HHsearch 1.5 NAME c5wsnD_ FAM FILE c5wsnD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5wsnD_.a3m DATE Sat May 20 08:18:14 2017 LENG 74 match states, 74 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4726 2.0109 SEQ >ss_dssp CCSSSCCCCCCCSCCSCCTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSTHHHHHHHHHHHHHSTTC >sa_dssp EEEEEDEDEDDEEDEEECEEDECCEDDEEDECDDDCEEDDDCCEEBDEEBEEDDEEEDDBEEDCEECCEDCBED >ss_pred CCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC >ss_conf 93235444477556520111005799999999766863804999999999997366126999999999834579 >Consensus SVxixxHxxxxLxxrxxxWlxxxxxxxxlqrvExWxxrNpgyaxxavxlxwllgxxxxqrviixiLlLlvxPAY >c5wsnD_ SVSVQTHGESSLVNKTETWLDSTKATRYLMKTENWIIRNPGYAFLAAVLGWMLGSNNGQRVVFTILLLLVAPAY >UniRef50_P05769(218-291:3434) Methyltransferase/RNA-directed RNA polymerase NS5 n=2839 Tax=Flavivirus RepID=POLG_MVEV5 E=3e-30 s/c=1.78 id=80% cov=101% SITVQTHGESTLVNKKDAWLDSTKATRYLTKTENWIIRNPGYALVAVVLGWMLGSNTGQKVIFTVLLLLVAPAY >UniRef50_B5KM05(201-274:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=9e-13 s/c=1.01 id=45% cov=101% SVAIAPHGNGGLSTRKDKWLAADASMLHLQKVERWMISNPGYAAVAVFLGYMLGTTTVQKAVLVILLLMVAPAY >UniRef50_Q1X881(211-284:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=3e-09 s/c=0.85 id=36% cov=101% AIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALLVLAVGPAY >UniRef50_Q7T918(222-295:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=2e-07 s/c=0.78 id=47% cov=101% SVALTNHVEETLNTRGERWAVDKIGKQQFEKIERWIIRNPLYALAVVGISYMLGSNVGQRIIICILLLLVAPAY >UniRef50_P33478(206-278:3396) Methyltransferase/RNA-directed RNA polymerase NS5 n=6644 Tax=root RepID=POLG_DEN1S E=4e-06 s/c=0.72 id=34% cov=100% SVALAPHVGLGLETRTETWMSSEGAWKQIQRVETWALRHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPS- >UniRef50_B9TRQ0(211-284:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=2e-21 s/c=1.39 id=48% cov=101% SVGISAHGSGGLAHKKTRWMSVDASMEHFQRTERWVLRNPGYALIAGLMGWMLGSNRTQKVMFIILLLLVIPAY >UniRef50_C3VP79(217-291:3435) Polyprotein n=26 Tax=Flaviviridae RepID=C3VP79_9FLAV E=2e-19 s/c=1.29 id=40% cov=101% SVALAPHGTGNLhTGEAPMWKSHTDASKYLQRVERWALRNPGYLGILVAIGWLLGKTTAQRVIYITLLVLIGPAY >UniRef50_Q04538(204-277:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=2e-19 s/c=1.31 id=24% cov=101% SVVIPTHAQKDMVGRGHAWLKGDNIRDHVTRVEGWMWKNKLLTAAIVALAWLMVDSWMARVTVILLALSLGPVY >UniRef50_P29838(207-279:776) Envelope protein E (Fragment) n=153 Tax=Flavivirus RepID=POLG_LANVY E=1e-18 s/c=1.29 id=20% cov=100% -VLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALVPAY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3038 * * * * * * * * * * * * * * 187 * * * * 1 0 * * * * * * 2932 0 0 V 2 * * * * * * * 2435 * * * * * * * * * 295 * * 2 0 * * * * * * 3039 0 0 S 3 1328 * 3170 * * 3442 * * * 3063 * * * * * 3631 3760 3007 * * 3 0 * * * * * * 3039 0 0 V 4 * * * * * * * 1249 * 1236 * * * * * * * 2694 * * 4 0 * * * * * * 3039 0 0 Q 5 