HHsearch 1.5 NAME c5vliC_ FAM FILE c5vliC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5vliC_.a3m DATE Sat Sep 30 08:16:54 2017 LENG 39 match states, 39 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4807 3.3815 SEQ >ss_dssp CEEEEESSHHHHHHHHHHHHHTTCCEEEEECCCEEEEEC >sa_dssp EDECDCEDEECADDBBEDCDEEEDEBEDCEEEDBDACAE >ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEC >ss_conf 921000221101328889851242899998085177769 >Consensus cieqsfttlfacqtaaeiwrafgytvkimvdgncrlhvc >c5vliC_ CIEQSFTTLFACQTAAEIWRAFGYTVKIMVDGNCRLHVC # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * C 1 * 0 * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 E 3 * * * 0 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 Q 4 * * * * * * * * * * * * * 0 * * * * * * 4 0 * * * * * * 1000 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 1000 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1000 0 0 T 8 * * * * * * * * * * * * * * * * 0 * * * 8 0 * * * * * * 1000 0 0 L 9 * * * * * * * * * 0 * * * * * * * * * * 9 0 * * * * * * 1000 0 0 F 10 * * * * 0 * * * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 A 11 0 * * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 Q 13 * * * * * * * * * * * * * 0 * * * * * * 13 0 * * * * * * 1000 0 0 T 14 * * * * * * * * * * * * * * * * 0 * * * 14 0 * * * * * * 1000 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 A 16 0 * * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 E 17 * * * 0 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1000 0 0 I 18 * * * * * * * 0 * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 W 19 * * * * * * * * * * * * * * * * * * 0 * 19 0 * * * * * * 1000 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 1000 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1000 0 0 F 22 * * * * 0 * * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 Y 24 * * * * * * * * * * * * * * * * * * * 0 24 0 * * * * * * 1000 0 0 T 25 * * * * * * * * * * * * * * * * 0 * * * 25 0 * * * * * * 1000 0 0 V 26 * * * * * * * * * * * * * * * * * 0 * * 26 0 * * * * * * 1000 0 0 K 27 * * * * * * * * 0 * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 I 28 * * * * * * * 0 * * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 M 29 * * * * * * * * * * 0 * * * * * * * * * 29 0 * * * * * * 1000 0 0 V 30 * * * * * * * * * * * * * * * * * 0 * * 30 0 * * * * * * 1000 0 0 D 31 * * 0 * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1000 0 0 G 32 * * * * * 0 * * * * * * * * * * * * * * 32 0 * * * * * * 1000 0 0 N 33 * * * * * * * * * * * 0 * * * * * * * * 33 0 * * * * * * 1000 0 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 1000 0 0 R 35 * * * * * * * * * * * * * * 0 * * * * * 35 0 * * * * * * 1000 0 0 L 36 * * * * * * * * * 0 * * * * * * * * * * 36 0 * * * * * * 1000 0 0 H 37 * * * * * * 0 * * * * * * * * * * * * * 37 0 * * * * * * 1000 0 0 V 38 * * * * * * * * * * * * * * * * * 0 * * 38 0 * * * * * * 1000 0 0 C 39 * 0 * * * * * * * * * * * * * * * * * * 39 0 * * 0 * * * 1000 0 0 //