HHsearch 1.5 NAME c5ydfA_ FAM FILE c5ydfA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ydfA_.a3m DATE Sat Dec 23 08:24:43 2017 LENG 98 match states, 98 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4838 2.4510 SEQ >ss_dssp CHHHHHHHHHHHTCCEEEETTEEEETTEEEETTCEEEEECTTCSCTTCCCCEEEHHHHHHHHHTTTSCHHHHHHHHHHHTCCCCCHHHHHHHHHHHHC >sa_dssp EBADCADEBCDEEDECCEEEEDACACEEDCDCECEBECCBEDCDEEEEEEDDBCACAABCACECDECDBECADEDAEEEECECADEEBBEEABDDADE >ss_pred CHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC >ss_conf 97899999973388643348656865301155571245407876555666541299999999815786689999999749986542457769987469 >Consensus DPLxxLRxxxxxxxxixxxxxxxxfgdxxxxxxtxTxxxxxxxxxxxxxxxxytLxxixxxxxxxdxxxxxYxxxxxxxxixxvxxxdRkxlixyLxG >c5ydfA_ DVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAATENIPVVRRPDRKDLLGYLNG >UniRef50_A4S4G3(2-101:447) Predicted protein n=3 Tax=Ostreococcus RepID=A4S4G3_OSTLU E=6e-08 s/c=0.58 id=24% cov=95% DPLRLIRDHTIAGiiAESTHDDERIHLKdvDVELRRTTETNY----RSKAG--NKLLKVEAIWYFIKYHvanpDAAHTAYMKAAIAAGFSTLSMLDRKDL IAYLTG >UniRef50_B0D2Q0(6-111:420) RNA polymerase II-associated protein n=3 Tax=Agaricales RepID=B0D2Q0_LACBS E=9e-16 s/c=0.80 id=23% cov=96% DALLILRQAVKSKEPISFSNkdgpctsllnaTHLVISGTSLPKSSPTRYRKPG----AAPSDFYSIEAIYLAWLLRDAPGAEYMKQAREHGlaVGFVSVT ERKSVVDWLE- >UniRef50_C4V7J1(1-81:283) Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V7J1_NOSCE E=2e-12 s/c=0.91 id=22% cov=84% --MKILREIFKNLKNVELTKEKIKMGNMEYDKNMEINIERTTKKK-------YTLEQLTYFLINKDLQYTKYLRECKNNGVTSIFYSDQK-------- >UniRef50_Q6CHW0(2-97:353) YALI0A04345p n=1 Tax=Yarrowia lipolytica RepID=Q6CHW0_YARLI E=1e-14 s/c=0.84 id=21% cov=93% DPLTALRDAIKAGSALSLDKDDIAeataltIGSQTFPLSDTTRVEIDGVPQ--------DLKSVYACWDKAGENIAQYVVFCNTNGITHFPFLQRSDVIK WLKG >UniRef50_D2UXU8(3-89:502) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UXU8_NAEGR E=5e-13 s/c=0.87 id=23% cov=90% DILEQLNNTIKSNTPIINDNTNIIFGEKQYPINGQVKFQSST----------LTLGQVWICLKCINDDYSVYLKQCKEANLNPVNIGIKNLLKSYFN- >UniRef50_B9W773(6-110:370) RNA polymerase II elongation accessory factor, CDC73 family, putative n=10 Tax=Saccharomycetales RepID=B9W773_CANDC E=9e-12 s/c=0.68 id=26% cov=95% -PLKAFRKAVIKEEKIEFfkngektdsinDATEVQFGTdkNKYSLDMVTNFYNDEKLTEAQ-----SLRSVVFCYLHEKDSITDYKVAGENLNIPVFSFL VKTELSTWLHG >UniRef50_UPI00006D0024(11-103:395) hypothetical protein TTHERM_00760490 n=1 Tax=Tetrahymena thermophila RepID=UPI00006D0024 E=9e-16 s/c=0.91 id=26% cov=92% DPLELLREFTINKKDVVKKDQYLFFDQTKLELKTPTAWKKNTGG-------YYTLGDLWLFnqkvQQNMSMKH--YFNQRQSFALEGIDKIDEDEISNYL QG >UniRef50_Q6CS86(3-105:368) KLLA0D03036p