HHsearch 1.5 NAME c5z62M_ FAM FILE c5z62M_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5z62M_.a3m DATE Sat Mar 2 08:27:17 2019 LENG 43 match states, 43 columns in multiple alignment FILT 11 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4814 2.6960 SEQ >ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCC >sa_dssp EEEEEEEEEEDEEEEDEDEEDDEDEEEEEDDEDEEDDEDDEEE >ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 9889764444278899999999999995288999735650388 >Consensus ixskPpxxxlxxxexavgltxxfvxxLxPagWVLshLexYkkx >c5z62M_ IHSLPPEGKLGIMELAVGLTSCFVTFLLPAGWILSHLETYRRP >UniRef50_UPI00003AF976(25-66:68) PREDICTED: similar to cytochrome c oxidase, subunit VIIIa n=1 Tax=Gallus gallus RepID=UPI00003AF976 E=0.0003 s/c=1.10 id=53% cov=100% IVSGPPQHPLGTAESVVGLLAMFVTCLGPAAWVLSHLEDYKK- >UniRef50_UPI0000DA3E53(22-62:73) PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver (Cytochrome c oxidase subunit 8-2) n=1 Tax=Rattus norvegicus RepID=UPI0000DA3E53 E=7e-10 s/c=1.59 id=48% cov=98% -HLKPPQEQLRVLDITIGLTSCFMRCLQSAGWVLSHLEGYEK- >UniRef50_UPI000194C676(25-65:69) PREDICTED: hypothetical protein n=1 Tax=Taeniopygia guttata RepID=UPI000194C676 E=0.0002 s/c=1.15 id=43% cov=98% LRSHPPEHILSGGEQAIALTLMFSSFLVPTAWVLSNIYNYR-- >UniRef50_Q4RZH3(24-65:67) Chromosome undetermined SCAF14926, whole genome shotgun sequence n=3 Tax=Euteleostei RepID=Q4RZH3_TETNG E=2e-09 s/c=1.51 id=44% cov=100% VTSKPARHKVTAGEQAIAMTVLFVTILAPSGWILAHLEDYKK- >UniRef50_Q7Z4L0(30-71:72) Cytochrome c oxidase subunit 8C, mitochondrial n=4 Tax=Eutheria RepID=COX8C_HUMAN E=0.0006 s/c=1.07 id=48% cov=98% -HSGPPRQrPLSAAEMAVGLVVFFTTFLTPAAYVLGNLKQFRR- >UniRef50_B5X6B0(27-68:70) Cytochrome c oxidase polypeptide VIII-heart, mitochondrial n=4 Tax=Clupeocephala RepID=B5X6B0_SALSA E=2e-08 s/c=1.43 id=30% cov=100% VFTRPAKDPLGPAETVFGLGMFALAILGPSGWVLANIENYKK- >UniRef50_Q4TC53(127-168:176) Chromosome undetermined SCAF7053, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4TC53_TETNG E=0.0007 s/c=1.07 id=40% cov=100% IYSKPPRNKIGAAQSFFVMSVFTVVMLAPAAWILHHLPEYRQ- >UniRef50_P48772(25-66:70) Cytochrome c oxidase subunit 8B, mitochondrial n=12 Tax=Amniota RepID=COX8B_MOUSE E=4e-06 s/c=1.25 id=37% cov=100% VSAKPAKTPTSAVEQAVGISAIVVGFMVPAGWVLAHLESYKK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * I 1 * * * * * * * 1103 * 2779 * * * * * * * 1363 * * 1 0 * * * * * * 2627 0 0 H 2 * * * * 3149 * 1401 * * * * * * * 3200 3146 3476 3756 * 3024 2 0 * * * * * * 2894 0 0 S 3 3146 * * * * * * * * 3068 * * * * * 610 3149 * * * 3 0 * * * * * * 2894 0 0 L 4 * * * * * 2546 3301 * 864 3774 * * * * 3255 * * * * * 4 0 * * * * * * 2898 0 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 0 * * * * * * 2898 0 0 P 6 1477 * * * * * * * * * * * 642 * * * * * * * 6 0 * * * * * * 2898 0 0 E 7 * * * 2518 * * * * 1832 * * * * 2457 1464 * * * * * 7 0 * * * * * * 2898 0 0 G 8 * * 3255 2482 * 3774 1643 * * * * 3107 * 3297 * * 3249 * * * 8 155 3297 * 0 * * * 2898 1000 0 K 9 * * * 3912 * * 3818 3301 1903 * * * 1391 3151 * * * * * * 9 0 * * * * * * 2898 0 0 L 10 * * * * * * * 2419 * 668 * * * * * * 3249 3675 * * 10 0 * * * * * * 2898 0 0 G 11 * * * * * 1218 * * * * * * * * 3151 1399 3675 * * * 11 0 * * * * * * 2898 0 0 I 12 1317 * * * * 3301 * 3774 * * * * 3255 * * * 2879 2446 * * 12 0 * * * * * * 2898 0 0 M 13 1351 * * * * 1997 * * * 3151 2841 * * * * * * 3249 * * 13 0 * * * * * * 2898 0 0 E 14 * * 2482 505 * * * * * * * * * 3107 * * * * * * 14 0 * * * * * * 2898 0 0 L 15 * * * * * * * 2482 * 3774 3297 * * 1491 * 2430 3255 * * * 15 0 * * * * * * 2898 0 0 A 16 744 * * * 3107 * * * * * * * * * * * 3151 2521 * * 16 0 * * * * * * 2898 0 0 V 17 * * * * 2179 * * 1461 * * * * * * * * * 1265 * * 17 0 * * * * * * 2898 0 0 G 18 1997 * * * * 659 * * * * * * * * * * * 3107 * * 18 0 * * * * * * 2898 0 0 L 19 * * * * * * * 3249 * 668 1915 * * * * * * * * * 19 0 * * * * * * 2898 0 0 T 20 * * * * * 3255 * * * 3847 * * * * * 2176 992 3297 * * 20 0 * * * * * * 2898 0 0 S 21 2026 * * * * * * * * 3301 3255 * * * * 1988 * 1756 * * 21 0 * * * * * * 2898 0 0 C 22 * 1988 * * 1346 * * 3249 * 3675 2548 * * * * * * * * * 22 0 * * * * * * 2898 0 0 F 23 3255 * * * 569 * * * * * * * * * * * 3107 3249 * * 23 0 * * * * * * 2898 0 0 V 24 * * * * * * * 3818 * 2546 3151 * * * * 3301 3297 1177 * * 24 0 * * * * * * 2898 0 0 T 25 3255 3912 * * * 3249 * * * * * * * * 3151 3301 1346 3107 * * 25 0 * * * * * * 2898 0 0 F 26 * 2457 * * 1159 * * 1978 * * 3107 * * * * * * * * * 26 0 * * * * * * 2898 0 0 L 27 * * * * * * * * * 160 3249 * * * * * * * * * 27 0 * * * * * * 2898 0 0 L 28 2363 * * * * 2028 * * * 2841 * * * 3151 * * 3297 2275 * * 28 0 * * * * * * 2898 0 0 P 29 * * * * * * * * * * * * 172 * * 3151 * * * * 29 0 * * * * * * 2898 0 0 A 30 790 * * * * * * * * * * * * * * 1642 3301 * * * 30 0 * * * * * * 2898 0 0 G 31 1363 * * * * 710 * * * * * * * * * * * * * * 31 0 * * * * * * 2898 0 0 W 32 * * * * * * * * * * * * * * * * * * 273 2534 32 0 * * * * * * 2898 0 0 I 33 * * * * * * * 1903 * * * * * * * * * 449 * * 33 0 * * * * * * 2898 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 2898 0 0 S 35 1477 * * * * 3297 3107 * * * * * * * * 1241 * * * * 35 0 * * * * * * 2898 0 0 H 36 * * * * * * 531 * * * * 1699 * * * * * * * * 36 0 * * * * * * 2898 0 0 L 37 * * * * * * * 2278 * 333 * * * * * * * * * * 37 0 * * * * * * 2898 0 0 E 38 * * * 555 * * * * 3297 * * * 3107 * * * * * * 3301 38 0 * * * * * * 2898 0 0 T 39 * * 2758 3107 * 3151 * * * * * 2278 * 3297 * 2044 3774 * * * 39 0 * * * * * * 2898 0 0 Y 40 * * * * 3297 * * * * * * * * * * * * * * 155 40 0 * * * * * * 2898 0 0 R 41 * * * 3151 * * * * 1014 * * * * * 1350 * * * * * 41 0 * * * * * * 2898 0 0 R 42 * * * * * * * * 685 * * * * 2816 2083 * * * * * 42 0 * * * * * * 2773 0 0 P 43 * * * * * * * * * * * * 0 * * * * * * * 43 0 * * 0 * * * 1000 0 0 //