HHsearch 1.5 NAME c5vbdA_ FAM FILE c5vbdA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5vbdA_.a3m DATE Sat Apr 29 08:16:01 2017 LENG 85 match states, 85 columns in multiple alignment FILT 17 out of 21 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.3 EVD 0.4370 0.8722 SEQ >ss_dssp -CCCCCCCCCEEECCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHHTEEEEEEETTEECCGGGTTSCGGGSSCCTTCEEEEEEEEC >sa_dssp -EEEEDEDDCDDDEDEEEDECEDEEEDEECCCEEDDEEDDEDCEEECDECDCBEEEDCDEEDEEDEDEEDECEDDCEBCADECDE >ss_pred CCCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCEECHHHCCCEEEECCCCCCEEEEEEEECC >ss_conf 9667714699999638836999962751589999876312678653168997655030735313241005856634899997419 >Consensus xaxrGkxxxLxirfxxedxxixtHsNEtixSvRrxilxxikxxxxxxkidLfxNxelLxxxxDxkLlxqlxxkDxxxitvKLxxv >c5vbdA_ GAFRGKHLSFVVRFPNDDLEVWSHTNDTIGSVRRCILNRIKANVAHTKIELFVGGELIDPADDRKLIGQLNLKDKSLITAKLTQI >UniRef50_UPI000180B888(931-1019:2595) PREDICTED: similar to ubiquitin specific peptidase 9 n=1 Tax=Ciona intestinalis RepID=UPI000180B888 E=5e-09 s/c=0.70 id=40% cov=99% -AARGENIILIIRFAaqgrqTEDFEILTHANASLASVRKQVLSHFKLSSSGVmKAELYVNGEQLGTELDRKLIGSLSLKTRSTISLKLVQ- >UniRef50_B4QTA0(976-1064:2736) Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Sophophora RepID=B4QTA0_DROSI E=2e-23 s/c=1.22 id=37% cov=98% ---RGKNTILYIRFQNpgrsiDDMEIVTHSNETMAAFKRSLLKRIKGtSTTNIKVDlLYANGEMIGVSDEINPLYQYTIRDKMNLTAKLTPV >UniRef50_Q9UPU5(953-1033:2620) Ubiquitin carboxyl-terminal hydrolase 24 n=43 Tax=Deuterostomia RepID=UBP24_HUMAN E=8e-19 s/c=1.17 id=34% cov=94% ASFHGHLLTLNVTYEStkDTFTVEAHSNETIGSVRWKIAKQLCSPVDNIQI--FTNDSLLTVNKDQKLLHQLGFSDEQILTVK---- >UniRef50_UPI000192781D(861-935:2334) PREDICTED: similar to ubiquitin specific peptidase 9 n=1 Tax=Hydra magnipapillata RepID=UPI000192781D E=5e-18 s/c=1.23 id=48% cov=81% ---RGKQICLYVRFPQqnrqiEDFEVWSHSNESIASLRR----RIYLDICY-------NNDVLNPTDDRKLISDLPIKDRGVFTIKL--- >UniRef50_B3S5E7(789-840:2373) Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trichoplax adhaerens RepID=B3S5E7_TRIAD E=3e-10 s/c=1.27 id=35% cov=61% ---------------------------------RTILPHGRLRSCgNNRTDLYVNNEILNPADDNKLVCDMPIRDRSIIYAKVNQ- >UniRef50_C3YCE1(906-989:2450) Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Branchiostoma floridae RepID=C3YCE1_BRAFL E=4e-09 s/c=0.75 id=25% cov=98% AAFRGQPLSLHISCETSNriFDIKGHSNERLGSIRHKIAVEVNHPPDYVQIA--VNERTLLWGKDQKLLHQLSFEDSMTLSVKMLP- >UniRef50_UPI0001925AFD(328-416:2203) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925AFD E=2e-06 s/c=0.60 id=26% cov=80% ------------------FVLLSHSNERISSVRQKVVTKIKLlieqKISAEQIQIYYNDQLLLESKDHMLLKQLLFKQPFCFSIKLGPV >UniRef50_A7RVY4(863-943:2450) Predicted protein (Fragment) n=2 Tax=Nematostella vectensis RepID=A7RVY4_NEMVE E=7e-06 s/c=0.64 id=30% cov=75% ----------------QNLSLQCHSNENLRSVRHRIAA--KLNVSAEQIQIFNNEKLLMSSKDQKLLYQLDFQEDQQVFVK---- >UniRef50_B3S0Y5(484-563:2077) Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trichoplax adhaerens RepID=B3S0Y5_TRIAD E=0.0001 s/c=0.60 id=25% cov=61% -----------------EFTVEVFTNETLYSLRSKLASKLNYSIDHIQ--LIYQERLLNTTKDHKLLQHL--------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 576 * * * * 1603 * * * * * * * * * * * * * * 1 0 * * * * * * 2008 0 0 A 2 352 * * * * * * * * * * * * * * 2206 * * * * 2 0 * * * * * * 2673 0 0 F 3 2767 3312 * * 959 * 3289 * * * * * * * * 2882 * * * * 3 0 * * * * * * 2673 0 0 R 4 * * * * * * 3540 * * * * 3490 * * 277 * * * * * 4 0 * * * * * * 2870 0 0 G 5 * * * * * 0 * * * * * * * * * * * * * * 5 0 * * * * * * 2870 0 0 K 6 * * * 3143 * * 2515 * 748 * * * * 3100 * * * * * * 6 0 * * * * * * 2870 0 0 H 7 * * * * * * 1577 * * 3600 * 2061 2336 3738 * * * * * 3843 7 0 * * * * * * 2950 0 0 L 8 * * * 3601 * * * 1996 * 1382 * * * * * * 2904 2742 * * 8 0 * * * * * * 2950 0 0 S 9 * 3738 * * * 3803 * 2496 * * * 2717 * * * 1487 2578 * * * 9 0 * * * * * * 2950 0 0 F 10 * * * * 2859 * * * * 214 * * * * * * * * * * 10 0 * * * * * * 2950 0 0 V 11 * * * * * * 2336 1670 * * * 3600 * * * 3843 3803 4173 * 2261 11 0 * * * * * * 2950 0 0 V 12 * * * * * 3601 * 979 * * * * * * * * * 1286 * * 12 0 * * * * * * 2950 0 0 R 13 * * * * * * * * * * * * * * 475 3145 2578 * * * 13 124 * 3601 * * * * 2950 0 0 F 14 * 3100 * * 497 * * * * * * * * * * * * * * 2515 14 0 * * * * 0 * 2870 0 1000 P 15 3237 * * 1834 * * * * * * * * 1609 1807 * * * * * * 15 162 3237 * 2322 322 * * 2950 1000 0 N 16 * * * * * * * * * 3601 * 1379 * 3738 * 2064 2191 * * * 16 1486 637 * 2071 392 * * 2950 2531 0 D 17 * * 1411 1197 * * * * * * * * * 3436 * 3390 * * * * 17 0 * * * * * * 3170 0 0 D 18 * * 819 3023 * * * * * * * 2428 * * * * 3010 * * * 18 127 3571 * 1000 1000 * * 3236 1000 0 L 19 * * * * 1072 * * * * 1116 3982 * * * * * * * * * 19 0 * * * * * * 3348 0 0 E 20 * * 2496 1251 * * * * * * 4184 * * * * 3563 2466 3611 * * 20 0 * * * * * * 3348 0 0 V 21 * * * * * * * 1365 * 1814 * * * * * * * 1610 * * 21 0 * * * * * * 3348 0 0 W 22 * * * 2466 * * * 3973 3761 2585 * * * 3563 * * * 2531 1958 * 22 0 * * * * * * 3348 0 0 S 23 4185 3563 * * * 3761 * * * * * * * * * 1829 1389 3020 * * 23 0 * * * * * * 3348 0 0 H 24 * * * * 3928 * 98 * * * * * * * * * * * * * 24 0 * * * * * * 3348 0 0 T 25 3560 * * * * * * * * * * * * * * 779 1588 * * * 25 0 * * * * * * 3348 0 0 N 26 * * * * * * * * * * * 0 * * * * * * * * 26 0 * * * * * * 3348 0 0 D 27 3560 * 2266 500 * * * * * * * * * * * * * * * * 27 0 * * * * * * 3348 0 0 T 28 * * * * * * * * * * * 3563 * * 2684 2847 688 * * * 28 0 * * * * * * 3348 0 0 I 29 * * * * * * * 1121 * 1448 3982 * * * * * * 3181 * * 29 0 * * * * * * 3348 0 0 G 30 1961 3973 * * 4184 1350 * * * * * * * * 3563 3611 * * * 3928 30 0 * * * * * * 3348 0 0 S 31 2526 * * * * * * * * * * * * * * 275 * * * * 31 0 * * * * * * 3348 0 0 V 32 * * * * 2079 * * 2383 * 2511 * * * * * * * 1336 * * 32 0 * * * * * * 3348 0 0 R 33 * * * * * * * * 2079 * * * * * 390 * * * * * 33 0 * * * * * * 3348 0 0 R 34 * * * * * * 2737 * 3662 * * * * 3643 937 4008 * * 3231 * 34 69 * 4424 * * * * 3448 0 0 C 35 * 3515 * * * * 4228 * 1572 * * 3225 * 2865 3617 2987 3820 * * * 35 0 * * * * * 0 3433 0 1000 I 36 * * * * * * * 911 * 1743 * * * * * * * 2560 * * 36 0 * * * * * 0 3433 0 1000 L 37 1594 * * * * * * * * 899 * * * * * * * 2915 * * 37 0 * * * * * 0 3433 0 1000 N 38 3617 * * 4088 * * * * 1807 * * 3515 3820 * * 2300 2836 3786 * * 38 123 * 3617 * * 0 * 3433 0 1000 R 39 * * * 3669 * * 2232 * 1870 * * * * 4137 1404 * * * * * 39 0 * * * * * 0 3322 0 1000 I 40 * * * * 3567 3904 * 1069 * 2439 * * * * * * * 2412 * * 40 0 * * * * 0 * 3322 0 1000 K 41 * 4298 * * * * * * 618 * * 2924 * * 3977 4166 * * * 4424 41 0 * * * * * * 3448 0 0 A 42 2420 4166 * * * 3157 3845 * * 1516 * * 4014 * * 4298 * 4282 * 4008 42 308 2380 * 1183 837 * * 3448 1774 0 N 43 * * 4424 * * * * * 3643 * * 1909 2505 * 3977 1666 4254 * * * 43 0 * * * * * * 3448 0 0 V 44 * * * * * * * 2405 * * * 3293 3845 * * 2811 2143 1885 * * 44 0 * * * * * * 3448 0 0 A 45 2896 3184 2069 * * * * 4282 * * * 4014 * * * 2062 2604 * * * 45 95 3977 * 0 * * * 3448 1000 0 H 46 2639 * * * * 3662 2267 * * * * 1196 * * * * * * * 3106 46 69 * 4424 * * * * 3448 0 0 T 47 * * * 2572 * * * 2101 4445 4209 3072 3820 * * * * 3397 2223 * * 47 125 3593 * 0 * * 0 3433 1000 1000 K 48 * * * * * * * * 968 * * * * 1259 3820 * * * * * 48 98 * 3928 * * * 0 3433 0 1000 I 49 3514 * * * * * * 596 * 4109 * * * * * * 3765 3064 * * 49 187 * 3039 * * * 0 3352 0 1431 E 50 3224 * 1037 2303 * * * * * * * * * 2301 * * * * * * 50 281 3838 3224 0 * 1754 507 3201 1000 1894 L 51 * * * * * * * 2199 * 498 3750 * * * * * * * * * 51 0 * * * * 1148 866 3212 0 1950 F 52 * * * * 869 * * 3779 * * * * * * * * * * * 1398 52 285 2479 * 0 * 841 1179 3340 1475 1548 V 53 3053 3076 * * * * * 4200 * * * 3617 * * * * 3243 1446 * 2714 53 0 * * * * 0 * 3433 0 1000 G 54 * * * * * 3578 * * * * * 227 * 4008 * * * * * * 54 0 * * * * * * 3448 0 0 G 55 4282 * 2422 2237 * 1185 * * * * * 3184 * * * * * * * * 55 0 * * * * * * 3448 0 0 E 56 * * 3205 1021 * * * * 3636 * * * * 3643 2924 3231 * * * * 56 0 * * * * * * 3448 0 0 L 57 * * * * * * * 3977 * 802 3157 * * 3662 * * 3845 3289 * * 57 0 * * * * * * 3448 0 0 I 58 * * * * * * * 1689 * 536 * * * * * * * * * * 58 0 * * * * * * 3448 0 0 D 59 * * 2428 2591 * 2842 * * * 2740 3636 2538 * * * * 3231 * * * 59 0 * * * * * * 3448 0 0 P 60 * * * 3643 * * * 3129 * * 4166 * 1990 * * 3004 2825 2618 3845 * 60 0 * * * * * * 3448 0 0 A 61 2286 * * 3021 * 3845 4254 * * * * 3231 * * * 1875 3201 4014 * * 61 0 * * * * * * 3448 0 0 D 62 * * 1119 4014 * * * * 1543 3662 * * * * 4166 * * * * * 62 0 * * * * * * 3448 0 0 D 63 * * 172 3157 * * * * * * * * * * * * * * * * 63 0 * * * * * * 3448 0 0 R 64 * * * * * * 2293 3157 4282 * * 3977 * 1963 1679 * * * * * 64 0 * * * * * * 3448 0 0 K 65 * * * * * * 4014 * 528 * 3643 3157 * * * * * * * 4254 65 0 * * * * * * 3448 0 0 L 66 * * * * * * * * * 370 * * 2143 * * * * * * * 66 0 * * * * * * 3448 0 0 I 67 * * * * * * * 1944 * 678 * * * * * * * 3122 * * 67 0 * * * * * * 3448 0 0 G 68 * 3977 * * * 2619 3054 * 3643 * * * * 4008 * 1650 * * * 2377 68 0 * * * * * * 3448 0 0 Q 69 * * 3184 * * * 3126 * * * * * * 656 * 2828 * * * * 69 0 * * * * * * 3448 0 0 L 70 * * * * * * * * * 601 3977 * * * * * * 4303 * 2143 70 0 * * * * * * 3448 0 0 N 71 * * 3571 * * 3110 * * * 3540 * 2232 2542 4221 * 2651 3099 * * * 71 0 * * * * * * 3376 0 0 L 72 * * * * 1466 * * 1284 * 2136 * * * * * * * * * * 72 0 * * * * * * 3376 0 0 K 73 * * * 3719 * * * * 1449 * * * * 3571 1482 3110 * * * * 73 0 * * * * * * 3376 0 0 D 74 * * 422 3571 * * * * * * * * * 3540 * * 3586 * * * 74 0 * * * * * * 3376 0 0 K 75 * * 3571 3110 * * * * 1384 * * * 3540 * 1972 3719 * * * * 75 0 * * * * * * 3376 0 0 S 76 * * * * 3540 4300 * * * * 2010 * * 2322 * 1756 3073 * * * 76 0 * * * * * * 3376 0 0 L 77 * 3540 * * * * * 2515 * 1908 * 3991 * 3571 * 4059 2651 3233 * * 77 0 * * * * * * 3376 0 0 I 78 * * * * 2870 * * 1269 * 1457 * * * * * * * 3571 * * 78 0 * * * * * * 3376 0 0 T 79 * * * * 3571 * * * * * * * * * * 1733 863 * * 3937 79 0 * * * * * * 3376 0 0 A 80 1389 * * * * * * 2870 * 3586 * * * * * * * 1329 * * 80 0 * * * * * * 3376 0 0 K 81 * * * * * * * * 0 * * * * * * * * * * * 81 0 * * * * * * 3376 0 0 L 82 * * * * * * * * * 323 3059 * * * * * * 3628 * * 82 0 * * * * * * 3086 0 0 T 83 * 2811 * * * 2960 * * * 2988 * 3455 * * * * 1295 3263 * * 83 0 * * * * * * 3060 0 0 Q 84 * * * * * * * * * * * * 875 1137 * * * * * * 84 0 * * * * * * 3060 0 0 I 85 * * * * * * * 2169 * 2743 * * * * * * * 671 * * 85 0 * * 0 * * * 2375 0 0 //