HHsearch 1.5 NAME c5xvnM_ FAM FILE c5xvnM_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5xvnM_.a3m DATE Sat Oct 7 08:16:52 2017 LENG 108 match states, 108 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4209 0.1116 SEQ >ss_dssp CCCTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEETTEEEEEESSHHHHHHHHHHHHHTCCSCSEEEEEEECHHHHHTCCCSSSCCCCCGGGSC CSSCCSCC >sa_dssp EDDECABACACBEBCEEDEDCDECDEEBCEBADECDBCDCEECCBBCCBDDDECBEDADDDBEEDEBECEECDDEDCBCEDBDECECEEDEDDEEDECCC EEEDEEEE >ss_pred CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCEEEEECCCCCCCCCCC CCEEEECC >ss_conf 9525899999981467898899999999999997586332023113341586799999999997199997089999861574537899726654443782 30688329 >Consensus mxyrxMrxlvxFDLPxxtkxxrkxyxkFRkxLlxxGfxmxQxSVYxRxxxxxxxxxxxxxrikxxlPxxGxVriLxiTekQyxxmxxlxGxkxxxxxxxx xxlvxxxx >c5xvnM_ MSYRYMRLLLMFDMPTDTASDRKAYRKFRKFLINEGFIMHQFSVYSKILLNDTANKAMLARLKQNNPQRGLITLLNVTEKQFSRMIYLHGEQDNRVANSD ERIVFLGE >UniRef50_A6VLA9(6-108:108) CRISPR-associated protein Cas2 n=12 Tax=Proteobacteria RepID=A6VLA9_ACTSZ E=8e-12 s/c=0.70 id=36% cov=94% ----FMRMIVLFDLPVTTKAKMRAANQFRQFLLKDGYQMLQLSIYSRIIRGRDSMEKHHKRLVEHLPEEGSIRCISITEKQFANMEILVGEkklQEKKV- NANQLLLF--- >UniRef50_Q5HK88(1-101:101) CRISPR-associated protein Cas2 n=2 Tax=Bacilli RepID=Q5HK88_STAEQ E=7e-22 s/c=1.03 id=34% cov=94% -----MYLLVSFDLPRDTKLERRIASKYRLRLIELGFSMKQFSLYERYVSNVQKKDKILEILKQEIPDTGSITLYILPDEVNSNQITILGKEVKLAVNKE PKLIFI-- >UniRef50_C9RJP3(7-110:111) CRISPR-associated protein Cas2 n=20 Tax=Bacteria RepID=C9RJP3_FIBSS E=2e-34 s/c=1.40 id=30% cov=97% --YRIMWILCFFDLPTETKIERQRHSEFRKNLLKDGFSRFQLSIYVRHCASVENAEVHIARVKSFMPPDGSVSILCITDKQFGKIQVFYGRKEKPKPKST GQLELF-- >UniRef50_C0W0W6(6-106:106) CRISPR associated protein n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0W6_9ACTO E=1e-27 s/c=1.23 id=27% cov=94% -----MWLVVMFDLPVVTKAQRRAATQYRNRLLDCGFSMVQFSVYARYRPTGGTDVPVMNAVTRGIPAGGKVRVMTVTDKQWSSMMRFSNNKEETEPETP EQLTIF-- >UniRef50_B2KB48(5-102:108) CRISPR-associated protein Cas2 n=2 Tax=Elusimicrobia RepID=B2KB48_ELUMP E=2e-22 s/c=1.09 id=32% cov=83% --YKTMWILIAFDLPVKTKTQMRIANKFRQTLKNSGFIMLQKSIYSYYAFSKERCDIIEKQIKQIVPDNGHICFLFFTDRMFKMTKHFYGR--------- -------- >UniRef50_C4Z7V5(9-104:118) CRISPR-associated protein Cas2 n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z7V5_EUBE2 E=6e-19 s/c=0.99 id=30% cov=83% --WRGLRNEITFILsPTEKWGTKTEYTKLKKFLHKDGYLRIAPEVYMRIVQNRKASEKHFRRIEEYAPKTGTVRLLRLTEKQYNNIYLVTGE-------- --------- >UniRef50_A8ABK9(4-83:85) CRISPR-associated protein Cas2 n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8ABK9_IGNH4 E=0.0007 s/c=0.56 id=23% cov=69% -----VYVIVSYDI----KDDRKR-LKVMKRLLALGFSRLQKSVYVR-RGSRGDAKDAFNATVKYLDDGDKLFIIVVSDKEFRE---------------- -------- >UniRef50_Q7NAI0(22-122:124) Putative