HHsearch 1.5 NAME c5u3mA_ FAM FILE c5u3mA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5u3mA_.a3m DATE Thu Feb 23 10:08:04 2017 LENG 26 match states, 26 columns in multiple alignment FILT 6 out of 10 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.5158 3.3022 SEQ >ss_dssp CCCCTTCCCCCHHHHHHHHHHHHCC- >sa_dssp EEEDEEEEEEEEDCEDDEEEEEEDE- >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 90588887752999998999886159 >Consensus keldkwaslwnwfditxwlwyikkkx >c5u3mA_ KELDKWASLWNWFDITNWLWYIRKKX >UniRef50_Q1A261(679-700:880) Transmembrane protein gp41 n=32471 Tax=Lentivirus RepID=ENV_SIVMB E=8e-06 s/c=2.35 id=87% cov=88% -ELDKWASLWNWFDITSWLWYIK--- >UniRef50_Q9IDV2(634-655:836) Transmembrane protein gp41 n=2955 Tax=Primate lentivirus group RepID=ENV_HV1YB E=9e-05 s/c=2.19 id=83% cov=88% -ELDQWASLWNWFDITKWLWYIK--- >UniRef50_B2YPH8(513-534:707) Envelope glycoprotein gp160 n=245 Tax=Human immunodeficiency virus 1 RepID=B2YPH8_9HIV1 E=0.0001 s/c=2.15 id=87% cov=88% -ELDKWASLWNWFNITNWLWYIK--- >UniRef50_O12008(660-681:854) Envelope glycoprotein gp160 n=1 Tax=Simian immunodeficiency virus RepID=O12008_SIVCZ E=0.0002 s/c=2.12 id=83% cov=88% -ELDKWSSLWNWFDITQWLWYIK--- >UniRef50_Q77377(662-683:863) Transmembrane protein gp41 n=1156 Tax=Primate lentivirus group RepID=ENV_HV1AN E=0.0008 s/c=2.05 id=74% cov=88% -ELDEWASIWNWLDITKWLWYIK--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1229 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1229 0 0 D 4 * * 0 * * * * * * * * * * * * * * * * * 4 0 * * * * * * 1229 0 0 K 5 * * * 2369 * * * * 623 * * * * 2669 * * * * * * 5 0 * * * * * * 1229 0 0 W 6 * * * * * * * * * * * * * * * * * * 0 * 6 0 * * * * * * 1229 0 0 A 7 268 * * * * * * * * * * * * * * 2559 * * * * 7 0 * * * * * * 1229 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1229 0 0 L 9 * * * * * * * 2369 * 310 * * * * * * * * * * 9 0 * * * * * * 1229 0 0 W 10 * * * * * * * * * * * * * * * * * * 0 * 10 0 * * * * * * 1229 0 0 N 11 * * * * * * * * * * * 0 * * * * * * * * 11 0 * * * * * * 1229 0 0 W 12 * * * * * * * * * * * * * * * * * * 0 * 12 0 * * * * * * 1229 0 0 F 13 * * * * 310 * * * * 2369 * * * * * * * * * * 13 0 * * * * * * 1229 0 0 D 14 * * 258 * * * * * * * * 2608 * * * * * * * * 14 0 * * * * * * 1229 0 0 I 15 * * * * * * * 0 * * * * * * * * * * * * 15 0 * * * * * * 1229 0 0 T 16 * * * * * * * * * * * * * * * * 0 * * * 16 0 * * * * * * 1229 0 0 N 17 * * * * * * * * 1511 * * 1608 * 2559 * 2722 * * * * 17 0 * * * * * * 1229 0 0 W 18 * * * * * * * * * * * * * * * * * * 0 * 18 0 * * * * * * 1229 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 1229 0 0 W 20 * * * * * * * * * * * * * * * * * * 0 * 20 0 * * * * * * 1229 0 0 Y 21 * * * * * * * * * * * * * * * * * * * 0 21 0 * * * * * * 1229 0 0 I 22 * * * * * * * 0 * * * * * * * * * * * * 22 0 * * * * * * 1229 0 0 R 23 * * * * * * * * 258 * * * * * 2608 * * * * * 23 0 * * * * * * 1229 0 0 K 24 * * * * * * * * 0 * * * * * * * * * * * 24 0 * * * * * * 1000 0 0 K 25 * * * * * * * * 0 * * * * * * * * * * * 25 0 * * * * * * 1000 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //