HHsearch 1.5 NAME c5zuvB_ FAM FILE c5zuvB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5zuvB_.a3m DATE Sat Apr 13 08:17:59 2019 LENG 129 match states, 129 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.3973 -2.0311 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCSCCCCCCCCC CCCCHHHHHHHHHHHHHHHTTCCCHHHHC >sa_dssp EEEEEEEDDDEEEDCEEDCEEDCDDBEDBCEDADDDDEDCDDDDEDCDDDCEEBEEDDEDBDDDDEEDEEECEDDDDECEEEEDEEDBDEECEDEEDECE DDECEEDCDDCECDBEDCDEDDCDCEEDE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHCCHHHCC >ss_conf 9038999999999999999998677788899998988999999999999984399999999999853677899999999999998644002648999999 99999999999999999987310377519 >Consensus qeNQkilAxsFNxAixnIxxafxxvnxaxxqtsxxxxtvaxALxKiQdVVNxqxxaLxxLtxQLxxNFxAISsSixdIyxRLDxleAdaQtGRLxaLnax Vaqxxlaxxkxxxaxxkxxexyinxxxxx >c5zuvB_ QENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQSGGRGGSLDQINVT FLDLEYEMKKLEEAIKKLEESYIDLKELG >UniRef50_B3FHU5(809-936:1226) Spike n=17 Tax=Coronavirinae RepID=B3FHU5_CVTKE E=2e-13 s/c=0.60 id=38% cov=93% -DNQNLIANSFNKALKGIQSALDTVSQGFVEVARGFESVTVALNKVQDVVNTHSDILNKLMAQLSVNFGAVSSSLNEIYLKLDQINADAQvdrliTGRLT ALSTYVASLQLAAYKADQsrrlALQKVEE--------- >UniRef50_Q91AV1(990-1117:1383) Spike glycoprotein n=50 Tax=Alphacoronavirus RepID=SPIKE_PEDV7 E=4e-24 s/c=0.88 id=47% cov=96% QRNQQLLAESFNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQAISSSIDDIYSRLDILSADVQvdrliTGRLS ALNAFVAQ-TLTKYTEVQASRKLAQQKVN----- >UniRef50_B1PHI8(990-1127:1385) Spike protein n=2 Tax=Coronavirus group 1b RepID=B1PHI8_9ALPC E=7e-22 s/c=0.75 id=46% cov=95% QRNQKILAQSFNAAMGNITVAFSGVSNAIQQTVSSLTTISRALNKVENAVNEQGTALSQLTKQLASNFQAVSSSIEDLYNRLDRLEADQQvdrliTGRLA ALNAFVtqqllrysevrASRQLAQEKINECVKSQSSRY------- >UniRef50_A4ULL0(965-1093:1328) Spike protein (Fragment) n=1 Tax=Bat coronavirus Fujian/773/2005 RepID=A4ULL0_9ALPC E=7e-22 s/c=0.81 id=48% cov=94% QQNQKILADSFNKAIEQITLGFSQVNDALQQTSMALSTVAEAISKIENVVNTQGLALSQLTQQLTANFDAISNSIEDIYNRLDILAADAQvdrliTGRLA ALNSFVAQtlVKYAEVRSMRslAMQKINE--------- >UniRef50_P05135(792-905:1163) Spike protein S2 n=1237 Tax=Avian coronavirus RepID=SPIKE_IBV6 E=3e-16 s/c=0.75 id=38% cov=81% --NQEKIAASFNKAIGHMQ--------------EGFRSTSLALQQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQvdriiTGRLS SLSVLASAKQAEYYRVSQqrelATQKINE--------- >UniRef50_A3EXG6(915-1028:1274) Spike protein S2 n=4 Tax=Rousettus bat coronavirus HKU9 RepID=SPIKE_BCHK9 E=5e-16 s/c=0.75 id=40% cov=82% -ENQKLIASSFNNALVNIQ-------KGFTETS-------IALSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEvdrliNGRMM VLNTYVTQLLIQASEAKAqnalAAQKISE--------- >UniRef50_Q8BB25(998-1111:1349) Spike protein S2 n=85 Tax=Betacoronavirus RepID=SPIKE_CVP67 E=1e-15 s/c=0.74 id=38% cov=82% -QNQKLIASAFNNALDAIQEGFDATNSALV--------------KIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAKAQidrliNGRLT ALNAYVsqqlSDSTLVKFSAAQAIEKVNE--------- >UniRef50_A8JP00(766-877:1128) Spike