HHsearch 1.5 NAME c5yniB_ FAM FILE c5yniB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5yniB_.a3m DATE Sat Dec 8 08:26:55 2018 LENG 120 match states, 120 columns in multiple alignment FILT 9 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.3723 -2.2695 SEQ >ss_dssp CHHHHHTTSSSCHHHHHHHHHHTTCCCCCCCCBCCCCSCSCCCSEESSCCCCTTEEEEETGGGCHHHHTTCCCCCTTCCCSSTTSEEEEEGGGTTCHHHH HHHCCBCTTTCSBTTBBCCC >sa_dssp EEBCDDADEDEDCDECACDCBEEEBEBBEECEDCECEDECDACABBEECCACEEBCABCBDBAAACCCBECECECEEEEBECEEDCAAABDECCEBBABB BBDCECBEECDCAEEDDCEE >ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCEEE EEECCCCCEEHHHHCCCCCC >ss_conf 9302031014785799999997259834235755317778724788257898642235760589988522578986404021536998044344583245 77267120000212388779 >Consensus ssiLslcaFsvDPxxxYldxvxxGgxPxxnCVKMltxxxGxGxAiTxkpexxxxQdSyGGASvClYCRahieHPxvdGxCkxkGkFVQipxxxxkDPvxF clxnxvCxvCxxWxxxgCxC >c5yniB_ SSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPESTADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGF CLSNTPCNVCQYWIGYGCNC >UniRef50_P0C6V1(4334-4452:4474) Non-structural protein 11 n=374 Tax=root RepID=R1A_CVMJH E=9e-37 s/c=1.29 id=55% cov=100% SAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPEATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLG-IKDPVSY VLTHDVCQVCGFWRDGSCSC >UniRef50_P0C6F6(3987-4105:4128) Non-structural protein 11 n=99 Tax=root RepID=R1A_BC512 E=3e-31 s/c=1.14 id=54% cov=100% SSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVEASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRF VLENTVCKVCGCWQANGCTC >UniRef50_P0C6T6(4105-4224:4248) Non-structural protein 11 n=5 Tax=Rousettus bat coronavirus HKU9 RepID=R1A_BCHK9 E=1e-55 s/c=1.81 id=64% cov=101% SSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPDANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGF CIRNVVCAVCNMWQGYGCPC >UniRef50_P0C6V2(3874-3992:4017) Non-structural protein 11 n=157 Tax=root RepID=R1A_CVPPU E=4e-53 s/c=1.75 id=52% cov=100% SSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGT-QDPIRF CIENEVCVVCGCWLNNGCMC >UniRef50_B6VDY6(3539-3655:6307) Orf1ab polyprotein n=4 Tax=Avian coronavirus RepID=B6VDY6_9GAMC E=2e-47 s/c=1.62 id=49% cov=98% ASLLTYLAFAVDPKAAYLKHLADGGKPIQGCVQMVA-AMGPGFAVTIKPQPSEHQNSYGGASICLYCRAHIPHPGVDGRCPYKGRFVQIDKD--KEPVSF ALTHEPCSSCQRWVAYDCTC >UniRef50_P0C6T5(4239-4481:4481) Non-structural protein 11 n=12 Tax=Betacoronavirus RepID=R1A_BCHK5 E=1e-136 s/c=0.61 id=85% cov=100% SSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPEANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLH-IRDPVGF CLQNTPCNVCQFWIGHGCNC >UniRef50_P0C6V5(3695-3950:3953) Non-structural protein 11 n=486 Tax=root RepID=R1A_IBVM E=3e-97 s/c=0.84 id=61% cov=100% VGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSPTPDQDSYGGASVCLYCRAHIAHPGgagnLDGRCQFKGSFVQIPT-TEKD PVGFCLRNKVCTVCQCWIGYGCQC >UniRef50_B2BW31(3669-3896:6663) ORF 1ab polyprotein n=2 Tax=Beluga Whale coronavirus SW1 RepID=B2BW31_9GAMC E=1e-95 s/c=0.90 id=61% cov=100% CGILSLCSFALDAKECYLEYIKEGGAPLSNCVKMLTLHTGSGAAVTVKPAPTPEQDSFGGASVCLYCRAHISHPGVYGVCQFKGKFVQIPVE-EKDPVGF CLRNKICTVCQMWIGFGCQC # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2766 