5066 * * 2521 5530 4652 2733 * 4250 * * 3383 * 3101 * 4587 4085 * 4229 2597 51 0 * * * * * * 5042 0 0 P 52 5100 * 4652 4724 4345 * * 5615 1664 * * 3201 2511 * 5066 5176 4965 2897 * * 52 43 5093 * 1585 585 * * 5042 1000 0 L 53 * * * * 2304 * 2671 3583 * 2790 * * 3044 * 3661 * 3502 * 3444 4965 53 0 * * * * * * 5042 0 0 N 54 4935 * 3717 2863 * * * * 2394 * 5093 2555 2511 3714 * 4652 5414 * * 4345 54 198 3502 4652 0 * * * 5042 1383 0 I 55 5033 * * * 5065 * * 1621 * 1272 4130 4964 * * * 5369 5287 4029 * * 55 0 * * * * * 0 4938 0 1000 E 56 * * 4676 3133 3862 5065 2592 3593 4547 2015 3581 5122 * 3661 * * * * * 5790 56 123 3611 * 1585 585 * 0 4938 1501 1000 A 57 2384 4100 * 4915 * * * 4964 * 5065 * 3740 * 4366 * * 2873 1339 * * 57 0 * * * * * 0 4938 0 1000 D 58 * * 1054 1244 * * * * * * * 4547 4225 * * * * * * * 58 0 * * * * 0 * 4938 0 1000 A 59 2901 4442 3566 2284 * 6139 5623 5416 * * * 4059 2179 * * 4862 3636 3703 * * 59 0 * * * * * * 5042 0 0 E 60 * * 1116 1679 * * 5017 * * * * 3408 * 4266 * 4345 * * * * 60 0 * * * * * * 5042 0 0 L 61 4642 4436 4345 * 5093 4724 * 5066 * 679 3378 * * * * 5345 * 5505 * * 61 0 * * * * * * 5042 0 0 G 62 * * * * * 44 * * * * * * * * * * 5066 * * * 62 0 * * * * * * 5042 0 0 M 63 * * * * * * * 2214 * 2774 1112 * * * * * * 2509 * * 63 44 5056 * 0 * * * 5045 1000 0 P 64 5088 * 3627 5469 * * * * 4438 * * 2880 704 * * * 3811 * * * 64 0 * * * * * * 5045 0 0 L 65 * * * * * * * 1991 * 828 4934 * * * * * * 2713 * * 65 0 * * * * * * 5045 0 0 D 66 4442 * 481 * * 4438 * * * * * 2386 * * * * * * * * 66 59 * 4648 * * * * 5045 0 0 L 67 * * * * * * * * * 341 * * 3663 * * * * 3639 * 4288 67 137 4375 4558 1000 1000 * 0 4940 1000 1000 V 68 4059 * * * * 5221 * 1850 * 2222 2777 4741 * * * 3642 5046 2968 * * 68 146 * 3379 * * * 0 4900 0 1909 G 69 3402 * 2301 4931 * 2582 * * 2939 * * 2009 * 4930 4103 4930 * * * * 69 225 * 2795 * * * 0 4826 0 2633 M 70 * * * * 2549 * * 1606 4772 4167 2440 3196 * * * * * 4735 4933 4483 70 105 * 3833 * * 1480 641 4649 0 3013 P 71 * * 3328 3536 * * * * 4473 * 4900 * 1087 4695 3238 4017 4090 * * * 71 155 * 3294 * * * 0 4860 0 2842 G 72 4071 * 3257 * 4427 630 * * 5081 * * 3654 * * * 4874 * * * * 72 0 * * * * * 0 4618 0 3219 V 73 3020 3810 * * 3276 * * 3560 * 2012 4171 * * * * * 4780 2060 * 4735 73 0 * * * * 2490 283 4618 0 3219 F 74 * * * * 1883 * 4312 3993 4836 2221 4176 * * * * * * 4091 3092 2889 74 84 4137 * 3807 107 * 0 4763 1000 3002 D 75 * * 1910 1622 * * * * 3416 4312 * 4102 * * 3045 4610 * * * 4486 75 188 4963 3469 1000 1000 * 0 4763 1000 3002 G 76 4866 * * 4450 * 1597 4116 3176 3144 * * 3275 * 4677 * 3282 3995 * * * 76 58 4677 * 0 * 1616 570 4550 1000 3421 D 77 * * 680 3458 * 4964 * * 4550 4138 4367 5693 5067 * * * * * * 4164 77 46 4989 * 3322 152 3014 191 4734 1000 3095 E 78 5178 * 2266 1881 * 4192 * * 3004 3506 * * 3190 * * 3487 5217 * * * 78 56 4707 * 0 * 864 1150 4749 1000 