glycoprotein n=3 Tax=Rhinolophus bat coronavirus HKU2 RepID=A8JP00_9ALPC E=5e-07 s/c=0.50 id=31% cov=72% ----------------------NGFNQLTASVSKLALTTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMN VLQLFVTNYKLKIA--------------- >UniRef50_B2BW33(1072-1202:1472) Spike protein n=1 Tax=Beluga Whale coronavirus SW1 RepID=B2BW33_9GAMC E=1e-29 s/c=1.00 id=34% cov=90% QENQKIIVQQFNKAIDSMTSAFQSVNEGFS-------AVSSAITEVQNAVNAQSQALTKLLGQLNYNFGATTSSIKELYERLAKLEADVQvdrliNGRLT ALSAFVAARQveaakvasqrvLAAEKINECVKSTSNRY------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 2159 0 0 E 2 * * 3677 848 * * * * 3009 * * * * 2901 3211 * * * * * 2 0 * * * * * * 2573 0 0 N 3 * * * * * * * * * * * 0 * * * * * * * * 3 0 * * * * * * 2685 0 0 Q 4 * * * * * * * * * * * * * 0 * * * * * * 4 0 * * * * * * 2685 0 0 K 5 * * * 3812 * * * * 604 * * 3948 * 2280 * * * * * * 5 0 * * * * * * 2685 0 0 I 6 * * * * * * * 675 3812 2193 4553 * * 4608 * * * * * * 6 0 * * * * * * 2685 0 0 L 7 * * * * * * * 1162 * 854 * * * * * * * * * * 7 0 * * * * * * 2685 0 0 A 8 100 * * * * * * * * * * * * * * * * 3907 * * 8 0 * * * * * * 2685 0 0 A 9 2456 * 3688 3084 * * * * * * * 1487 * 3101 * 2749 * * * * 9 0 * * * * * * 2685 0 0 S 10 2284 * * * * * * * 4200 * * * * 3216 * 661 * * * * 10 0 * * * * * * 2685 0 0 F 11 * * * * 0 * * * * * * * * * * * * * * * 11 0 * * * * * * 2685 0 0 N 12 * * * * * * * * * * * 0 * * * * * * * * 12 0 * * * * * * 2685 0 0 K 13 4326 * * * * * * * 1210 * * 2417 * 2286 * 2995 * * * * 13 0 * * * * * * 2685 0 0 A 14 0 * * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2685 0 0 M 15 * * * * * * * 1226 * 1900 2093 * * * * * * 3833 * * 15 0 * * * * * * 2685 0 0 T 16 * * 3211 3688 * 909 * * 3948 * * 4633 * * * 4608 3821 3948 * * 16 0 * * * * * * 2685 0 0 N 17 2853 * * * * 3948 3812 * * * * 888 * 3076 * 3907 * * * * 17 0 * * * * * * 2685 0 0 I 18 * * * * * * * 308 * * 2379 * * * * * * * * * 18 0 * * * * * * 2685 0 0 V 19 * * * * * * * * * * * * * 1395 * 3833 1189 3170 * * 19 211 * 2878 * * * * 2685 0 0 D 20 4453 * 3615 2718 * * * * * 1765 * * * 4472 * 2217 3937 3307 * * 20 0 * * * * * 0 2503 0 1473 A 21 626 * * * * 1983 * * * * * * * * * 3336 * * * * 21 0 * * * * * 0 2503 0 1473 F 22 * * * * 439 * * * * 1929 * * * * * * * * * * 22 0 * * * * * 0 2503 0 1473 T 23 * * 2263 4409 * 3648 * * * * * 3316 * 3828 * 1654 2504 * * * 23 0 * * * * * 0 2694 0 1473 G 24 2992 * * * * 2176 * * 4586 * * * * 2623 * 1898 2468 * * * 24 0 * * * * * 0 2694 0 1473 V 25 * * * * 3316 * * * * * * * * * * * 2364 504 * * 25 0 * * * * * 0 2694 0 1473 N 26 * * * * * * * * 4409 * * 513 * * * 2258 4536 * * * 26 236 * 2728 * * 1000 1000 2694 0 1473 D 27 * * 1144 2960 * * * * 3798 * * 4242 * 2439 * 3920 4509 * * * 27 0 * * * * * 0 2647 0 1689 A 28 591 * * * * 2120 * * * 3240 * * * * * * * * * * 28 0 * * * * * 0 2647 0 1689 I 29 * * * * 2120 * * 1350 * 2133 * * * * * * 3240 4509 * * 