n=2 Tax=Saccharomycetaceae RepID=Q6CS86_KLULA E=1e-14 s/c=0.78 id=20% cov=99% --LGELREYLgkdkSNHDLKLISGDGELIDDIVLAKSVVVNGENKDLDELTEfslEGKPVPLRVVIHCWLHRNSSAADYLADCRAKNFTNVSFLHRNDLI QWLSG >UniRef50_C9S8Y7(7-120:345) Cell division control protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S8Y7_VERA1 E=6e-14 s/c=0.69 id=21% cov=101% DPLLLLRQSIASKRAAIPSASPDAADEAPLARAThlhfphprPVSISLGTPTRFISSDRPVDLRSIYFAWLNKDVAIPEYNASATRLNddlgalgkVQNL AFVERLDLFTWLEG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 89 4067 * * * * * * * * * * * * * * * * 1 0 * * * * * * 4720 0 0 V 2 4127 * * * * * * 3991 * * * * 317 * * * * 3701 * * 2 0 * * * * * * 4844 0 0 L 3 * * * * * * * 4446 * 140 4431 * * * * * * * * * 3 0 * * * * * * 5384 0 0 S 4 3496 * 4217 2566 * 4314 * 4686 2571 3308 * * * * 3735 2543 3579 * * * 4 0 * * * * * * 5458 0 0 V 5 2362 * * 4314 * * * 2538 * 1559 * * * 4420 4217 * * 2806 * * 5 0 * * * * * * 5458 0 0 L 6 * * * * 4501 * * 3610 * 194 * * * * * * * * * * 6 0 * * * * * * 5458 0 0 R 7 * * * * * * 4751 * 4975 * * 4420 * 4913 232 * * * * * 7 0 * * * * * * 5458 0 0 Q 8 3388 * 1983 1788 * 4596 * * 3692 * * 4420 * 2347 * * * * * * 8 0 * * * * * * 5458 0 0 Y 9 2563 * * * 3728 * 1999 3547 * * * * * * * 4132 4420 * * 1663 9 0 * * * * * * 5458 0 0 N 10 3401 * * * 4500 * 5123 2435 * 2463 * 4140 * * * 4071 2832 2256 * * 10 74 4314 * 2000 415 * * 5458 1000 0 I 11 2522 * * * * * * 1474 1890 3836 * * * 4913 * 4314 * 4547 * * 11 44 * 5051 * * * * 5458 0 0 Q 12 3050 * 4667 4564 * 4717 4449 * 3593 * * 1891 * 5102 2714 2476 * * * * 12 0 * * * * 0 * 5435 0 1000 K 13 * * * 4501 * 1431 3387 * 1887 4500 * 3734 3999 * 4751 * * * * * 13 152 3322 * 1000 1000 * * 5458 1900 0 K 14 4677 * 2600 2287 * 4596 * * 1769 * * * 5051 * 3409 4562 3482 * * * 14 201 2941 * 1457 653 * * 5458 2275 0 E 15 3331 * 4517 2651 * * * * 2120 4314 * 4500 2365 3812 * * 3213 * * * 15 0 * * * * * * 5458 0 0 I 16 4132 * * * * * * 1380 4314 3379 4751 * 4596 * * 3610 5051 2173 * * 16 114 3718 * 2481 285 * * 5458 1620 0 V 17 * * * 2679 * 5090 * 2119 3812 3657 * 3671 * * * 3535 3120 2700 * * 17 0 * * * * * * 5458 0 0 V 18 * * * 3522 2780 3236 4677 3448 4517 2241 * 3482 4132 * 4975 * * 3367 * * 18 65 4501 * 3459 138 * * 5458 1000 0 K 19 * * 2217 3217 * 5090 * * 2552 * * 3718 * * 5108 2047 3778 4116 * * 19 67 4463 * 2000 415 * * 5458 1000 0 G 20 2836 * 2549 4099 * 1582 * * 3530 * * 2792 * 3925 * * * * * * 20 116 3697 * 2686 244 * * 5458 1606 0 D 21 4031 * 2028 2742 * * 4463 * 4686 * * 4217 * 4517 4751 2757 2494 * * * 21 0 * * * * * * 5458 0 0 E 22 