3158 * * * * * * * * * * * * * 642 * 3318 * * 1 0 * * * * * * 2061 0 0 S 2 3119 * * * * 2236 * * * * * * * * * 572 * * * * 2 0 * * * * * * 2061 0 0 V 3 * * * * * * * 1195 * 1439 * * * * * * * 2362 * * 3 0 * * * * * * 2061 0 0 L 4 * * * * * * * * * 0 * * * * * * * * * * 4 0 * * * * * * 2061 0 0 S 5 * * * * * * * * * * * * * * * 664 1439 * * * 5 0 * * * * * * 2061 0 0 L 6 3393 * * * * * * * * 400 * * * * * * * * * 2766 6 0 * * * * * * 2061 0 0 V 7 * 603 * * * * * * * 2766 * * * * * * * 2362 * * 7 0 * * * * * * 2061 0 0 N 8 1048 * * * * * * * * * * 3333 * * * 1636 3393 * * * 8 0 * * * * * * 2061 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 2061 0 0 T 10 1099 * * * * * * * * * * * * * * 1205 3333 * * * 10 0 * * * * * * 2061 0 0 V 11 * * * * * * * * * 3158 * * 3132 * * * * 370 * * 11 0 * * * * * * 2061 0 0 D 12 * * 0 * * * * * * * * * * * * * * * * * 12 0 * * * * * * 2061 0 0 P 13 3158 * * * * * * * * * * * 171 * * * * * * * 13 0 * * * * * * 2061 0 0 Q 14 2222 * * 3192 * 3393 * * 1418 * * * 3215 3333 * * * * * * 14 0 * * * * * * 2061 0 0 K 15 1964 * 3318 3158 * * * * 912 * * * * * * * * * * * 15 0 * * * * * * 2061 0 0 A 16 1134 3158 * * * * * * * * * * * * * * 1209 * * * 16 0 * * * * * * 2061 0 0 Y 17 * * * * * * * * * * * * * * * * * * * 0 17 0 * * * * * * 2061 0 0 L 18 * 3318 * * * * * * 3192 564 * * * * * * * 3132 * * 18 0 * * * * * * 2061 0 0 D 19 * * 642 3158 * * * * 2016 * * * * * * * * * * * 19 0 * * * * * * 2061 0 0 F 20 2173 * * * 2362 * 2766 * * * * * * * * * * * * 1195 20 0 * * * * * * 2061 0 0 V 21 * * * * * * * 2139 * 1964 * * * * * * * 953 * * 21 0 * * * * * * 2061 0 0 N 22 2016 * 3192 * * * * * 1583 * * 2362 * 3119 * * * * * * 22 0 * * * * * * 2061 0 0 A 23 1762 * 2766 3158 * * * * * * * 3192 * 3119 3132 3215 * * * * 23 0 * * * * * * 2061 0 0 G 24 * * * * * 0 * * * * * * * * * * * * * * 24 0 * * * * * * 2061 0 0 G 25 * * * * * 561 3215 * * * 3132 3318 * * * * * * * * 25 0 * * * * * * 2061 0 0 A 26 1706 * * * * * * * 2766 * * * * 2222 3215 3192 * 3119 * * 26 0 * * * * * * 2061 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 2061 0 0 L 28 * * * * * * * 1964 * 1298 * * * * * * * 1570 * * 28 0 * * * * * * 2061 0 0 T 29 * * * * * 1656 * * * * * 3132 * 2766 * 3158 1692 * * * 29 0 * * * * * * 2061 0 0 N 30 * * * * * 2766 * * * * * 229 * * * * * * * * 30 0 * * * * * * 2061 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 2061 0 0 V 32 * * * * * * * * * * * * * * * * * 0 * * 32 0 * * * * * * 2061 0 0 K 33 * * * * * * * * 229 * * * * 2766 * * * * * * 33 0 * * * * * * 2061 0 0 M 34 * * * * * * * * * * 0 * * * * * * * * * 34 0 * * * * * * 2061 0 0 L 35 * * * * * * * * * 229 * * * * * * * 2766 * * 35 0 * * * * * * 2061 0 0 T 36 1973 3119 * * * * * * * * * * * * * 3132 954 * * * 36 229 * 2766 * * * * 2061 0 0 P 37 * * 2884 * * * * * * 2950 * 1952 1494 * * * * 3040 * * 37 0 * * * * 0 * 1913 0 1000 K 38 2766 * * * * 2173 1195 * 2362 * * * * * * * * * * * 38 0 * * * * * * 2061 0 0 T 39 2126 * * * * * * * * * 2766 3318 * * * 3215 1266 * * * 39 0 * * * * * * 2061 0 0 G 40 * * * * * 0 * * * * * * * * * * * * * * 40 0 * * * * * * 2061 0 0 T 41 * * * * * * * * * * * 2173 