1733 * * * * * * * * * * * 1494 2694 * 3442 3359 * * * 5 0 * * * * * * 3039 0 0 T 6 3442 * * * * * * * * * * 3359 1733 * * 3063 1359 * * * 6 0 * * * * * * 3039 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 3039 0 0 G 8 2035 * * 3170 * 1197 * * * * * * * * * * * 2260 * * 8 0 * * * * * * 3039 0 0 E 9 * * * 1989 * 3167 * * * * * 2352 * 2035 * 3442 3254 * * * 9 0 * * * * * * 3039 0 0 S 10 * * * 3359 * 1828 3170 * 3007 3167 * * * * 3063 2694 * * * * 10 0 * * * * * * 3039 0 0 S 11 * * 2035 * * 1325 * * * * * 3254 * * * 3631 2546 * * * 11 0 * * * * * * 3039 0 0 L 12 * * * * * * * * * 192 3007 * * * * * * * * * 12 160 3254 * 0 * * * 3039 1000 0 V 13 3442 * * 3167 * * * * 3170 * * 3359 * * * 3560 2155 1842 * * 13 0 * * * * * * 3039 0 0 N 14 * * * * * 1519 3442 * * * * 2694 * * * * 1305 * * * 14 0 * * * * * * 3039 0 0 K 15 * * * 3254 * * * * 2020 * * * * * 624 * * * * * 15 0 * * * * * * 3039 0 0 T 16 3254 * * * * 1550 * * 1997 * * * * 3170 * * 2381 * * * 16 0 * * * * * * 3039 0 0 E 17 * * 2657 1320 * * 2035 * * * * * 3254 * * * 3442 * * * 17 0 * * * * * * 3039 0 0 T 18 2335 * * * * * * * 2352 * 3254 * * 3063 2400 * 2381 * * * 18 0 * * * * * * 3039 0 0 W 19 * * * * * * * * * * * * * * * * * * 0 * 19 0 * * * * * * 3039 0 0 L 20 3359 * * * * * * * 3254 1049 1669 * * * * * * * * * 20 0 * * * * * * 3039 0 0 D 21 3560 * 2694 3063 * * * * 3007 * * * * * * 1698 3170 3359 * * 21 0 * * * * * * 3039 0 0 S 22 3560 * 3359 * * 1494 3254 * * * * * * * * 1911 * 3442 * * 22 0 * * * * * * 3039 0 0 T 23 * * 1731 2114 * * * * 3359 * * * * * 3170 * 1947 * * * 23 0 * * * * * * 3039 0 0 K 24 1754 * 3254 * * 3167 * 3359 2694 * 3170 3007 * * * * * * * * 24 0 * * * * * * 3039 0 0 A 25 1432 * * * * 2261 * 3007 * * * * * * * 2500 * 3063 * * 25 0 * * * * * * 3039 0 0 T 26 * * * 3170 * * * * 2203 * 2500 * * * 3007 3254 2694 * 3167 * 26 0 * * * * * * 3039 0 0 R 27 3063 * 3007 3442 * * * * 2210 3560 * * * 3359 1913 * * * * * 27 0 * * * * * * 3039 0 0 Y 28 * * * * * * 1249 * * * * * * 1644 * * * * * 1947 28 0 * * * * * * 3039 0 0 L 29 * * * * 2400 * * 3167 * 799 * * * * * * * 3007 * * 29 0 * * * * * * 3039 0 0 M 30 * * * 3359 * * * * * * 3631 * * 989 * * 1654 * * * 30 0 * * * * * * 3039 0 0 K 31 * * * * * * * * 1159 * * * * * 857 * * * * * 31 0 * * * * * * 3039 0 0 T 32 * * * * * * * 2261 * * * * * * * * 2020 876 * * 32 0 * * * * * * 3039 0 0 E 33 * * * 0 * * * * * * * * * * * * * * * * 33 0 * * * * * * 3039 0 0 N 34 * * * * * 2035 * * * * * 2694 * * 1029 * 3167 * * * 34 0 * * * * * * 3039 0 0 W 35 * * * * * * * * * * * * * * * * * * 0 * 35 0 * * * * * * 3039 0 0 I 36 2210 * * * * * * 1989 * 3170 2257 * * * * * * 2240 * * 36 0 * * * * * * 3039 0 0 I 37 * * * * * * * 1570 * 1698 * * * * * * * 3170 2035 * 37 0 * * * * * * 3039 0 0 R 38 * * * * * * * * 2035 * * * * * 575 3560 * * * * 38 0 * * * * * * 3039 0 0 N 39 * * * * * * 3167 * * * * 170 * * * * * * * * 39 0 * * * * * * 3039 0 0 P 40 * * * * * * * * 2035 * * * 404 * * * * * * * 40 0 * * * * * * 3039 0 0 G 41 * * * * 3170 869 * * * 1550 * * * * * * * * * * 41 0 * * * * * * 3039 0 0 Y 42 * * * * 1548 * * * * 3007 * * * * * * * * * 906 42 0 * * * * * * 3039 0 0 A 43 889 * * * * * * * * 3254 * * * * * * 1493 * * * 43 0 * * * * * * 3039 0 0 F 44 2257 * * * 3631 3254 * * * 1385 * * * * * * * 2169 * * 44 0 * * * * * * 3039 0 0 L 45 2172 * * * * * * 1698 * 3631 * * * * * 3063 3170 2657 * * 45 0 * * * * * * 3039 0 0 A 46 853 * * * * * * 3007 * 2155 * * * * * * * 3359 * * 46 0 * * * * * * 3039 0 0 A 47 3631 * * * * 3442 * * * 2169 * * * * * * * 725 * * 47 0 * * * * * * 3039 0 0 V 48 1555 * * * 2350 3359 * * * 3442 3063 * * * * * * 2694 * * 48 0 * * * * * * 3039 0 0 L 49 * * * * * * * 1674 * 1074 3442 * * * * * * 3063 * * 49 0 * * * * * * 3039 0 0 G 50 1100 * * * * 1197 * * * * * * * * * 3359 * * * * 50 0 * * * * * * 3039 0 0 W 51 * * * * * * 3167 * * * * * * * * * * * 748 1769 51 0 * * * * * * 3039 0 0 M 52 3167 * * * * * * * * 1121 1222 * * * * * * * * * 52 0 * * * * * * 3039 0 0 L 53 * * * * * * * 3167 * 906 2035 * * * * * * 3170 * * 53 0 * * * * * * 3039 0 0 G 54 * * * * * 404 * * * * * * * * * * * 2035 * * 54 0 * * * * * * 3039 0 0 S 55 * * 2035 * * * * * 3254 * * 3170 * * * 1540 2350 * * * 55 0 * * * * * * 3039 0 0 N 56 * * * * * 3063 * * * * * 1136 * * * 2085 2399 * * * 56 0 * * * * * * 3039 0 0 N 57 * * * * * * * 3167 * 3063 * 3631 * * 3442 * 1417 3359 3007 * 57 0 * * * * * * 3039 0 0 G 58 3254 * * * * 1989 * * * 3063 3007 * * * * * 1669 3560 * * 58 0 * * * * * * 3039 0 0 Q 59 3007 * * * * * * * * * * * 3063 404 * * * * * * 59 0 * * * * * * 3039 0 0 R 60 * * * * * * * * 1466 * * * * * 648 * * * * * 60 0 * * * * * * 3039 0 0 V 61 3560 * * * * 3167 * 2203 * * * * * * * * * 769 * * 61 0 * * * * * * 3039 0 0 V 62 * * * * * * * 1368 * 3063 3442 * * * * * 3007 1854 * * 62 0 * * * * * * 3039 0 0 F 63 * * * * 2020 * * 1186 * 3560 * * * * * * * 3007 * 3254 63 0 * * * * * * 3039 0 0 T 64 3170 3359 * * 3167 * * 1639 * * * * * * * * 2694 2290 * * 64 0 * * * * * * 3039 0 0 I 65 * * * * * * * 1101 * 2086 * * * * * * 3254 2370 * * 65 0 * * * * * * 3039 0 0 L 66 * * * * * * * * * 184 * * * * * * * 3063 * * 66 0 * * * * * * 3039 0 0 L 67 2035 * * * * * * * * 633 * * * * * * * 3170 * * 67 0 * * * * * * 3039 0 0 L 68 * * * * * * * * * 351 3167 * * * * * * 3254 * * 68 0 * * * * * * 3039 0 0 L 69 2116 * * * * * * * * 836 3560 * * * * 3007 * * * * 69 0 * * * * * * 3039 0 0 V 70 * * * * * * * 3254 * 2035 * * * * * * * 619 * * 70 0 * * * * * * 3039 0 0 A 71 1570 * * * * 1555 * 3442 * * * * * * * * 3167 3063 * * 71 0 * * * * * * 3039 0 0 P 72 * * * * * * * * * * * * 0 * * * * * * * 72 0 * * * * * * 3039 0 0 A 73 388 * * * * * * * * * * * * * * 3167 * 3007 * * 73 0 * * * * * * 3039 0 0 Y 74 * * * * * * * * * * * * * * * * * * * 0 74 0 * * 0 * * * 2940 0 0 //