5051 * 3579 2238 4547 4314 4509 * 4500 * * 3126 4132 5108 3566 * 5090 3950 * 3133 22 80 4217 * 3322 152 * * 5458 1000 0 V 23 * * 4132 4314 * * * 1875 * 2267 * * * * * * 3575 2618 * 2595 23 0 * * * * * * 5458 0 0 I 24 2915 * * 5090 4517 * 3888 2920 4500 3003 4217 3950 * 4501 4975 4596 * 3095 * 3777 24 109 3786 * 1960 429 * * 5458 1676 0 F 25 4132 * * * 872 * * 2511 * 3636 4500 * * * * * * 3373 * * 25 0 * * * * * * 5458 0 0 G 26 * * 2064 4217 * 766 * * 4677 * * * * * 4796 4509 * * * * 26 321 2324 * 251 2645 * * 5458 2362 0 E 27 * * 1392 1942 * 4509 * * * * * 3481 * 4517 4596 4562 3352 * * * 27 65 4501 * 1000 1000 * * 5458 1000 0 F 28 2941 * * * 3549 * * 3387 3547 4217 4500 4501 * 2790 * * 3513 4677 * 2398 28 0 * * * * * * 5458 0 0 S 29 3116 * * 3020 * * * * 2981 * * * 4431 3592 * 1847 2482 4370 * * 29 52 4833 * 2585 263 * * 5550 1000 0 W 30 * * * * 1664 * * 4204 * 1795 * * * * * 4377 * * 3621 2234 30 0 * * * * * * 5445 0 0 P 31 3602 * 3616 4554 * 4630 * * 3742 * * 4864 1134 * 3578 3835 * * * 4858 31 0 * * * * * * 5507 0 0 K 32 4093 3766 * * * 4407 * 3931 1324 2467 * * * * 2893 4630 * * * * 32 0 * * * * * * 5507 0 0 N 33 3881 * 2393 4341 * * 4839 * 3698 * * 2110 * * * 1921 3561 * * * 33 0 * * * * * * 5507 0 0 V 34 2559 * 4653 * * 3713 * 5374 * * 3778 * * * * 4881 1122 3015 * * 34 60 4626 * 3000 193 * * 5507 1000 0 K 35 * * * 2383 * * * * 3670 * * * 1292 2533 5128 * 4653 3638 * * 35 0 * * * * * * 5507 0 0 T 36 * * 4407 * * * * 4860 * * 4630 * * * * * 408 3010 * * 36 0 * * * * * * 5507 0 0 N 37 1899 * * * * * * * 4581 * * 1609 4341 * 2598 2758 * * * * 37 0 * * * * * * 5507 0 0 Y 38 * * * * 1401 4578 * 3738 * 3357 * * * * * * * 4653 3495 1845 38 150 * 3338 * * * * 5507 0 0 V 39 * * * 3017 * * 4693 * 2550 4129 4929 * 4331 3699 2694 3534 4378 3049 * 4629 39 230 * 2761 * * * 0 5421 0 2177 V 40 * * * * * * * 3009 2948 2714 * 2760 * * 4483 1774 * 3199 * * 40 0 * * * * * 0 5407 0 3120 W 41 * * 3396 * * 4171 * * 2178 * * 2550 3553 * * 3303 3483 * 3925 3109 41 63 * 4538 * * 1946 433 5407 0 3120 G 42 4458 * 4247 3260 * 1638 * * 4564 * * 4856 * 5078 * 3537 1818 * * * 42 149 * 3353 * * 1001 999 5404 0 3012 T 43 * * 5211 4222 * 2291 * * 2668 3436 * 4896 4289 * 3450 2940 3135 4476 * * 43 46 * 4982 * * * 0 5293 0 3149 G 44 * * 2971 4596 4718 2255 * * 3225 4335 * * 4418 4285 * 2240 3091 * * * 44 244 * 2687 * * * 0 5372 0 3191 K 45 * * 3500 2381 * * * 4506 1614 * * 4188 * 2591 3859 * 4076 * * * 45 550 * 1658 * * 3225 163 5149 0 3889 E 46 3720 * 3975 2415 3798 * * 3677 4012 3795 * * 3490 * 3708 2162 * * * * 46 209 * 