uncharacterized protein n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAI0_MYCGA E=2e-23 s/c=1.09 id=32% cov=91% ---RYMRIVIFYDIY-ETEEVDKLAKKFRDNLISLGYFMIQYSVYCKCIGSHTMYDYEIKKIRKILPVKANVRILLLSEKQYQNMLIISGEKNlNEIYND LE------- >UniRef50_B7KM78(1-87:91) CRISPR-associated protein Cas2 n=3 Tax=Cyanobacteria RepID=B7KM78_CYAP7 E=1e-10 s/c=0.78 id=28% cov=73% -----MLVLVVYDIP-----DNKRRTKLSKFL--EGYgERVQWSVFE-CFLSLEEMRVLYQKVKKRVePLEDNVRFYWISNEAVSRVLTIGGE------- ---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2353 0 0 S 2 * * * * * * * 3295 3463 * * * * * 1014 1680 * * * * 2 0 * * * * * * 2721 0 0 Y 3 * * * * 4058 * * * * * * 4161 * * * * * 4184 2443 632 3 0 * * * * * * 3331 0 0 R 4 * * * 3275 * * 4270 * 2472 * * 4777 * * 671 * * * * * 4 0 * * * * * * 3576 0 0 Y 5 4325 * * * 1644 3648 * 2464 4055 * * * * * * * 3333 * * 2254 5 0 * * * * * * 3603 0 0 M 6 * * * * * * * * * 3755 291 * * * * * * 3206 * * 6 0 * * * * * * 4181 0 0 R 7 * * * * * 4829 * * * 4390 * * * * 894 * * * 1781 3503 7 0 * * * * * * 4196 0 0 L 8 4516 * * * * * * 2625 * 1520 2826 4494 * * * * * 1942 * * 8 0 * * * * * * 4196 0 0 L 9 * * * 4494 4045 * * 1955 * 1183 3548 * * * * * * 3168 * * 9 0 * * * * * * 4196 0 0 L 10 3873 3865 * * * * * 2670 * 2969 * * * * * * * 790 * * 10 0 * * * * * * 4196 0 0 M 11 3720 * * * 1718 * * 5946 * 4920 1509 * * * * 3652 4570 3807 * 5243 11 0 * * * * * * 4368 0 0 F 12 * * * * 399 * * * * 5170 * * * * * * * * * 2224 12 0 * * * * * * 4368 0 0 D 13 * * 105 * * * * 4570 * * * * * * * 5170 * * * * 13 41 * 5170 * * * * 4368 0 0 M 14 * * * * * * * 2768 * 406 4778 * * * * * * 4013 * * 14 139 4252 4656 0 * 0 * 4361 1000 1000 P 15 * * * * * * * * * * * * 155 * * 4628 * * * 4028 15 108 * 3797 * * * 0 4352 0 1000 T 16 * * * * 4433 * * * * * 4312 * * * 4413 4537 1191 1414 * * 16 0 * * * * 1440 663 4286 0 2048 D 17 * * 2669 2120 * 4303 5492 5462 2859 5515 * 4101 * 4389 * 5139 3719 2764 * * 17 52 * 4810 * * * 0 4268 0 1549 T 18 * * 4494 5096 * * * * 3007 * * * * * * 3015 560 * * * 18 0 * * * * 508 1752 4217 0 2133 A 19 3482 * 4148 3559 * * 5009 * 1005 * * * 3317 * 4571 4927 * * 3949 * 19 0 * * * * * 0 4324 0 1000 S 20 2948 * 3890 1854 * 3852 * 4596 3488 3402 5756 4019 * 5864 * 4610 4184 4693 * * 20 0 * * * * 0 * 4324 0 1000 D 21 5537 * 1919 1832 * * * * 3931 * * 4547 * 2274 * * 3448 5239 * * 21 0 * * * * * * 4405 0 0 R 22 * * 5239 * * * * 5612 3126 5821 3917 3308 * 5670 748 * 4693 * * * 22 0 * * * * * * 4405 0 0 K 23 5332 * 5792 * * * 5539 5555 1162 5049 * * * 3927 1806 5729 3904 * * * 23 0 * * * * * * 4405 0 0 A 24 1947 * 4018 2394 * * 5802 3089 * 4438 * 2930 * 5263 3277 5070 5886 * * * 24 57 * 4699 * * * * 4405 0 0 Y 25 1302 * * * * 5777 5464 * * * * * * * 4486 * * * * 974 25 0 * * * * 0 * 4352 0 1000 R 26 4453 * * * * * * 5332 5239 4699 * 2975 5070 4357 2462 3306 1531 5049 * * 26 0 * * * * * * 4405 0 0 K 27 5460 * 5263 5504 * * * 4945 1148 4448 * 3714 * 3518 2707 * 5555 4682 * 5457 27 0 * * * * * * 4405 0 0 F 28 * * * * 415 * * * * 3258 * * * * * * * 4699 * 3227 28 0 * * * * * * 4405 0 0 R 29 * * * * * * 5049 * 3826 * 4699 * * * 359 4551 * * * 4693 29 0 * * * * * * 4405 0 0 K 30 * * 5239 * * * 4627 * 643 4721 * 3127 * 3917 4816 * 4693 * * * 30 0 * * * * * * 4405 0 0 F 31 3656 * 4453 4121 1540 * 3757 * * * * 2786 * * 3254 3760 4872 * * 4575 31 0 * * * * * * 4405 0 0 L 32 * * * * * * * 4900 * 49 * * * * * * * * * * 32 63 * 4551 * * * * 4405 0 0 I 33 * * * 5338 * * 4710 1513 4184 1204 * * * 3911 5009 * * * * * 33 0 * * * * * 0 4324 0 1000 N 34 3767 * 2739 2934 * * * * 1733 * * 3039 * 4700 4285 2902 * * * * 34 0 * * * * 0 * 4324 0 1000 E 35 * 5138 1576 2089 * * * * * 1988 5221 4459 * * * 3700 * * * * 35 0 * * * * * * 4405 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 4468 0 0 F 37 * * * * 580 * * * * * * * * * * * * * * 1594 37 63 4556 * 0 * * * 4468 1000 0 I 38 * 4878 5851 2551 3381 * * 2693 * 3754 4196 * * 4978 5741 2474 3884 4014 * 4694 38 0 * * * * * * 4468 0 0 M 39 * * * * * * * * * * 532 * * * 1698 * * * * * 39 0 * * * * * * 4468 0 0 H 40 * * * * 4625 * 4895 1932 4718 2470 2346 * * 5548 * 4374 * 2688 * 5384 40 0 * * * * * * 4468 0 0 Q 41 3477 * * * * * 5049 * * * * * * 184 * * * * * * 41 0 * * * * * * 4468 0 0 F 42 * * * 4143 1495 * * * 3432 3461 * * 3477 * * * * * 4080 1964 42 0 * * * * * * 4468 0 0 S 43 * * * 3477 * * * * * * * * * * * 136 * * * * 43 0 * * * * * * 4468 0 0 V 44 * 5297 * * * * * 2390 * 3886 * * * * * * * 482 * * 44 0 * * * * * * 4468 0 0 Y 45 * * * * 4556 * * * * * * * * * * * * * * 63 45 0 * * * * * * 4468 0 0 S 46 2355 3071 * 3635 * 5851 * * * * 2714 * * * * 2297 4807 2529 * 5450 46 63 * 4556 * * * * 4468 0 0 K 47 * * * * * * * * 1852 * * * * * 541 * * * * 4803 47 59 * 4648 * * 0 * 4385 0 1000 I 48 5467 3807 * * 3377 * 4496 2232 * 3299 * 4875 * * * * 3946 2940 * 2173 48 0 * * * * 0 * 4419 0 1000 L 49 4182 1418 * * 3992 * * 2941 * 4295 4747 * * * 3970 * 4791 2399 * * 49 0 * * * * * * 4468 0 0 L 50 3083 * * * 4873 3089 * 4162 4232 3358 * 4674 3257 3624 3314 2965 5957 4207 * * 50 0 * * * * * * 4468 0 0 N 51 * 5803 * * * 2732 * * * * * 1407 * * * 1746 3026 4897 * * 51 0 * * * * * * 4468 0 0 D 52 5221 * 3688 * * 3968 3345 5543 3812 3587 4404 5905 5803 3882 1895 4725 5851 4063 * 5384 52 0 * * * * * * 4468 0 0 T 53 3373 * 3435 1782 * 3601 * * 3040 * * * * 4209 * 3603 2476 * * * 53 0 * * * * * * 4468 0 0 A 54 2094 * 4751 3879 4699 4150 5877 * 3706 * 3204 3585 * 4060 3528 3223 5230 * * * 54 0 * * * * * * 4468 0 0 N 55 1428 4873 5230 * 3088 * * 5075 4718 * 2844 4246 * * 5548 3687 * 5244 * 3946 55 0 * * * * * * 4468 0 0 K 56 4251 * 2203 2571 * 5747 * 5912 3225 5221 * 4001 4694 4111 2960 5297 4916 4412 * * 56 0 * * * * * * 4468 0 0 A 57 3147 * 4751 * 4975 * * 4182 1837 5957 * * 5230 * 6001 3421 3311 2961 4747 3946 57 0 * * * * * * 4468 0 0 M 58 4148 * * 3311 5443 * 1794 2982 * 3271 4152 * * * 5432 4715 4834 3964 * 3561 58 0 * * * * * * 4461 0 0 L 59 5877 5235 * 2663 3269 4214 4964 2170 4639 3519 4498 * * * * 5469 * 2994 * 3900 59 0 * * * * * * 4461 0 0 A 60 3333 * 4345 4118 * 5827 4915 5647 1855 * * 2384 * 3620 2845 4841 * * * * 60 0 * * * * * * 4500 0 0 R 61 3087 * * * * * * 4097 2417 * * 4077 * 4309 1098 4918 5223 * * * 61 0 * * * * * * 4500 0 0 L 62 4841 * * * * * * 1780 * 2042 4213 * * * * * 4745 1557 * * 62 0 * * * * * * 4500 0 0 K 63 4896 * * 2709 * 4179 * 4578 1312 5833 * * * 4601 3209 4814 5291 3548 * * 63 0 * * * * * * 4500 0 0 Q 64 3229 * * 3013 * * * * 1719 5872 5462 5906 * 3094 3012 2854 5067 * * * 64 38 5257 * 1000 1000 * * 4500 1000 0 N 65 4162 * * 4334 3242 5291 4961 3040 3854 5365 5483 1844 * * 4541 4590 * 4179 * 3726 65 0 * * * * * * 4500 0 0 N 66 4000 * * * * * * 2424 3872 1200 5535 4124 * * 5739 * * 2739 * * 66 63 4541 * 0 * * * 4500 1000 0 P 67 * * 4745 * * * * * * 4356 * * 130 * * * * * * * 67 24 5942 * 1000 1000 * * 4500 1000 0 Q 68 3430 * 3207 3043 * * 4921 * 2903 4118 * 4814 2037 5875 * 3547 4472 5246 * * 68 0 * * * * * * 4500 0 0 R 69 4594 * 3558 2785 * 2483 * * 2412 * * 3732 * 5621 3214 * 3191 5104 * 5647 69 0 * * * * * * 4500 0 0 G 70 3251 * 3127 * * 357 * * * * * * * * * * * * * * 70 0 * * * * * * 4483 0 0 L 71 * * 4840 4407 * * 3430 5590 3185 3082 5356 2152 * * * 2417 3787 3892 * * 71 0 * * * * * * 4483 0 0 I 72 * * * * * * * 1948 * 3781 * * * * * * * 582 * * 72 0 * * * * * * 4483 0 0 T 73 * 4862 * 5548 4738 5664 4376 * * * * 5071 * 3144 883 4423 3771 4888 * * 73 0 * * * * * * 4483 0 0 L 74 5605 3752 * * 3183 * * 1549 * 2627 * * * * * 4036 3887 2618 * * 74 0 * * * * * * 4483 0 0 L 75 * * * * 5211 * * 3245 * 474 3907 * * * * * * * * 3624 75 0 * * * * * * 4483 0 0 N 76 4063 3654 * * 4130 * 5590 3194 3723 3997 4708 4634 4827 3973 4050 3911 3040 3919 4532 * 76 0 * * * * * * 4483 0 0 V 77 * * * * 3569 * * 1901 * 1834 * * * * * * * 1445 * * 77 0 * * * * * * 4483 0 0 T 78 * * * * * * * * * * * * 4723 * * 2281 403 * * * 78 0 * * * * * * 4483 0 0 E 79 * * 1304 1078 * * * * * * * 3044 * * * * * * * * 79 0 * * * * * * 4483 0 0 K 80 * * * 3624 * * 4158 5459 838 * * 4147 * 4561 3034 4382 6375 * * * 80 0 * * * * * * 4483 0 0 Q 81 4532 * * 3781 * * * * * * 4862 * * 301 * * * 4723 * * 81 0 * * * * * * 4483 0 0 F 82 * * * * 1726 * * * * * 5071 4723 * * * * * 4532 2734 1195 82 0 * * * * * * 4483 0 0 S 83 2449 * 3700 2865 * 3657 * * 4862 * * 3816 * 3251 4051 2165 * 5071 * * 83 0 * * * * * * 4483 0 0 R 84 * * 3524 4039 * 3793 * * 2696 * 3767 2333 * * 2132 3253 5590 * * * 84 0 * * * * * * 4483 0 0 M 85 3490 * * * * * * 2197 * * 837 * * 4657 * * 4396 4444 * * 85 92 4015 * 0 * * * 4422 1834 0 I 86 * * 4518 2576 5351 * 3911 2079 3425 2365 5131 * * 5404 5809 * * 4022 * 4568 86 0 * * * * * * 4388 0 0 Y 87 * 4613 * * 3756 * 4028 1830 * 2537 * 5273 * * 4001 * 3096 3836 * 3396 87 0 * * * * * * 4388 0 0 L 88 * * * * 2469 * * 2251 * 1192 * * * * * * * 3878 * 3268 88 0 * * * * * * 4388 0 0 H 89 * * * * * 3196 3970 4621 * 2758 * * * * 3750 2699 3981 2046 5273 3663 89 0 * * * * * * 4388 0 0 G 90 * * 5336 * * 178 * * 5116 * * 4612 * * * 5534 * * * * 90 24 5946 * 0 * * * 4388 1000 0 E 91 6334 * 5688 1220 * 4732 * * 2581 * * 3764 5974 5284 2932 3881 * 5649 * * 91 82 4169 * 845 1174 * * 4389 1507 0 Q 92 4474 * 5847 3815 * 4145 * 5261 1060 * * * 5632 3487 3767 3452 5044 * * * 92 0 * * * * * * 4469 0 0 D 93 * 4999 5502 2709 5270 * * 5658 3065 3638 * 4184 * 5337 3454 2434 3408 3353 * * 93 271 2546 * 0 * * * 4469 2222 0 N 94 4256 * 3472 4935 5387 5138 * * 3046 * * 2335 4999 2928 4156 3397 3892 3792 * * 94 38 5268 * 0 * * * 4469 1000 0 R 95 5031 * 3384 1426 * * * * 4696 4302 * 3800 2862 3406 4228 5482 4935 * * * 95 0 * * * * * * 4469 0 0 V 96 3341 * * 2128 * * * 2280 2792 * 5270 * 4397 4999 * * 3240 3571 * 5179 96 32 * 5529 * * * * 4469 0 0 A 97 3890 * 5172 3324 * * * 4281 2887 3201 5194 5303 3952 4907 3382 * 5098 3244 * 2962 97 0 * * * * 0 * 4474 0 1000 N 98 * * 3657 3631 * 5409 * 4448 2972 4806 * 1246 * 4950 * 5088 5010 3427 * * 98 0 * * * * * * 4366 0 0 S 99 3184 * 3510 3730 * 4448 * * 4184 * * 3541 3663 * * 1918 2348 * * * 99 0 * * * * * * 4366 0 0 D 100 3877 * 3121 3572 * * * * 4076 3833 5071 3697 1802 * 4409 3702 4186 5010 * * 100 0 * * * * * * 4366 0 0 E 101 * * 2920 1444 * 4982 * * 5474 * * 3420 3469 2701 5142 4289 5104 * * * 101 0 * * * * * * 4366 0 0 R 102 * * * 5013 * * * * 2757 4320 * 4054 4777 1332 1851 * * * * * 102 0 * * * * * * 4283 0 0 I 103 * * * * * * * 5180 * 487 * * * 4656 * * 3733 5303 * 3074 103 0 * * * * * * 4294 0 0 V 104 3393 * * 3918 * * * 1989 * 3202 4048 * * 4832 * * 3768 1693 * * 104 0 * * * * * * 4294 0 0 F 105 4346 * * * 2209 * * 1590 * 1456 * * * * * * * 4724 * * 105 0 * * * * * * 3952 0 0 L 106 * * * * 1025 * * 2232 * 1758 * * * * * * * * * * 106 0 * * * * * * 3941 0 0 G 107 * * * * * 0 * * * * * * * * * * * * * * 107 0 * * * * * * 1615 0 0 E 108 * * * 0 * * * * * * * * * * * * * * * * 108 0 * * 0 * * * 1174 0 0 //