29 0 * * * * * 0 2647 0 1689 T 30 3240 * * * * * 4440 * 4658 * * * * 1750 * 2559 2346 2789 * * 30 227 * 2780 * * * 0 2647 0 1689 Q 31 * * * 2422 * * * * * * * * * 630 * 3076 4363 * * * 31 0 * * * * * 0 2505 0 1893 T 32 * * * * * * * * * * * * * * * * 447 1909 * * 32 0 * * * * * 0 2505 0 1893 S 33 2719 * * * * * * * * * * * * * * 353 * 3941 * * 33 132 * 3515 * * 2148 369 2505 0 1893 Q 34 * * 4222 1416 * * * * 2501 * 3349 * * 2867 3393 3953 * * * * 34 0 * * * * * 0 2528 0 1860 A 35 1588 * * * * 1505 * * * 3088 * * * * * 3181 * 3524 * * 35 0 * * * * * 0 2528 0 1860 L 36 3088 * * * 2053 * * 2390 * 1150 * * * * * * * * * * 36 0 * * * * * 0 2528 0 1860 Q 37 4254 * * 3393 * * 4314 * 4222 2614 * 2693 * 2543 3378 3349 3953 * * * 37 0 * * * * 2083 389 2528 0 1860 T 38 3626 * * * * * * * * * * * * * * 2571 413 * * * 38 0 * * * * * 0 2594 0 1678 V 39 * * * * * * * 4185 * * 4485 * * * * * 2345 507 * * 39 0 * * * * * 0 2594 0 1678 A 40 898 * * * * * * * * * * * * * * 1588 2936 * * * 40 0 * * * * 277 2515 2594 0 1678 T 41 * * * 3750 * * 4557 2918 4658 3058 * 3945 * * 4421 1834 2857 4036 * * 41 0 * * * * * 0 2814 0 1000 A 42 58 * * * * * * * * * * * * * * * * 4658 * * 42 0 * * * * * 0 2814 0 1000 L 43 * * * * 4206 * * 2291 * 431 * * * * * * * * * * 43 0 * * * * * 0 2814 0 1000 N 44 4658 * * * * 3466 * * 4922 * * 1314 * 2661 * 2881 2828 * * * 44 0 * * * * 0 * 2814 0 1000 K 45 3465 * * 4030 * * * * 352 * * * * 3949 * * * * * * 45 0 * * * * * * 2824 0 0 I 46 * * * * * * * 815 * 4737 4076 * * * * * * 1579 * * 46 0 * * * * * * 2824 0 0 Q 47 * * * 3080 * * * * * * * * * 182 * * * * * * 47 0 * * * * * * 2824 0 0 D 48 2966 * 1075 4605 * * * * * * * 2478 * * * 3160 3946 * * * 48 0 * * * * * * 2824 0 0 V 49 2655 * * * * * * * * * * * * * * * * 249 * * 49 0 * * * * * * 2824 0 0 V 50 * * * * * * * 4076 * * * * * * * * * 88 * * 50 0 * * * * * * 2824 0 0 N 51 * * * * * * * * * * * 0 * * * * * * * * 51 0 * * * * * * 2824 0 0 Q 52 2393 * * 4446 * * * * 2964 * * * * 1497 * 3167 2558 * * * 52 0 * * * * * * 2824 0 0 Q 53 * * * * * * 3084 * * * * 1959 * 679 * * * * * * 53 0 * * * * * * 2824 0 0 G 54 1659 * * * * 1003 * * * * * * * * * 2438 * * * * 54 0 * * * * * * 2824 0 0 N 55 2739 * 4092 2811 * * * * * 3788 4275 3354 * 2515 * 2277 4446 * * * 55 0 * * * * * * 2824 0 0 S 56 593 * * * * * * 3019 * * * * * 2739 * 3974 * * * * 56 0 * * * * * * 2824 0 0 L 57 * * * * * * * * * 137 * * * * * * * 3465 * * 57 0 * * * * * * 2824 0 0 N 58 * * * 3465 * * 3369 * * * * 1400 * * * 1700 2989 * * * 58 0 * * * * * * 2824 0 0 H 59 * * * 3949 * * 1901 * 2544 * * 3688 * 2114 * 3465 3369 * * * 59 0 * * * * * * 2824 0 0 L 60 * * * * * * * * * 97 * * * * * * 3949 * * * 60 0 * * * * * * 2824 0 0 T 61 4275 * * * * * * * * 2849 3019 * * * * * 1003 2416 * * 61 0 * * * * * * 2824 0 0 S 62 2059 * * * * 4030 * * 3048 3291 * 4639 * 2796 * 2386 * 3317 * * 62 0 * * * * * * 2824 0 0 