2888 * * 2646 251 4394 0 4734 G 47 2802 * * 3664 * 965 * 3783 * * * * * * * 4315 2810 * * * 47 103 * 3858 * * 3303 154 4376 0 4477 Q 48 3081 * * 2821 * * * 3695 * * * * * 2959 2662 2349 2472 * * * 48 237 3790 3654 1585 585 * 0 4431 1000 4561 P 49 * * 3799 2866 * * * * * * * 4068 1321 4213 * 3068 2662 * * * 49 153 * 3313 * * 3577 126 4295 0 4677 R 50 * * 3028 * * 2856 * * 3031 * * 2999 * * 2402 2133 3741 * * * 50 0 * * * * 3120 176 4244 0 4623 E 51 * * 3227 1561 3933 3949 * * 2375 * * * * 4247 4093 3058 * * * * 51 0 * * * * 1743 512 4375 0 4562 Y 52 3619 * * 4225 2100 * 5001 * * 2845 * * 2973 * * * * * * 1582 52 0 * * * * 351 2213 4497 0 4011 Y 53 * * * * 3474 * * * * 3241 * * * * * * * 2463 * 683 53 0 * * * * 0 * 5385 0 1631 T 54 * * 2494 * * * * * 5045 * * 3842 2885 4776 * 2799 1297 * * * 54 0 * * * * * * 5398 0 0 L 55 * * * * 4825 * * 3779 * 411 * * * * * * * 2838 * * 55 0 * * * * * * 5417 0 0 D 56 * * 3906 1773 * 2227 * * 4029 4883 * * * 3929 2270 4080 * * * * 56 0 * * * * * * 5417 0 0 S 57 1624 4486 4441 * 4868 * * 4990 * * * * * 2783 * 1949 4645 3736 * * 57 0 * * * * * * 5417 0 0 I 58 4080 * * * * * * 1916 * 1813 * * * * * 4868 * 1486 * * 58 51 4838 * 2000 415 * * 5417 1000 0 L 59 * * * * 5324 * 4883 5115 * 2603 4879 * * * 4838 * 5320 1815 2571 2314 59 0 * * * * * * 5417 0 0 F 60 4945 4369 * * 1438 * 2992 4542 * 2495 * * * 5119 * * 4883 4007 * 3659 60 0 * * * * * * 5417 0 0 L 61 2115 2017 * * 1897 * * * * 2382 * * * * * * * * * 4017 61 68 4441 * 2000 415 * * 5417 1000 0 L 62 3410 * * * 4883 * * 5012 * 1639 * * * 4441 * * 4868 4376 1472 5004 62 72 4369 * 1000 1000 * * 5417 1000 0 N 63 4838 * 4945 5348 4868 * 4369 5320 2134 2192 4990 5409 * 2133 * * * 3820 * * 63 0 * * * * * * 5417 0 0 N 64 * 4542 4838 4573 5119 * 2381 * 2925 3349 * 1682 * 5282 * * 4879 * * 4102 64 0 * * * * * * 5417 0 0 V 65 3914 * * 5004 * * 3621 3538 2323 4645 4441 5055 4838 3739 2313 4024 * 4421 * * 65 45 5012 * 2000 415 * * 5417 1000 0 H 66 * * 976 3245 * 3628 3787 * 5004 * 5434 3800 * 5239 * 4441 * * * 4868 66 0 * * * * * * 5417 0 0 L 67 4016 * 3755 3416 4868 * * * 3382 1938 3438 * * * * 2751 4085 3654 * * 67 0 * * * * * * 5417 0 0 S 68 3179 * 4542 4369 * 4573 * * 1956 * * 4066 4257 3781 4879 1838 * * * * 68 0 * * * * * * 5417 0 0 H 69 3685 * * * 4883 5019 1399 2414 * * * * 4879 4369 * 5119 * 4573 * 2863 69 68 * 4441 * * * * 5417 0 0 P 70 1947 * * * * 2956 * * 4232 * * * 2756 * 4530 3266 1925 * * * 70 0 * * * * * 0 5278 0 1000 V 71 3041 * 1508 2390 * * * * 5160 * * 4169 * 3360 * * * 2688 * * 71 0 * * * * 0 * 5197 0 1000 Y 72 * * * * 4039 * * * * * * * * * * * * * * 91 72 0 * * * * * * 5348 0 0 V 73 * * * * 4372 * * 2345 5000 2219 2524 4466 * * 4297 * * 2066 * * 73 0 * * * * * * 5348 0 0 R 74 2501 * * * * * * 4598 1984 3194 * 3831 * 2935 3464 * 3996 3925 * * 74 0 * * * * * * 5348 0 0 R 75 2485 * 2929 3108 4854 * * * 2888 4960 * * * 1975 5462 3393 * * * * 75 0 * * * * * * 5348 0 0 A 76 1242 1483 * * * 3167 * * * * * * * * 4372 * 4067 * * * 76 0 * * * * * * 5348 0 0 A 77 2981 * * 4073 * * * 3931 3244 4392 * 4955 * 2495 2269 3283 4350 5243 * * 77 0 * * * * * * 5429 0 0 T 78 2065 * 4392 2248 * 5355 * * 3705 4084 * 2984 * * 4032 3917 3489 * * * 78 0 * * * * * * 5429 0 0 E 79 2126 * 3871 3739 4476 4570 5029 * 3297 2341 * 3587 * * 4084 3864 * * * * 79 0 * * * * * * 5429 0 0 N 80 4476 * 5458 * * 1512 * * 2852 * * 1616 * 4990 4084 5243 * * * * 80 160 3250 * 3008 192 * * 5429 1889 0 I 81 4893 * * * 2816 * * 1511 * 2500 * * * * * * * 1753 * * 81 0 * * * * * * 5429 0 0 P 82 3298 * 5130 3434 * 3217 5525 * 5291 * * 4111 2163 2732 5278 5019 2898 * * * 82 0 * * * * * * 5429 0 0 V 83 3201 5355 * * 3889 3766 4955 * 4145 * 4893 2257 3315 4392 * 4111 3830 3724 * 4570 83 0 * * * * * * 5429 0 0 V 84 5606 * * * 3082 * * 2738 * 2965 5933 * * * * * * 819 * * 84 0 * * * * * * 5429 0 0 R 85 2937 * 4476 * 3792 * * * * * * 3127 3932 * 4479 1619 2820 5294 * 4844 85 0 * * * * * * 5429 0 0 R 86 * * * * 1479 * * 3580 3434 3229 5019 * * * 2878 * 3298 5029 * 4073 86 0 * * * * * * 5429 0 0 P 87 3521 * * * * 4590 * 3822 * 1818 * 4885 2368 * * 5347 2965 2871 * * 87 0 * * * * * * 5429 0 0 D 88 * * 644 2489 * * 5118 4590 * * * * * 3630 * * * 5018 * * 88 0 * * * * * * 5429 0 0 R 89 * * * 4476 * * * * 2838 * * 4392 * 4073 531 * * * * 5933 89 0 * * * * * * 5429 0 0 K 90 4909 * 4476 * * * * * 1130 3746 * 3830 * 3951 3509 4039 3228 * * * 90 0 * * * * * * 5429 0 0 D 91 3393 * 1366 1970 * * * * * 4502 * 5201 3371 * * 4910 4051 * * * 91 0 * * * * * * 5327 0 0 L 92 4471 * * * 4051 * * 2563 * 664 * * * * * * * 3410 * * 92 0 * * * * * * 5327 0 0 L 93 * * * * 5142 * * 1727 4502 1505 * * * * * 3667 4488 3144 4760 * 93 0 * * * * * * 5327 0 0 G 94 2308 * 1900 3678 * 5302 * * 4893 * * 3647 * 4968 * 2364 3525 * * * 94 0 * * * * * * 5327 0 0 Y 95 * * * * 3395 * * * * * * * * * * * * * 1566 818 95 0 * * * * * * 5327 0 0 L 96 * * * * 3395 * * * * 144 * * * * * * * * * * 96 0 * * * * * * 5327 0 0 N 97 * * 4862 2341 * * 4687 * 2693 3939 * 3391 * 3064 4084 2929 3257 * * * 97 0 * * * * * * 5468 0 0 G 98 * * * * * 0 * * * * * * * * * * * * * * 98 0 * * 0 * * * 4940 0 0 //