HHsearch 1.5 NAME c6a6iG_ FAM FILE c6a6iG_ COM /bmm/www/servers/phyre2/HH/hhmake -i c6a6iG_.a3m DATE Sat Feb 16 08:12:30 2019 LENG 80 match states, 80 columns in multiple alignment FILT 29 out of 33 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.3941 -0.4025 SEQ >ss_dssp CCCSSCCCGGGHHHHHHHHHHHHHTSSBTTEEEHHHHHHHHTTTCCHHHHHHHHHHHHHHEEEEECTTSCEEEEECGGGC >sa_dssp EECEDEEDEECDEBBDEACDBABEEBEDECCABDECADECBEEECDEECDECBEBBBCCAADCDEDEEDDBBBDBCEEDE >ss_pred CCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC >ss_conf 92000011004899999999996311048876889999999510882222999999999987301689843787330029 >Consensus xaxxxxxxxxxxxllxxirdfixxxxxxxGxatTxxIlxxFxxxixxxxxxxFKxlLkxvcxxxkxxxgxgxWxLKxeyx >c6a6iG_ EASALLPTTEHDDLLVEMRNFIAFQAHTDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKLKPEYC >UniRef50_UPI000180BA39(1085-1152:1155) PREDICTED: similar to DNA excision repair protein ERCC-6 (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) n=1 Tax=Ciona intestinalis RepID=UPI000180BA39 E=0.0003 s/c=0.68 id=26% cov=85% -------ASADDKMLQQLVDYLKDH---QGSATTDEIMLEFKGQVSDDKAPRFKSMLHHVCDVTRGA-GFTTWSLKQD-- >UniRef50_C5L6D4(926-1001:1009) Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5L6D4_9ALVE E=3e-17 s/c=1.18 id=27% cov=96% -AKSSVSSTIESRIMDHLVRFLS--SRSYYASSTSELLDAMDRYVPATHRKLFRHILQEMCCFQRSDRGQGIWSLREEY- >UniRef50_B6KC80(1479-1551:1555) DNA excision repair protein, putative n=2 Tax=Toxoplasma gondii RepID=B6KC80_TOXGO E=4e-14 s/c=1.08 id=30% cov=89% ---------EEKKLAEEILHFFLSRPESDFAVTTGELLEAFAPRIPTFRRKVFRAMLKELCEMvksHDAAHQPSYWILKPEF- >UniRef50_Q01DX3(1052-1131:1134) Cockayne syndrome group B (ISS) (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q01DX3_OSTTA E=4e-15 s/c=1.03 id=32% cov=95% ESSELDETQAND----MMRDIILLLKSRGGRASTSFVIDAFQDRVQSHQHALFRKLLKLAADLERSPtssreGSTSSWVLKQEF- >UniRef50_Q7F2E4(1126-1186:1187) Os01g0102800 protein n=24 Tax=Embryophyta RepID=Q7F2E4_ORYSJ E=2e-14 s/c=1.31 id=29% cov=78% -----------------IRQLCTFIQQHGGSASSTSITEHFKNRILSKDMLLFKNLLKEIATLQRGANG-ATWVLKPDY- >UniRef50_B6H3P0(1042-1107:1116) Pc13g07020 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H3P0_PENCW E=2e-13 s/c=1.16 id=31% cov=81% ------------DFMPLIRDFLASQR---GPTLSQAIVHHFNHYCSNPQRVAeFQESLKKVATLEHGRDRRGRWTLKPEF- >UniRef50_Q54TY2(1581-1652:1655) SNF2-related domain-containing protein n=5 Tax=Eukaryota RepID=Q54TY2_DICDI E=4e-13 s/c=1.05 id=25% cov=91% -AKTLFGGLNSSEIIESIFNFIM---EKGGSVTTQSIINNFQLTITEEQAPLFKVLLKSVSEFSKVSKR---WVVKSEF- >UniRef50_B6A925(1004-1084:1085) SNF2 family N-terminal domain-containing protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6A925_9CRYT E=4e-08 s/c=0.73 