HHsearch 1.5 NAME c5xyiV_ FAM FILE c5xyiV_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5xyiV_.a3m DATE Sat Sep 2 08:36:24 2017 LENG 87 match states, 87 columns in multiple alignment FILT 28 out of 32 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4503 1.8551 SEQ >ss_dssp CCCSSSCCCSSCCCCBCTTTCCBCCSSCTTCEECCEEEEETTTEEEEEEECCEECHHHHHHTTHHHHHHHHHHHHTSCSSSSSCCCC >sa_dssp EEEEEDEEDEEEECDEADCDEDEBDEECEDBCECECDCEEEEEEEDEEDCDABBBCDBDEEEEBEDBDCDBBCEDECDEEECEEEEE >ss_pred CCCCCCCEEEEEECCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC >ss_conf 946566688563143322447464666754899982301757500683589997006640575168999985315713210014559 >Consensus MxNdxgxxVDlYIPRKCSxTnrlIxakDHasVQInIxxvdxngxxxgxxxtxaixGxiRxxGesDxalxrLxxxxgxlxxvxxxxxx >c5xyiV_ MQNDAGEIVDMLIPRKCMATDRLIPPHDHASVQIQIAKVNDDGLPTGEFETVVFSGYVRALGESDYALNRIATEKGLLTGVYRNEAH >UniRef50_P63220(1-80:83) 40S ribosomal protein S21 n=21 Tax=Coelomata RepID=RS21_HUMAN E=2e-14 s/c=1.00 id=45% cov=92% MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKvTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVS-------- >UniRef50_A0BWW0(1-77:147) Chromosome undetermined scaffold_133, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0BWW0_PARTE E=9e-21 s/c=1.31 id=36% cov=90% MINDEKQVVDIYVPRKCQYTNMILNSSDYSSVQINVGQVDENGVYNKKNNTVILAGYLRQKGQSAAALEAILRQRGV---------- >UniRef50_B0ET03(7-79:86) 40S ribosomal protein S21, putative n=2 Tax=Entamoeba RepID=B0ET03_ENTDI E=7e-20 s/c=1.34 id=41% cov=85% --------IELYIPRHCSVTHTLIAADDHAAVQILIPHVNENGVILPESTVYTVKGSVRKDGISDHSLNRQFQKDGFLKTV------ >UniRef50_A9BL43(12-81:83) Rps21 n=1 Tax=Cryptophyta RepID=A9BL43_9CRYP E=4e-18 s/c=1.32 id=34% cov=82% -----------YIPRKCSFSNQILTSKDHSSIQISIQALNLNGISLRKNKTYAINGKIRRKGISDLALNLLTEETDFLQKI------ >UniRef50_Q3LW63(1-61:108) Putative uncharacterized protein n=1 Tax=Bigelowiella natans RepID=Q3LW63_BIGNA E=0.0003 s/c=0.76 id=23% cov=71% MFNNHGLFIDSYVPLYCSWTKKIIEPNSKGHLIINIRCLNTRKELNKRIIAIVIATSIRSQ-------------------------- >UniRef50_Q3E902(1-77:85) 40S ribosomal protein S21-2 n=7 Tax=Eukaryota RepID=RS212_ARATH E=3e-26 s/c=1.55 id=45% cov=90% MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV---------- >UniRef50_A8B484(8-89:89) Ribosomal protein S21 n=2 Tax=Giardia intestinalis RepID=A8B484_GIALA E=3e-20 s/c=1.21 id=47% cov=91% MKNSSGVVVDAYIPRKCSATNRLIGPKDHAAVQLSVARVNDKGkMIENNYVTFAFCGAIRSRGGVDSAFMLLAQEHGLM--------- >UniRef50_Q98SD3(1-74:82) 40S ribosomal protein S21 n=1 Tax=Guillardia theta RepID=Q98SD3_GUITH E=5e-16 s/c=1.15 