HHsearch 1.5 NAME c5vgzB_ FAM FILE c5vgzB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5vgzB_.a3m DATE Sat Aug 26 08:18:53 2017 LENG 73 match states, 73 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4748 2.5142 SEQ >ss_dssp CTTTTSGGGTSSSSCEEEEEEECCTTSBCEEECSSCCCCCCBCCTTCCSSTTCSSSEEEECSSSCCCCCCCCC >sa_dssp EEEEDECDEDDDECCDEADBDCDCEEDCCCBCDEECCEDECDDDEECDDEECEDEDDABBBEEECCCBBCEEE >ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEEHHCCCCHHHCCCCCEEEECCCCHHHHHHHCC >ss_conf 9027999973378802878987534884799956998598860113488775976244673673355764329 >Consensus xxxkxelxxlxxxpxxvgxvxexidxxxxIVkxsxGxxyxVxixsxiDxxxlkpgxxVaLxxxsxsivxVLxx >c5vgzB_ EEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMD >UniRef50_A6UQT3(59-126:407) Proteasome-activating nucleotidase n=12 Tax=Archaea RepID=PSMR_METVS E=9e-15 s/c=1.19 id=33% cov=95% ---KRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVL-- >UniRef50_B9NL17(70-139:183) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NL17_POPTR E=1e-13 s/c=1.11 id=30% cov=95% ---QEEVKRIQSVPLVSGQFMDMVDQNNGIVGSTTGSkNYYMSILSTINNwELLKASTFVALHGQSNALVDVL-- >UniRef50_P62333(41-111:389) 26S protease regulatory subunit S10B n=244 Tax=Eukaryota RepID=PRS10_HUMAN E=2e-16 s/c=1.23 id=22% cov=99% EKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYL-- >UniRef50_Q98S02(41-108:383) 26S proteasome SU n=3 Tax=Eukaryota RepID=Q98S02_GUITH E=2e-13 s/c=1.13 id=26% cov=95% ---KNEIFRFQSVPLIIGTFIEKIDDKYAIVSSSSGNYIMSRFISVINKSKFKTNTTVILHKFSNSILNTL-- >UniRef50_A8B3G7(40-108:390) 26S protease regulatory subunit 6B n=2 Tax=Giardia intestinalis RepID=A8B3G7_GIALA E=5e-10 s/c=0.95 id=32% cov=82% ------------TPLAIGQFVEFADEDYAVVQASTNfGNSLVRISSSVDRLKLKPMSTLALAKNSLALLKVL-- >UniRef50_B5ACH6(48-116:332) 26S proteasome regulatory subunit 6B (Fragment) n=1 Tax=Trichophyton verrucosum RepID=B5ACH6_TRIVC E=6e-10 s/c=0.95 id=23% cov=96% ---KKKLNEYNVLPRTAANSKKQSTKNTGIVKSSTGSNDNIKIRSTLDRELEKPASSVARKRNSKSLVDILT- >UniRef50_Q01939(59-128:405) 26S protease regulatory subunit 8 homolog n=38 Tax=Eukaryota RepID=PRS8_YEAST E=8e-07 s/c=0.78 id=17% cov=95% ---KDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVL-- >UniRef50_A8BAB3(40-110:401) 26S protease regulatory subunit 7 n=2 Tax=Giardia intestinalis RepID=A8BAB3_GIALA E=2e-07 s/c=0.81 id=16% cov=77% ----------------LATVIQVIDADNILIRLLSGPRYLVNRRSGINPRYIKSGTRVSVSLSTYSIMHIL-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 883 * * * * 1810 * * * * 2535 * * * * * * 1 0 * * * * * * 3138 0 0 E 2 * * 2470 1074 * * * * 1537 * * * * * * * * * * * 2 0 * * * * * * 3165 0 0 E 3 * * 4005 749 * * * * * * * * * 2926 * 2243 * * * * 3 0 * * * * * * 3165 0 0 R 4 * * * 2299 * * * * 1298 * * * * 3330 1783 * * * * * 4 0 * * * * * * 4623 0 0 S 5 * * 3962 1482 * 5574 * * 3155 * * 3111 * 4056 4828 2098 * * * * 5 0 * * * * * * 4695 0 0 K 6 * * 3593 1127 * * * * 2366 4402 * * * * 3286 * 3117 * * * 6 0 * * * * * * 4695 0 0 V 7 * * * * * 4105 * 1939 * 1237 * * * * * 3654 * 2493 * * 7 0 * * * * * * 4695 0 0 D 8 4056 * 2271 4928 4408 4105 * * 2214 * * 3155 * 2729 3864 4402 * * * * 8 0 * * * * * * 4695 0 0 D 9 2857 * 3505 3269 * * * * 2810 2991 * 3626 * 3056 2319 * * * * * 9 0 * * * * * * 4695 0 0 L 10 * * * * 4446 * * 2156 * 872 3854 * * * * * 4116 * * 4141 10 0 * * * * * * 4714 0 0 R 11 * * * * * * 3540 * 3601 * * 3306 * 1526 1528 4784 * * * * 11 0 * * * * * * 4714 0 0 G 12 * * * 2743 * 1774 * 4850 * * * * * 4492 * 1616 3380 4141 * * 12 0 * * * * * * 4714 0 0 T 13 5415 * * 4468 * * * 3198 5690 4214 * * 2192 4237 * 3491 2467 2269 * * 13 0 * * * * * * 4812 0 0 P 14 * * * * * 2015 * * * * * * 599 * * 4847 4122 * * * 14 0 * * * * * * 4812 0 0 M 15 * 4847 * * 4543 * * 3137 * 1483 2956 * * 2954 4214 3218 * * * 4975 15 0 * * * * * * 4812 0 0 S 16 3290 * * * * 4649 * 2240 * 4543 * * * * * 2409 3167 2349 * 3218 16 0 * * * * * * 4812 0 0 V 17 4378 * * * * * * 1606 * 3102 * * * * * 5119 4662 1189 * * 17 0 * * * * * * 4855 0 0 G 18 1904 * * * * 538 * * * * * 4503 * * * * * * * * 18 0 * * * * * * 4855 0 0 T 19 * * 4687 2152 4972 * 5675 * * 4662 * 3229 * 2359 4382 4602 2321 4197 * * 19 0 * * * * * * 4855 0 0 L 20 * * * * 2200 * * 3143 * 2150 * * * * * 4378 * 1338 * * 20 0 * * * * * * 4855 0 0 E 21 * * 4768 2739 * * 4382 2223 4378 2144 5119 * * 3533 * 5491 * 2842 * * 21 0 * * * * * * 4855 0 0 E 22 * * 2763 1132 * * * * 1908 * * 5523 * 4628 3880 * * * * * 22 0 * * * * * * 4855 0 0 I 23 2982 5303 * * 4880 * * 2853 2829 3627 3287 * 5512 3450 4061 * * 2488 * * 23 71 4382 * 0 * * * 4855 1000 0 I 24 3679 * * * * * * 1617 * 2679 2880 * * * * 4378 * 1967 * * 24 0 * * * * * * 4855 0 0 D 25 4905 * 611 * * 3082 * * * * * 5155 * * * 3755 3450 * * * 25 0 * * * * * * 4855 0 0 D 26 3636 * 2259 1595 * * * * 2363 * * 3096 * 4519 * * 5346 * * * 26 0 * * * * * * 4855 0 0 N 27 * * 2878 2857 * 4905 4768 * 2346 5675 * 1700 * * 5155 3600 5549 * * * 27 47 * 4972 * * * * 4855 0 0 H 28 * * * * 4134 * 2173 * 1473 * * 2862 * * 3857 * 3659 * * 3729 28 0 * * * * 0 * 4816 0 1000 A 29 1311 * * * 3604 2670 * 4628 * 4197 4905 * * * * * * 2462 * 4387 29 0 * * * * * * 4855 0 0 I 30 * * * * * * * 861 * 2210 * * * * * * * 2101 * * 30 0 * * * * * * 4855 0 0 V 31 * * * * * * * 3142 * * * * * * * * * 173 * * 31 0 * * * * * * 4855 0 0 S 32 * * * * * 4519 * * 1083 * * * * 4880 2819 2158 4768 4382 * * 32 0 * * * * * * 4855 0 0 T 33 2850 * * * * * * 4382 4197 3044 * 4972 * * * 1475 3408 2718 * * 33 0 * * * * * * 4855 0 0 S 34 5830 * * 4382 * 4768 3287 * * 4628 * * 3675 5373 * 1070 2507 * * * 34 0 * * * * * * 4855 0 0 V 35 5307 * 4768 4197 * 3889 * 5549 * 3947 * 3847 2982 5079 * 2975 1563 4702 * * 35 0 * * * * * * 4855 0 0 G 36 * * * 2679 * 499 * * * * * 3610 * * * * * * * 4197 36 83 4166 * 0 * * * 4855 1494 0 S 37 * 4768 * * * 2395 * * 3843 * * 4646 1689 * * 1823 3823 * * * 37 115 3704 * 0 * * * 4855 1675 0 E 38 * * * 1964 * * 5303 * 2399 * * 1992 * * 2926 4197 5675 4972 * 4646 38 54 4768 * 1000 1000 * * 4855 1000 0 H 39 * * 4378 * 2516 * 5749 3404 * * 4768 * * * * 3679 * * 4382 996 39 0 * * * * * * 4855 0 0 Y 40 * 4768 * * 4503 * * 3990 * 2463 4646 4378 * * * * * 1962 * 1599 40 0 * * * * * * 4855 0 0 V 41 * * * * * * * 3380 * * 