Q 63 * * * 4275 * 3465 * * * * * * * 334 * 3949 * * * * 63 0 * * * * * * 2824 0 0 L 64 * * * * * * * 3465 * 137 * * * * * * * * * * 64 0 * * * * * * 2824 0 0 R 65 3584 * * * * 4076 * * * * * 2989 * 2495 3311 1785 2618 * * * 65 0 * * * * * * 2824 0 0 Q 66 3788 * * 3465 * * 3677 * 3949 * * 1360 * 3974 * 3048 * 4092 * 4030 66 0 * * * * * * 2824 0 0 N 67 * * * * * * * * * * * 301 * * 3688 4076 4275 * * * 67 0 * * * * * * 2824 0 0 F 68 * * * * 0 * * * * * * * * * * * * * * * 68 0 * * * * * * 2824 0 0 Q 69 * * 2880 * * 997 * * * * * * * 1462 * * * * * * 69 0 * * * * * * 2824 0 0 A 70 0 * * * * * * * * * * * * * * * * * * * 70 0 * * * * * * 2824 0 0 I 71 * * * * * * * 261 * * * * * * * * 4030 3258 * * 71 0 * * * * * * 2824 0 0 S 72 * * * * * * * * * * * * * * * 91 4030 * * * 72 0 * * * * * * 2824 0 0 S 73 3119 * * * * * 3979 * * * * 3191 * * * 845 2686 * * * 73 0 * * * * * * 2824 0 0 S 74 * * * * * * * * * * * 3465 * * * 309 * 3290 * * 74 0 * * * * * * 2824 0 0 I 75 * * * * 3465 * * 576 * 2068 * * * * * * * * * * 75 0 * * * * * * 2824 0 0 Q 76 3357 * 4605 2682 * * * * 2720 * * 2686 * 1699 * 3468 * * * * 76 0 * * * * * * 2824 0 0 A 77 3311 * 950 1781 * * * * * * * * * * * * * 3465 * * 77 0 * * * * * * 2824 0 0 I 78 * * * * * * * 163 * 3223 * * * * * * * * * * 78 0 * * * * * * 2824 0 0 Y 79 * * * * 4076 * * * * 2584 * * * * * 3465 * * * 549 79 0 * * * * * * 2824 0 0 D 80 3120 * 3311 4030 * * * * * 4092 * 1768 * 2687 * 2512 4639 * * * 80 0 * * * * * * 2824 0 0 R 81 * * * * * * * * 4092 * * * * 3949 190 * * * * * 81 0 * * * * * * 2824 0 0 L 82 * * * * * * * * * 0 * * * * * * * * * * 82 0 * * * * * * 2824 0 0 D 83 4030 * 298 2993 * * * * * * * * * * * * * * * * 83 0 * * * * * * 2824 0 0 T 84 4739 * * 2582 * 3369 * 3139 2162 * * * * 4092 3539 3296 3117 * * * 84 0 * * * * * * 2824 0 0 I 85 * * * * * * * 2158 * 1047 * * * * * * * 1777 * * 85 0 * * * * * * 2824 0 0 Q 86 2563 * * 1017 * * * * * * * 4092 * 2335 * 3647 * * * * 86 0 * * * * * * 2824 0 0 S 87 177 * * * * * * * * * * * * 4275 * 3974 * * * * 87 0 * * * * * * 2824 0 0 G 88 * * 702 3488 * 3974 * * 3688 * * 2691 * * * * * * * * 88 0 * * * * * * 2824 0 0 G 89 1015 * * * * 3974 * * * * * * * 2243 * * * 2118 * * 89 0 * * * * * * 2824 0 0 R 90 * * * 4076 * * * * * * * 4736 * 252 3974 * * * * * 90 2697 242 * 2322 322 * * 2824 2635 0 G 91 * * * * * 3974 * * * * 3465 2002 * * * * 746 * * * 91 0 * * * * * * 2824 0 0 G 92 * * 3465 * * 137 * * * * * * * * * * * * * * 92 0 * * * * * * 2824 0 0 S 93 * * * * * * * * * * * * * * 105 3827 * * * * 93 0 * * * * * * 2830 0 0 L 94 * * * * * * * * * 87 4089 * * * * * * * * * 94 0 * * * * * * 2830 0 0 D 95 1501 * 3827 * * * * 3482 * * 4089 * * 4741 * 3256 1806 * * * 95 0 * * * * * * 2830 0 0 Q 96 668 * * * * * * * * * * 3482 * 4172 * 2718 * 4089 * 6060 96 0 * * * * * * 2830 0 0 I 97 * * * * * 3210 * 3820 * 284 * * * * * * * * * * 97 0 * * * * * * 