id=28% cov=59% ------------------------------KTTTENVLDAFGSIISENVQYKFKNILRSICHCQKSRNplkEPSIWILK---- >UniRef50_B7FQ06(651-711:711) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQ06_PHATR E=4e-05 s/c=0.81 id=31% cov=74% -------SQEYAKLLAKIKDYV-----YRYRPTTDDLLKEFES-VSNTDVAIFRRLLKSVANVD-----SGRWLLK---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 431 * * * * * * * * * 1952 * * * * * * 1 0 * * * * * * 2313 0 0 A 2 593 * * * * * * * * * * * * * 2643 2501 * * * * 2 0 * * * * * * 3038 0 0 S 3 * * * * * * * * 1469 * * * * * * 647 * * * * 3 0 * * * * * * 3038 0 0 A 4 2760 * 2697 2501 * * * * * * * * * * * 2411 2529 2643 * * 4 0 * * * * * * 3038 0 0 L 5 * * * * * * * * * 1007 * * * * * 1522 * 2697 * * 5 0 * * * * * * 3038 0 0 L 6 * * 2501 * 2529 * * * 2697 2760 * * * * * * 2643 2411 * * 6 0 * * * * * * 3038 0 0 P 7 2643 * * 2501 * 2529 * * 2697 * * * 2760 * * 2411 * * * * 7 0 * * * * * * 3038 0 0 T 8 2991 * * 3181 * 2077 * * * * * * * * * 1640 2278 * * * 8 0 * * * * * * 3446 0 0 T 9 * * 3181 * * * * * * 2939 * * * 2135 * 2991 1301 * * * 9 0 * * * * * * 3446 0 0 E 10 2294 * * 1020 * * * 3179 3528 * * 3238 * * * * * * * * 10 0 * * * * * * 3649 0 0 H 11 * * 3267 2193 * * 2211 * * * * 2433 * * * 3238 * * * 2553 11 0 * * * * * * 3649 0 0 D 12 3812 * 1238 3642 * * * * 3466 * * 3594 * * * 1991 * * * * 12 123 * 3608 * * * * 3851 0 0 D 13 4361 * 2078 2847 * 3843 * * 1244 * * * * * 3582 * * * * * 13 0 * * * * * 0 4032 0 1000 L 14 * * * * 2553 * * 1903 * 1427 2915 * * * * * * 4116 * * 14 0 * * * * * 0 4193 0 1000 L 15 3003 * * * * * * 3893 * 714 2334 * * * * * * * * * 15 0 * * * * * 0 4193 0 1000 V 16 3235 * 2862 2380 * * * * 2576 3998 * 4018 3925 3820 * 4235 * 3602 * * 16 0 * * * * 0 * 4193 0 1000 E 17 * * 2027 2194 * * 3831 * 4309 3988 2622 * * 3902 * 3023 * * * * 17 0 * * * * * * 4298 0 0 M 18 * * * * * * * 751 * 2667 2010 * * * * * * * * * 18 0 * * * * * * 4485 0 0 R 19 * 4520 * * 4347 * * * 4632 4094 * * * 4450 895 * * 2153 * * 19 59 * 4648 * * * * 4485 0 0 N 20 * * 1177 3510 * * 4099 * 4790 * 4388 2808 * 4747 3317 * 4398 * * * 20 0 * * * * * 0 4501 0 1000 F 21 * * * * 909 * * 2896 * 3462 * 4538 * * * * * * * 2326 21 0 * * * * * 0 4501 0 1000 I 22 * 3768 * * 4099 * * 1119 * 2037 3707 * 4388 * * * * 4657 * * 22 96 * 3951 * * 0 * 4501 0 1000 A 23 2403 * * * * 4563 * 4956 4240 1791 3698 * 4600 * 4516 3407 3392 4546 * * 23 319 * 2336 * * * 0 4450 0 1678 F 24 3180 * 3082 * 1496 4053 * * * 4077 * 4169 * * * 2518 * * * 3889 24 0 * * * * * 0 4149 0 3049 Q 25 * * * * 3056 4390 2663 2460 4053 4077 4279 * * 2344 3005 * * * * * 25 275 * 2526 * * 866 1148 4149 0 3049 A 26 3055 * * * 4184 * * * 