2766 * * 2236 1255 * * * 41 0 * * * * * * 2061 0 0 G 42 * * * * * 0 * * * * * * * * * * * * * * 42 0 * * * * * * 2061 0 0 I 43 3158 * * * 2016 * * 2362 * 3192 2126 * * 3215 * * * * * * 43 0 * * * * * * 2061 0 0 A 44 0 * * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 2061 0 0 I 45 * * * * * * * 911 * * * * * * * * * 1094 * * 45 0 * * * * * * 2061 0 0 S 46 * * * * * * * * * * * * * * * 2362 312 * * * 46 0 * * * * * * 2061 0 0 V 47 3192 * * * * * * 1932 * * * 2173 * * * 3318 * 1706 * * 47 0 * * * * * * 2061 0 0 K 48 * * * * * 2173 * * 362 * * * * * * * * * * * 48 0 * * * * * * 2061 0 0 P 49 * * * * * * * * * * * * 362 * * * * 2173 * * 49 0 * * * * * * 2061 0 0 E 50 3158 * 3192 912 * * * * * * * * * 2766 * 3318 * * * * 50 0 * * * * * * 2061 0 0 S 51 885 * * * * * * * * * * * 1477 * * 3333 * * * * 51 0 * * * * * * 2061 0 0 T 52 * * * * * * * * * * * 1650 * * * 1973 1229 * * * 52 0 * * * * * * 2061 0 0 A 53 2362 * * 2766 * * * 3192 * * * * 2236 * * * 1570 * * * 53 0 * * * * * * 2061 0 0 D 54 * * 1307 3158 * * 2766 * * * * 2166 * 3132 * * * * * * 54 0 * * * * * * 2061 0 0 Q 55 * * * * * * * * * * * * * 0 * * * * * * 55 0 * * * * * * 2061 0 0 E 56 * * 634 2261 * * * * * * * 2766 * * * * * * * * 56 0 * * * * * * 2061 0 0 T 57 * * * * * * * * * * * * * * * 312 2362 * * * 57 0 * * * * * * 2061 0 0 Y 58 * * * * 2175 * * * * * * * * * * * * * * 361 58 0 * * * * * * 2061 0 0 G 59 * * * * * 0 * * * * * * * * * * * * * * 59 0 * * * * * * 2061 0 0 G 60 * * * * * 0 * * * * * * * * * * * * * * 60 0 * * * * * * 2061 0 0 A 61 0 * * * * * * * * * * * * * * * * * * * 61 0 * * * * * * 2061 0 0 S 62 * * * * * * * * * * * * * * * 0 * * * * 62 0 * * * * * * 2061 0 0 V 63 * 3192 * * * * * 2766 * * * * * * * * * 427 * * 63 0 * * * * * * 2061 0 0 C 64 * 0 * * * * * * * * * * * * * * * * * * 64 0 * * * * * * 2061 0 0 L 65 * * * * * * * 2126 * 375 * * * * * * * * * * 65 0 * * * * * * 2061 0 0 Y 66 * * * * * * * * * * * * * * * * * * * 0 66 0 * * * * * * 2061 0 0 C 67 * 0 * * * * * * * * * * * * * * * * * * 67 0 * * * * * * 2061 0 0 R 68 * * * * * * * * * * * * * * 0 * * * * * 68 0 * * * * * * 2061 0 0 A 69 596 2162 * * * * * * * * * * * * * 3119 * * * * 69 0 * * * * * * 2061 0 0 H 70 * * * * * * 176 * * * * * * * 3119 * * * * * 70 0 * * * * * * 2061 0 0 I 71 * * * * * * * 593 * * * * * * * * * 1570 * * 71 0 * * * * * * 2061 0 0 E 72 3318 * * 642 * * * * * * * * 2766 * * 3158 * * * * 72 0 * * * * * * 2061 0 0 H 73 * * * * * * 0 * * * * * * * * * * * * * 73 0 * * * * * * 2061 0 0 P 74 * * * * * * * * * * * * 0 * * * * * * * 74 0 * * * * * * 2061 0 0 D 75 3132 * 1261 * * 1093 * * * * * * * * * * * * * * 75 152 3318 * 2000 415 * * 2061 1000 0 V 76 3192 * * * * * * 3132 * 3318 3215 * * * * * * 815 * * 76 0 * * * * * * 2061 0 0 S 77 * * 776 * * * * * * * * * * * * 2261 3393 * * 3158 77 0 * * * * * * 2061 0 0 G 78 * * * * * 0 * * * * * * * * * * * * * * 78 0 * * * * * * 2061 0 0 V 79 * * * * 3215 * * * * 2126 * * * * 2016 * * 1266 * * 79 0 * * * * * * 2061 0 0 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * * * * * 2061 0 0 K 81 * * * * * * * * 925 * * * 2766 2236 3132 * * * * * 81 0 * * * * * * 2061 0 0 Y 82 * * * * 1701 * * * * 2166 * * * * * * * * * 1090 82 0 * * * * * * 2061 0 0 K 83 * * * * * * * * 364 * * * * * 2166 * * * * * 83 0 * * * * * * 2061 0 0 G 84 * * * * * 0 * * * * * * * * * * * * * * 84 0 * * * * * * 2061 0 0 K 85 * * * * * * * * 410 * * * * * 2766 3318 * * * * 85 0 * * * * * * 2061 0 0 F 86 * * * * 164 * * * * * * * * * * * * * * 3215 86 0 * * * * * * 2061 0 0 V 87 * * * * * * * * * * * * * * * * * 0 * * 87 0 * * * * * * 2061 0 0 Q 88 * * * * * * * * * * * * * 0 * * * * * * 88 0 * * * * * * 2061 0 0 I 89 * * * * * * * 552 * * * * * * * * * 1653 * * 89 0 * * * * * * 2061 0 0 P 90 * * 2766 * * * * * * * * * 229 * * * * * * * 90 0 * * * * * * 2061 0 0 A 91 3333 * * * * * * * 2766 1226 * * * * * * 2222 3158 * * 91 152 * 3318 * * * * 2061 0 0 Q 92 * * 2621 2904 * 1439 3257 * * * * * * 3199 * * * 3040 * * 92 1074 * 930 * * 0 * 2043 0 1000 C 93 * 2288 * * * 2338 * * * * * * * * * * 743 * * * 93 319 * 2335 * * 456 1884 1753 0 1787 V 94 * * * 1825 * * * 1833 * 2625 * * * * * * * 1862 * * 94 255 * 2625 * * 0 * 1850 0 1460 R 95 * * * * * * * * 929 * * 3050 * 2829 2229 * * * * * 95 0 * * * * 0 * 2031 0 1000 D 96 * * 229 2766 * * * * * * * * * * * * * * * * 96 0 * * * * * * 2061 0 0 P 97 * * * * * * * * * * * * 0 * * * * * * * 97 0 * * * * * * 2061 0 0 V 98 * * * * * * * 1594 * * * * * * * * * 580 * * 98 0 * * * * * * 2061 0 0 G 99 * * * * * 954 * * * * * * * * 2173 1932 * * * * 99 0 * * * * * * 2061 0 0 F 100 * * * * 176 * * * * * * * * * * * * * * 3119 100 0 * * * * * * 2061 0 0 C 101 2766 666 * * * * * * * * * * * * * * * 2166 * * 101 0 * * * * * * 2061 0 0 L 102 * * * * * * * 2162 * 365 * * * * * * * * * * 102 0 * * * * * * 2061 0 0 S 103 * * * 2173 * * * * * * * * * 3393 1636 3333 1932 * * * 103 0 * * * * * * 2061 0 0 N 104 * * * * * * 1932 * * * * 438 * * * * * * * * 104 0 * * * * * * 2061 0 0 T 105 * * 3119 1938 * * * * 2236 * * * * * * * 1727 3192 * * 105 0 * * * * * * 2061 0 0 P 106 * * * * * * * 3158 * * * * 1550 * * * * 872 * * 106 0 * * * * * * 2061 0 0 C 107 * 0 * * * * * * * * * * * * * * * * * * 107 0 * * * * * * 2061 0 0 N 108 3192 * * * * * * * 3215 * * 2362 * 3119 * 2766 2236 3132 * * 108 0 * * * * * * 2061 0 0 V 109 * * * * * * * * * * * * * * * 2766 * 229 * * 109 0 * * * * * * 2061 0 0 C 110 * 0 * * * * * * * * * * * * * * * * * * 110 0 * * * * * * 2061 0 0 Q 111 * * * * * 1570 * * * * * 3192 * 853 * * * * * * 111 0 * * * * * * 2061 0 0 Y 112 * 1635 * * 2250 * * * * * 2175 * * * 2766 * * * * 3333 112 0 * * * * * * 2061 0 0 W 113 * * * * * * * * * * * * * * * * * * 0 * 113 0 * * * * * * 2061 0 0 I 114 * * * * * * * 1298 * 3132 * * * 2204 3119 * * 2766 * * 114 0 * * * * * * 2061 0 0 G 115 1973 * 3119 * * 954 * * * * * 3132 * * * * * * * * 115 0 * * * * * * 2061 0 0 Y 116 * * * * 3158 3119 3393 * * * * 2173 * * * * * * * 1133 116 0 * * * * * * 2061 0 0 G 117 * * 2766 * * 438 * * * * * * * * * 3119 * * * * 117 0 * * * * * * 2061 0 0 C 118 * 0 * * * * * * * * * * * * * * * * * * 118 0 * * * * * * 2061 0 0 N 119 * * * * * * * * * * 3132 2362 3192 2236 * 3119 1973 * * * 119 0 * * * * * * 2061 0 0 C 120 * 0 * * * * * * * * * * * * * * * * * * 120 0 * * 0 * * * 2061 0 0 //