HHsearch 1.5 NAME c5yc0P_ FAM FILE c5yc0P_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5yc0P_.a3m DATE Sat Feb 17 08:22:46 2018 LENG 31 match states, 31 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.5403 3.7258 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEEDEEDEEDEDDDDDDDEDEDEEDEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9359999999999999887775799986339 >Consensus wqewexxitqslexaqiqqeknxyelqklnk >c5yc0P_ WQEWEQKITALLEQAQIQQEKNEYELQKLDK >UniRef50_B2LT44(587-623:713) Envelope glycoprotein gp160 n=1528 Tax=Primate lentivirus group RepID=B2LT44_9HIV2 E=3e-07 s/c=1.52 id=81% cov=100% WQEWEQKvryweanISQSLEQAQIQQEKNLYELQKLN- >UniRef50_P18094(622-658:860) Transmembrane protein gp41 n=433 Tax=Primate lentivirus group RepID=ENV_HV2BE E=4e-06 s/c=1.42 id=71% cov=100% WQEWEKQvryleanISQSLEEAQIQQEKNMYELQKLN- >UniRef50_P19503(647-683:889) Transmembrane protein gp41 n=1477 Tax=Lentivirus RepID=ENV_SIVSP E=4e-05 s/c=1.32 id=74% cov=100% WQEWEKQvnfleanITQSLEEAQIQQEKNTYELQKLN- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * W 1 * * * * * * * * * * * * * * * * * * 0 * 1 0 * * * * * * 1218 0 0 Q 2 * * * * * * * * * * * * * 0 * * * * * * 2 0 * * * * * * 1218 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1218 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 1218 0 0 E 5 * * * 0 * * * * * * * * * * * * * * * * 5 0 * * * * * * 1218 0 0 Q 6 * * * * * * * * 1049 * * * * 953 * * * * * * 6 0 * * * * * * 1218 0 0 K 7 * * * * * * * * 953 * * * * 1049 * * * * * * 7 1862 464 * 2807 222 * * 1218 1129 0 I 8 * * * * * * * 0 * * * * * * * * * * * * 8 0 * * * * * * 1218 0 0 T 9 * * * * * * * * * * * * * * * 1049 953 * * * 9 0 * * * * * * 1218 0 0 A 10 1862 * * * * * * * * * * * * 464 * * * * * * 10 0 * * * * * * 1218 0 0 L 11 * * * * * * * * * 1862 * * * * * 464 * * * * 11 0 * * * * * * 1218 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1218 0 0 E 13 * * * 0 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1218 0 0 Q 14 * * * 1049 * * * * * * * * * 953 * * * * * * 14 0 * * * * * * 1218 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1218 0 0 Q 16 * * * * * * * * * * * * * 0 * * * * * * 16 0 * * * * * * 1218 0 0 I 17 * * * * * * * 0 * * * * * * * * * * * * 17 0 * * * * * * 1218 0 0 Q 18 * * * * * * * * * * * * * 0 * * * * * * 18 0 * * * * * * 1218 0 0 Q 19 * * * * * * * * * * * * * 0 * * * * * * 19 0 * * * * * * 1218 0 0 E 20 * * * 0 * * * * * * * * * * * * * * * * 20 0 * * * * * * 1218 0 0 K 21 * * * * * * * * 0 * * * * * * * * * * * 21 0 * * * * * * 1218 0 0 N 22 * * * * * * * * * * * 0 * * * * * * * * 22 0 * * * * * * 1218 0 0 E 23 * * * 1862 * * * * * 2049 2049 * * * * * 2049 * * * 23 0 * * * * * * 1218 0 0 Y 24 * * * * * * * * * * * * * * * * * * * 0 24 0 * * * * * * 1218 0 0 E 25 * * * 0 * * * * * * * * * * * * * * * * 25 0 * * * * * * 1218 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1218 0 0 Q 27 * * * * * * * * * * * * * 0 * * * * * * 27 0 * * * * * * 1218 0 0 K 28 * * * * * * * * 0 * * * * * * * * * * * 28 0 * * * * * * 1218 0 0 L 29 * * * * * * * * * 0 * * * * * * * * * * 29 0 * * * * * * 1218 0 0 D 30 * * 1862 * * * * * * * * 464 * * * * * * * * 30 0 * * * * * * 1218 0 0 K 31 * * * * * * * * 0 * * * * * * * * * * * 31 0 * * 0 * * * 1000 0 0 //