2196 * * * 2571 2744 3143 2991 * 4325 * * 26 165 * 3212 * * 1590 583 4307 0 2709 H 27 * * * 1878 * * 4691 * * * * 3072 * 2453 1625 3979 * * * * 27 0 * * * * 2670 247 4319 0 2618 T 28 * * * * * * 2252 * 2773 * 4927 4273 * 4188 3234 2901 3495 3009 * 4286 28 78 * 4247 * * 282 2496 4359 0 2479 D 29 * * 3007 4815 * 1107 * * 4572 * * 4433 4535 4228 3565 4396 * * * 4083 29 0 * * * * 1022 978 4503 0 1621 G 30 * * * * 4129 469 * * * * * 3651 * 4512 * * * * * 3369 30 0 * * * * 0 * 4539 0 1000 Q 31 2950 * * * * * * * 2657 * * * 4620 2047 3206 1823 * 4704 * * 31 0 * * * * * * 4772 0 0 A 32 1167 * * * * * * * * * * * 4975 * * 4278 2808 1607 * * 32 0 * * * * * * 4772 0 0 S 33 * * * * * * * * * 3699 * 3858 3484 * 5145 1837 1437 4664 * 4387 33 0 * * * * * * 4772 0 0 T 34 * * * * * * * * * * * * * * * 2094 385 * * * 34 0 * * * * * * 4772 0 0 R 35 * * 1511 4625 * 3682 * * 3763 * * * * 2079 3850 3402 4148 * * * 35 0 * * * * * * 4772 0 0 E 36 3264 * 3936 1412 4538 * * * * 3023 4387 3862 * 4613 * 3364 4868 * * * 36 0 * * * * * * 4772 0 0 I 37 * * * * * * * 1043 * 1413 * * * * * * * 2847 * * 37 0 * * * * * * 4626 0 0 L 38 * * * * * * * 2354 * 1429 4410 * * * 4951 * 3981 1784 * * 38 0 * * * * * * 4626 0 0 Q 39 * * 1543 3309 * * 4534 * 2776 4410 * 2866 * 3208 * 4701 4800 * * * 39 0 * * * * * * 4626 0 0 E 40 1756 * * 3281 4800 * 1498 * 4009 * * 4545 * 4802 * 3829 * * * * 40 0 * * * * * * 4626 0 0 F 41 * * * * 75 * * * * * 4301 * * * * * * * * * 41 47 * 4951 * * * * 4626 0 0 E 42 3750 * 3720 3587 * 3044 * * 2203 * * 2326 * 2650 3849 * * * * * 42 0 * * * * 0 * 4604 0 1000 S 43 * * 3458 4701 * 4410 2988 * * 4545 * 2931 4606 3247 2736 2139 * * * * 43 124 4286 5001 0 * * * 4626 1000 0 K 44 4912 * * * 4168 * 4949 4385 2251 4618 * * * 4316 2311 * 3710 * * 1989 44 0 * * * * 0 * 4599 0 1000 L 45 * 2214 * * 4286 * * 1492 * 3173 * * * * * * * 2113 * 4802 45 0 * * * * * * 4626 0 0 S 46 * * 3940 5003 * * * * * 5187 * * 2215 4710 3870 1574 2196 * * * 46 159 3777 4984 0 * * * 4626 1322 0 A 47 3139 * 3498 2798 * 4881 * * 3869 * * 3112 3918 * * 2768 2594 4120 * * 47 0 * * * * * 0 4606 0 1000 S 48 4108 * 2673 2743 4524 5268 4588 * 3478 * * 4383 3015 * 4558 3358 3017 * * * 48 0 * * * * 0 * 4606 0 1000 Q 49 * * 1709 * * * 3726 * 4410 * * 3844 * 1462 3442 * * 4418 * * 49 32 5526 * 0 * * * 4626 1000 0 S 50 2642 * * * * * 3705 * 4984 5184 3170 3782 * 4418 2447 2798 3594 3976 * * 50 72 4369 * 0 * * * 4626 1176 0 C 51 2062 4358 * 4608 4970 3836 * 4951 2805 5187 * * 2245 * * * 5094 3661 * 4418 51 0 * * * * * * 4626 0 0 V 52 3160 * 4970 3170 * * * 3897 4418 1513 4048 * * * 4410 * 4286 3477 * 4951 52 109 3787 * 0 * * * 