2997 S 79 * * 4645 * * * * * 5315 * * 3645 * 3833 5328 847 2689 4350 * * 79 154 3648 5540 2222 348 529 1703 4860 1577 1995 S 80 2089 * * 3947 * 3737 * * 2670 * * 3846 * * 5033 2698 5526 2781 5371 5481 80 85 * 4135 * * * 0 5047 0 1414 I 81 * * 4125 * * 4334 * 2503 * 2363 4147 * * * * 3511 * 4860 * 1541 81 31 * 5533 * * * 0 4997 0 1993 Q 82 * * 4798 4795 * * 5307 4878 4234 2660 4571 2114 * 3286 3044 5852 * 3503 * 4180 82 40 5193 * 0 * 1909 447 4992 1000 2087 A 83 2306 * 2970 4813 * 4889 * 5199 2420 * * * 2944 * * 5325 5315 3169 * 3387 83 0 * * * * * 0 4983 0 1833 P 84 4994 * 2657 * * 4264 * 4092 4889 5073 5419 2874 1167 5929 * 6102 * * * * 84 0 * * * * * 0 4983 0 1833 A 85 2839 * 2938 3349 3387 * * 5262 4448 2505 * 3892 3378 4981 * 4339 4524 * * * 85 0 * * * * * 0 4983 0 1833 Q 86 3715 * 2913 3675 * * 5419 4813 4063 * * 3352 3912 3448 4524 2716 * 2812 * * 86 51 4861 * 2000 415 * 0 4983 1000 1833 P 87 4909 * * 3966 * 4522 4230 3242 5595 4140 * 3980 2128 3863 3988 3581 4322 4981 * 4889 87 0 * * * * 1694 533 4983 0 1833 P 88 4396 * 4779 3202 * * 4903 4330 4124 * * * 1699 * * * 3912 1774 * * 88 0 * * * * 569 1616 4995 0 1582 P 89 3525 * * 3538 * * 4453 * 2348 5821 * 3762 1753 4216 3551 * 4884 5391 * * 89 0 * * * * 0 * 5046 0 1000 V 90 * * * * * * 5508 3393 * 522 3466 * * * * * * 3383 * * 90 51 4851 * 0 * * * 5045 1000 0 H 91 4151 * 1209 4953 * * 1342 * * * * * 5577 4582 * 5522 * * * * 91 0 * * * * * * 5045 0 0 P 92 4289 * 4983 3270 * * * * 4398 * * * 549 5747 * 4991 * 4953 * * 92 0 * * * * * * 5045 0 0 H 93 2640 * 2240 2278 * 4231 3953 4458 2603 * * 4991 * * 5172 * * 4851 * * 93 0 * * * * * * 5045 0 0 D 94 * * 0 * * * * * * * * * * * * * * * * * 94 0 * * * * * * 5045 0 0 R 95 3034 * * 2001 * * 4648 * 5522 3031 4442 4924 * * 1454 * * * * * 95 0 * * * * * * 5045 0 0 P 96 1719 * * 2741 4983 * * 3637 4683 2919 4582 * 4270 4953 5469 5411 4851 4134 * * 96 0 * * * * * * 5045 0 0 L 97 * * * * * * * * * 47 * * * * * * 4953 * * * 97 0 * * * * * * 5045 0 0 L 98 * * * * * * * 4438 * 165 5522 * * * * * 4648 * * * 98 103 3865 * 1473 644 * * 5045 1470 0 R 99 4495 * 3471 * * * 4165 * 2571 * 2835 * * * 1182 * * 4045 * * 99 0 * * * * * * 4842 0 0 P 100 4646 * 2030 4205 * * * * * * * * 1233 * * * 3787 * 2617 * 100 0 * * * * * * 4140 0 0 L 101 * * * * 3889 * * * 2617 1875 * * 1413 * * 4223 * 3881 * * 101 0 * * * * * * 4140 0 0 S 102 3571 * 4677 4640 * 1820 * * 3771 * * 1990 * 4078 * 2563 * * * * 102 0 * * * * * * 4059 0 0 T 103 * * * * * * * 3746 * * 4215 3284 * 2595 * 1434 2916 3312 * * 103 0 * * * * * * 3679 0 0 L 104 3274 * 3228 * * 3577 * * * 861 * * * * * * 2684 * * * 104 0 * * * * * * 3589 0 0 G 105 * * * * * 543 * * 1931 * * * * * 4282 * * * * * 105 0 * * * * * * 3589 0 0 K 106 * * * * * * * * 1249 2733 * 1973 * * 4115 3104 * * * * 106 0 * * * * * * 2858 0 0 P 107 * * * * * * * * * * * * 0 * * * * * * * 107 0 * * 0 * * * 2300 0 0 //