2996 0 0 N 98 * * * * * * * * * * * 550 * 4985 3210 2496 * * * * 98 0 * * * * * * 2996 0 0 V 99 922 * * * * * * * * * 3210 * * * * 3844 2719 2807 * * 99 0 * * * * * * 2996 0 0 T 100 * * * * 1429 * * * * 3987 * 3210 * * * * 3647 * * 1405 100 0 * * * * * * 2996 0 0 F 101 3987 * * * 3647 * * 4757 * * * * * * * * * 286 * * 101 372 2137 * 3091 180 * * 2996 1809 0 L 102 1087 * * * * * * * * 2392 * * * * * 2526 2598 * * * 102 0 * * * * * * 3006 0 0 D 103 3019 * 2651 * * * * * * * * * * 911 * 2429 * * * * 103 319 2697 4503 2688 243 * * 3006 1661 0 L 104 * * * * * * * * 3904 1366 * * * * 1759 3683 4265 3057 * * 104 53 4791 * 3459 138 0 * 2986 1000 1000 E 105 * * * 3232 3236 * * * 4701 2288 * * * 1511 4868 5044 2958 * * * 105 87 4087 * 3459 138 * * 3006 1000 0 Y 106 3117 * 5721 * * * * 3948 * 1027 * 4080 * * * * 4598 3236 * 3267 106 0 * * * * * * 3006 0 0 E 107 1118 * * 2747 * * * 4686 * * * * * 2598 * * 2735 4796 * * 107 0 * * * * * * 3006 0 0 M 108 2099 * * 4701 * * * 4598 2661 * 2261 3236 * 2741 * * * * * 3954 108 0 * * * * * * 3006 0 0 K 109 * * 4676 2259 3740 * * * 4165 * * 5125 * 3953 4302 2598 * 4701 * 1869 109 0 * * * * * * 3006 0 0 K 110 * * * 3948 * * * * 906 * * * * 3316 2925 2994 4503 * * * 110 0 * * * * * * 3006 0 0 L 111 2004 * * 4503 * * * 1701 * 2171 * * * * * 4701 * 2853 * * 111 0 * * * * * * 3006 0 0 E 112 3740 * 4082 4165 * * * * 2237 * 4701 1678 * 3655 4080 3954 * 4503 * * 112 0 * * * * * * 3006 0 0 E 113 3237 * 6687 1369 * * * 3236 * 4302 * * * 1729 4701 * * * * * 113 486 1806 * 1903 449 * * 3006 2094 0 A 114 630 1678 * * * * * * * * * * * 4598 * * * * * * 114 0 * * * * * * 3006 0 0 I 115 3867 * * * * * * 2513 * 3913 4560 * * 2961 4531 4386 3747 1500 * * 115 0 * * * * * * 2671 0 0 K 116 * * 4135 3504 * * * * 1327 * * * * 1448 3479 * * * * * 116 0 * * * * * * 2671 0 0 K 117 * * * * * * * * 721 4483 * * * * * 1597 * 5807 * * 117 0 * * * * * * 2677 0 0 L 118 4401 * * * * * * 2004 * 2823 * * * 1888 * * 3795 2185 * * 118 0 * * * * * * 2687 0 0 E 119 4345 * * 2957 * * * * * * * 1406 * 4483 * 1322 * * * * 119 0 * * * * * * 2677 0 0 E 120 * * 3748 731 * * * * * * * 3111 * 3179 * 4245 4497 * * * 120 0 * * * * * * 2677 0 0 S 121 * * * * * * * * * * * * * 2687 1051 1466 * * * * 121 0 * * * * * * 2558 0 0 Y 122 * * * * 2894 * * * 2687 * * * * * * * * * * 494 122 0 * * * * * * 2558 0 0 I 123 * * * * * * * 644 * * * * * * * * * 1473 * * 123 0 * * * * * * 1950 0 0 D 124 * * 2126 * * * * * * * * 376 * * * * * * * * 124 0 * * * * * * 1950 0 0 L 125 * * * * * * * * * 0 * * * * * * * * * * 125 0 * * * * * * 1348 0 0 K 126 * * * * * * * * 0 * * * * * * * * * * * 126 0 * * * * * * 1348 0 0 E 127 * * 1585 585 * * * * * * * * * * * * * * * * 127 0 * * * * * * 1348 0 0 L 128 * * * * * * * 1585 * 1553 * * * * * * * 1618 * * 128 0 * * * * * * 1348 0 0 G 129 * * * * * 0 * * * * * * * * * * * * * * 129 0 * * 0 * * * 1348 0 0 //