id=39% cov=86% MNSTNKKIVGEYIPRKCSLSNKLINNKDHASIQISIGVLDKNDLFKGEYDIFAFSGLMRKKGKSDYAIVNLIEK------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 66 * * * * * * 4486 * * 1 0 * * * * * * 2867 0 0 Q 2 * * * * 2100 * * 3175 2782 * * 3669 * 1211 * * * * * * 2 0 * * * * * * 2947 0 0 N 3 * * * * * * * * * * * 113 * * * 3733 * * * * 3 0 * * * * * * 3043 0 0 D 4 4733 * 1070 1980 * * * * * * * 3190 * * * 4386 3733 * * * 4 0 * * * * * * 3043 0 0 A 5 1645 * 4811 2036 * * 3197 * * * * 3269 * 3209 * 3648 * * * * 5 0 * * * * * * 3036 0 0 G 6 * * * * * 395 * * 2060 * * * * * * * * * * * 6 0 * * * * * * 3036 0 0 E 7 * * 4861 1751 * 3533 * * 3801 3197 * * * 2360 5777 * * 2408 * * 7 0 * * * * * * 3036 0 0 I 8 * * * * 1553 * * 2850 * 2810 5291 2480 * * * * 4666 2902 * * 8 0 * * * * * * 3036 0 0 V 9 * * * * * * * 2662 * 4345 4672 * * * * * 5228 460 * * 9 0 * * * * * * 3116 0 0 D 10 * * 371 3075 * 3861 * * * * * 4672 * * * * * * * * 10 0 * * * * * * 3116 0 0 M 11 4536 * * 3861 * * * 2307 * 897 4436 * * * * 3280 * * * * 11 0 * * * * * * 3116 0 0 L 12 * * * * * * * * * 4440 * * * * * * * * * 68 12 0 * * * * * * 3196 0 0 I 13 * 3699 * * * * * 894 * 4357 * * * * * * * 1573 * * 13 0 * * * * * * 3196 0 0 P 14 * * * * * * * * * * * * 0 * * * * * * * 14 0 * * * * * * 3196 0 0 R 15 * * * * * * * * 4713 3313 * * * * 215 * * * * * 15 0 * * * * * * 3196 0 0 K 16 * * * * * * 4208 * 313 * * * * * 4639 * * * * 3313 16 0 * * * * * * 3196 0 0 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 3196 0 0 M 18 3782 * * * * * 4006 * * * 4440 * * 4282 * 382 * * * * 18 0 * * * * * * 3196 0 0 A 19 1320 * * * 4473 * * * * 4126 * * * * * 2815 4357 3407 2639 4282 19 0 * * * * * * 3196 0 0 T 20 * * * * * * * * * * * * * * * 1702 530 * * * 20 0 * * * * * * 3196 0 0 D 21 * * 4440 * * 4336 4208 * 2493 * * 809 * * * 3296 * * * * 21 0 * * * * * * 3196 0 0 R 22 * * * * * * 5109 * 2663 * 4282 5010 * 4473 736 * 3551 * * * 22 0 * * * * * * 3196 0 0 L 23 * * * * * * * 1126 * 884 * * * * * * * * * * 23 0 * * * * * * 3196 0 0 I 24 * * * * * * * 146 * 3375 * * * * * * * * * * 24 0 * * * * * * 3196 0 0 P 25 4208 * * 2605 * 2483 3284 * * * * 3202 2845 * 5107 * 2164 * * * 25 0 * * * * * * 3196 0 0 P 26 1000 * * * * * * * * * * 4126 2168 * * 2386 * 5109 * * 26 0 * * * * * * 3196 0 0 H 27 * * 4208 * * * 3694 * 611 * * 3313 * * * 4282 5017 * * 5010 27 0 * * * * * * 3196 0 0 D 28 * * 357 3074 * * * * * * * * * * * 3313 * * * * 28 0 * * * * * * 3196 0 0 H 29 * * * * * * 288 * 2943 * * * * * * * * * * 4302 29 0 * * * * * * 3143 0 0 A 30 734 * * * * 2060 * * * * * * * * * 2949 5082 * * * 30 0 * * * * * * 3143 0 0 S 31 1898 * * * * * 3300 * * 3702 * * * * * 854 * * * * 31 0 * * * * * * 3143 0 0 V 32 * * * * * * * 1519 * 3300 * * * * * * * 863 * * 32 0 * * * * * * 3143 0 0 Q 33 * * * * * * * 3300 * * * * * 154 * * * * * * 33 0 * * * * * * 3143 0 0 I 34 * * * * * * * 257 * 3050 4551 * * * * * * * * * 34 0 * * * * * * 3143 0 0 Q 35 4052 * 4869 * * * * * * 4116 * 765 * 3507 * 2544 * * * * 35 0 * * * * * * 3143 0 0 I 36 * * * * 3732 * * 868 * * * * * * * * * 1408 * * 36 0 * * * * * * 3143 0 0 A 37 1752 * * * * 1540 * * * * * * 4116 4381 3300 * * 2717 * * 37 71 * 4378 * * * * 3143 0 0 K 38 4321 3259 2401 3942 * * 2347 * 3658 * 4199 3394 * 3868 4608 * * 4150 * * 38 0 * * * * 0 * 3101 0 1000 V 39 * * * * * * * * * 1500 4378 * * * * * * 741 * * 39 0 * * * * * * 3143 0 0 N 40 * * 935 * * 4983 4339 * * * * 1336 * * * * * * * * 40 0 * * * * * * 3144 0 0 D 41 2812 * 3534 2418 * * * * 3040 4376 4339 * 2228 * 4334 * 3296 * * * 41 247 2668 * 0 * * * 3144 1502 0 D 42 * * 3553 4859 * * * * 4684 * * 1058 * * 3296 5698 2331 4591 * * 42 0 * * * * * * 3144 0 0 G 43 * * 4210 * * 562 * * 3296 * * * * * * * 3093 4339 * * 43 228 2775 * 557 1642 * * 3144 1852 0 L 44 * * * 3296 * 4591 * 4376 * 2155 2775 * * * 3338 * * 1693 5070 * 44 0 * * * * * * 3144 0 0 P 45 * * * * 2229 * * 2084 * 2911 4803 * 4398 * 4591 4376 * * * 2030 45 0 * * * * * * 3144 0 0 T 46 * * 5627 4684 * 4598 * * 4210 2815 4591 1495 3924 * * 5113 2236 * * * 46 0 * * * * * * 3144 0 0 G 47 * * * 4803 * 681 * * 2702 4591 * 4684 4106 * 4376 * * * * * 47 0 * * * * * * 3144 0 0 E 48 * * * 1720 * * 5698 * 2637 * * 4684 * 2214 3034 4598 3342 * * * 48 0 * * * * * * 3144 0 0 F 49 * * * * 2046 * * 3296 4598 * * 2742 * * * 2407 2690 * * 3037 49 0 * * * * * * 3144 0 0 E 50 * * 4210 2761 * * * 3296 2456 * * 4269 * * * 3344 1621 4684 * * 50 0 * * * * * * 3144 0 0 T 51 2911 * * * * * * 4162 * * * 4955 * * 4812 * 626 3388 * * 51 0 * * * * * * 3129 0 0 V 52 * * * * 1441 * * 3276 * 4003 * * * * * * * 2784 * 1640 52 63 4549 * 0 * * * 3129 1000 0 V 53 842 3942 4574 * * * * 4225 * * * * 4955 * * * 4091 2390 * * 53 0 * * * * * * 3129 0 0 F 54 * * * * 2786 * * 989 * 1928 5073 * * * * * * 4091 * * 54 0 * * * * * * 3129 0 0 S 55 1706 1896 * * * 4695 * * 4091 * * 4314 * * * 1851 * * * * 55 0 * * * * * * 3129 0 0 G 56 * * 3652 * * 291 * * * * * * * * * * 3276 * * * 56 0 * * * * * * 3129 0 0 Y 57 2800 * * * 2864 * 4262 * 4314 4162 * * * * * 2294 * 3652 * 1850 57 0 * * * * * * 3129 0 0 V 58 * * * * * * * 1091 * 3077 4162 * * * * * 5675 1571 * * 58 0 * * * * * * 3129 0 0 R 59 * * * * * * * * * * * * * * 0 * * * * * 59 33 * 5485 * * * * 3129 0 0 A 60 2674 * 5037 * * * * * 3111 * * * * 2391 1967 1996 * * * * 60 0 * * * * * 0 3137 0 1000 L 61 * * 4082 * * * * * 2009 2609 2913 5182 * 1853 3452 * * * * * 61 0 * * * * * 0 3137 0 1000 G 62 3499 * * * * 212 * * * * * * * * * 4380 * * * * 62 0 * * * * * 0 3012 0 1000 E 63 * * 3084 790 * 4246 * 3130 3895 * * * * 3843 * * * * * * 63 0 * * * * * 0 3012 0 1000 S 64 3316 * * * * 3535 * 4293 * * * * * * * 495 * 4246 * * 64 0 * * * * * 0 3012 0 1000 D 65 3843 * 180 4394 * * * * * * * * * * * * * * * * 65 0 * * * * * 0 3012 0 1000 Y 66 2395 * 1852 * * * 2788 * * 4289 4380 * * * * 2551 * * * 3081 66 0 * * * * * 0 3012 0 1000 A 67 951 1904 * * * 4517 * * * * * * * * * 2541 * * * * 67 0 * * * * * 0 2990 0 1000 L 68 * * * * 3272 * * 1417 * 1176 4810 * * * * * * 4517 * * 68 0 * * * * * 0 2990 0 1000 N 69 * * 3681 3761 * * * * * 3235 4211 1062 * * * * 4335 2648 * * 69 0 * * * * 0 * 2990 0 1000 R 70 3052 * * * * * 3549 * * 3252 4290 3863 * * 813 * * * * * 70 0 * * * * * * 2994 0 0 I 71 * * * * * * * 2583 * 438 5015 * * 3964 * * * * * * 71 71 4373 * 1000 1000 * * 2994 1000 0 A 72 1081 * * * 3964 * * 3863 * 2651 4820 * * * * * 3425 5015 3720 * 72 0 * * * * * * 2994 0 0 T 73 * * * 3051 * * 3524 3549 2789 * * 4373 * 1885 3790 5015 4225 4290 * 4820 73 0 * * * * * * 2994 0 0 E 74 5107 * 3483 1832 * * * * 1422 * * * 5015 3790 4290 4497 5115 * * * 74 0 * * * * * * 2994 0 0 K 75 * * 1931 4464 * 4630 3962 * 1502 * * * * * 2602 * 3835 * * * 75 0 * * * * * * 2856 0 0 G 76 * * 3835 * * 704 * * 1852 * * * * * * 4674 * * * * 76 0 * * * * * * 2856 0 0 L 77 * * * * 2730 * * 2477 * 2174 2608 * 4391 * * * * 2361 4582 * 77 0 * * * * * * 2865 0 0 L 78 * * * * * * * 3059 * 755 2861 * * * * * * 2740 * * 78 0 * * * * * * 2730 0 0 T 79 * * * * * * * * 2813 * * * * 2717 * 1019 2238 * * * 79 0 * * * * * * 2430 0 0 G 80 * * * * * 1595 * * 1534 * * * * * * * 1627 * * * 80 0 * * * * * * 1914 0 0 V 81 * * * * * * * 1534 * * * * * * * * * 611 * * 81 0 * * * * * * 1914 0 0 Y 82 * * * * * * * * * * * * * * * * * * * 0 82 0 * * * * * * 1000 0 0 R 83 * * * * * * * * * * * * * * 0 * * * * * 83 0 * * * * * * 1000 0 0 N 84 * * * * * * * * * * * 0 * * * * * * * * 84 0 * * * * * * 1000 0 0 E 85 * * * 0 * * * * * * * * * * * * * * * * 85 0 * * * * * * 1000 0 0 A 86 0 * * * * * * * * * * * * * * * * * * * 86 0 * * * * * * 1000 0 0 H 87 * * * * * * 0 * * * * * * * * * * * * * 87 0 * * 0 * * * 1000 0 0 //