4626 1484 0 F 53 * * * * 76 * * 4286 * * * * * * * * * * * * 53 0 * * * * * * 4626 0 0 R 54 * * * * * * * * 794 * * * * 4534 1396 * * * * * 54 0 * * * * * * 4626 0 0 E 55 3277 * * 1639 * * 3787 4608 3705 * * 3297 * 4949 3993 2776 * 4545 * * 55 0 * * * * * * 4626 0 0 L 56 3777 * * * * * * 2575 * 1224 2259 * * * * 4534 4425 4949 * * 56 0 * * * * * * 4626 0 0 L 57 * * * * * * * * * 0 * * * * * * * * * * 57 0 * * * * * * 4626 0 0 R 58 * * * * * 4608 3663 * 1192 * * 3141 * 3590 2408 4802 5526 * * * 58 0 * * * * * * 4626 0 0 N 59 * * * 1908 * * 4410 * 2324 4710 * 4358 * 2561 4970 3049 3687 * * * 59 0 * * * * * * 4626 0 0 L 60 3841 * * * * * * 1728 * 3038 3514 * * * * * * 1255 * * 60 0 * * * * * * 4626 0 0 C 61 1230 1063 * * * * * * * * * * * * * 3394 * * * * 61 0 * * * * * * 4613 0 0 T 62 * 4221 3530 3168 * 4939 4395 3876 * * * 3595 * 4564 3929 * 1889 2841 * * 62 0 * * * * * * 4613 0 0 F 63 * 4395 * * 1323 * * * * 1359 3573 * * * * * * 3664 * * 63 62 4582 * 1585 585 * * 4613 1000 0 H 64 * * 3491 1840 * * 2754 * * * * 2974 * 2633 3826 3701 4395 * * * 64 110 4564 4994 0 * * * 4613 1000 0 R 65 * * 4561 * * * 4460 * 952 * * * * * 1490 4679 * * * * 65 78 * 4250 * * * 0 4587 0 1000 T 66 4505 4631 4984 * * 1748 * * * * 4614 4876 * * 4864 1709 3039 4335 * * 66 0 * * * * * 0 4526 0 1517 S 67 2335 * 4127 * * 2996 * * 4715 4668 * 4539 2831 4867 3349 2832 3548 * * * 67 300 3346 3479 1627 565 * 0 4526 1658 1517 G 68 4730 * 3408 * * 2798 3418 * 2920 * * 1529 * * 4026 3462 * * * * 68 296 3249 3638 1585 585 337 2263 4388 1543 2277 G 69 * * * 4300 * 1060 * * 3054 * 4515 * * 4543 2434 4560 4836 * * * 69 286 3900 3144 0 * 1701 530 4514 1459 1918 E 70 * * * 2100 4235 * * * * * * * 2755 4048 2134 3689 2324 * * * 70 0 * * * * 1294 756 4634 0 2638 G 71 3138 * * * * 845 * * 4070 * * 4515 * * * 2525 4252 * * * 71 47 * 4978 * * 579 1598 4508 0 2001 I 72 * * * 4797 4918 * * 1658 4093 4854 * 4697 * 4882 3184 4575 2963 3593 * 3550 72 0 * * * * 0 * 4571 0 1486 W 73 * * * * * * * * * * * * * * * * * * 0 * 73 0 * * * * * * 4613 0 0 K 74 5360 4792 * 5261 * * * 3485 3603 4994 * * * * 4994 2802 2817 1547 * 4274 74 0 * * * * * * 4613 0 0 L 75 * * * * * * * * * 64 * * * * * * * 4526 * * 75 0 * * * * * * 4613 0 0 K 76 * * * * * * * * 487 * 4274 * * * 2091 * * * * * 76 0 * * * * * * 4613 0 0 P 77 3500 * 2971 4032 * * * * 4027 * * * 1267 2818 * 3260 * * * * 77 0 * * * * * * 4480 0 0 E 78 * * 2597 641 * * 4548 * 4443 * * * * 4468 4067 * * * * * 78 0 * * * * * * 4480 0 0 Y 79 * * * * 1132 * * * * * * * * * * * * * * 879 79 0 * * * * * * 4373 0 0 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * 0 * * * 1110 0 0 //