5119 * * * * 4646 4197 357 * * 41 0 * * * * * * 4855 0 0 S 42 5361 5476 2590 * * 3308 * * 2919 * * 2818 4382 * 2378 2736 * * 5523 * 42 0 * * * * * * 4855 0 0 I 43 4197 2943 * * 4646 * * 1568 * 3792 * * * * 4628 4092 * 1905 * * 43 0 * * * * * * 4855 0 0 L 44 3605 4662 3683 3870 * * * 4646 5476 1722 4964 4972 * * 2669 2783 * * * * 44 0 * * * * * * 4855 0 0 S 45 5079 * 5346 * * 4768 * * 3293 * * 4687 5307 4025 3732 776 * 5476 * * 45 0 * * * * * * 4855 0 0 F 46 * 5303 5373 * 2016 2824 * 3911 * * * 3678 * 5713 3823 3382 2382 4646 * * 46 0 * * * * * * 4855 0 0 V 47 * * * * * * * 1413 * 2363 * 4503 * * * * * 1373 * * 47 0 * * * * * * 4855 0 0 D 48 4503 * 598 5155 * * * * * * * 1904 * * * * * * * * 48 0 * * * * * * 4855 0 0 K 49 * 4687 * 4972 * * * 2921 2158 * * 5119 3415 5754 1678 4905 * 4423 * 4662 49 42 5119 * 0 * * * 4855 1000 0 D 50 5361 * 1897 2306 * 4028 * * 2978 4880 * 3600 * * 3836 3155 5807 * * * 50 0 * * * * * * 4855 0 0 L 51 5079 * 3117 4905 * * * 4687 2433 1198 * * * 4065 4662 5491 * * * 4628 51 0 * * * * * * 4855 0 0 L 52 * * * 4378 4646 * * 2271 * 817 * * 4503 * * 5523 * 3813 * * 52 0 * * * * * * 4855 0 0 E 53 * * * 3180 * * * 4972 1101 * * 4687 * 4197 4382 * 3001 4247 * 3778 53 0 * * * * * * 4855 0 0 P 54 3740 * * * * * * 3516 * * * 4687 681 5303 * 3554 4646 5346 * * 54 0 * * * * * * 4855 0 0 G 55 4378 * * * * 1088 * * * * 4880 2215 * * * 2268 5361 * * * 55 0 * * * * * * 4855 0 0 C 56 1433 3061 4687 4662 * * * * 5346 * * * * 4218 * 3116 2072 * * * 56 0 * * * * * * 4855 0 0 S 57 4602 * * * 5119 * * * 4905 3287 * 3629 * * 1280 2135 3758 * * * 57 0 * * * * * * 4855 0 0 V 58 * 5307 * * * * * 4133 4503 4369 * * * * * * * 277 * * 58 0 * * * * * * 4855 0 0 L 59 814 4199 * * * * 4149 4661 * 3276 4335 * * 4683 * 4650 4346 * * * 59 73 4335 * 2585 263 * * 4865 1000 0 L 60 * * * * * * * 4683 * 230 5664 * * * 4348 * * 4650 * * 60 0 * * * * * * 4865 0 0 N 61 4827 * 2948 * * * 1926 * 2965 3881 4149 2536 * * 3218 4650 * * * * 61 0 * * * * * * 4865 0 0 H 62 5504 * * 4149 * 3950 3268 * 2899 4017 3925 2769 4708 3097 3569 3646 * 5294 * * 62 0 * * * * * * 4865 0 0 K 63 * * 2142 5510 4661 * 3102 * 2814 * * 3568 * 3131 4795 3271 3925 4335 * * 63 0 * * * * * * 4865 0 0 V 64 4177 * * * * * * * * * * 3804 4294 * * 830 2082 5407 * * 64 0 * * * * * * 4837 0 0 H 65 * * * * * * 3034 4302 4344 1508 * 2908 * * * 3765 * 5268 * 2369 65 81 4191 * 1000 1000 * * 4778 1000 0 A 66 1407 * * * * * * 4191 * * 5134 * * * * 1585 2458 5368 * * 66 0 * * * * * * 4778 0 0 V 67 * * * * * * * 1402 * 1553 * * * * * * * 1832 * * 67 0 * * * * * * 4618 0 0 I 68 * 4891 * * * * 3012 2873 * 3516 2330 * * * * * * 1253 * * 68 0 * * * * * * 4631 0 0 G 69 * * 2977 2719 * 1851 4444 * 1865 5311 * 4442 * * 4257 * * * * * 69 0 * * * * * * 4631 0 0 V 70 * * * * * * * 1842 * 4960 * * * * * * 3600 785 * 5260 70 0 * * * * * * 4574 0 0 L 71 * * * * * * * 4277 * 76 * * * * * * * * * * 71 0 * * * * * * 4520 0 0 M 72 2560 * * * * * 2083 * * * 2696 * * * * * 1184 * * * 72 0 * * * * * * 2340 0 0 D 73 * * 0 * * * * * * * * * * * * * * * * * 73 0 * * 0 * * * 1817 0 0 //