HHsearch 1.5 NAME c5u3kP_ FAM FILE c5u3kP_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5u3kP_.a3m DATE Thu Feb 23 10:09:46 2017 LENG 26 match states, 26 columns in multiple alignment FILT 5 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.5041 2.5725 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC >ss_conf 95014388887799999863102579 >Consensus waslwnwfditxwlwyikkkxxxxxx >c5u3kP_ WASLWNWFDITNWLWYIRKKXXXXXX >UniRef50_D2XT72(711-728:901) Envelope glycoprotein (Fragment) n=1 Tax=Human immunodeficiency virus 1 RepID=D2XT72_9HIV1 E=5e-05 s/c=2.71 id=89% cov=73% WASLWNWFDITNWLWYIK-------- >UniRef50_Q1A261(683-700:880) Transmembrane protein gp41 n=32471 Tax=Lentivirus RepID=ENV_SIVMB E=8e-05 s/c=2.67 id=84% cov=73% WASLWNWFDITSWLWYIK-------- >UniRef50_P17281(657-674:854) Transmembrane protein gp41 n=673 Tax=Primate lentivirus group RepID=ENV_SIVCZ E=0.0003 s/c=2.58 id=84% cov=73% WASLWNWFDITKWLWYIK-------- >UniRef50_B2YPH8(517-534:707) Envelope glycoprotein gp160 n=245 Tax=Human immunodeficiency virus 1 RepID=B2YPH8_9HIV1 E=0.0006 s/c=2.52 id=84% cov=73% WASLWNWFNITNWLWYIK-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * W 1 * * * * * * * * * * * * * * * * * * 0 * 1 0 * * * * * * 1116 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1116 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1116 0 0 L 4 * * * * * * * * * 0 * * * * * * * * * * 4 0 * * * * * * 1116 0 0 W 5 * * * * * * * * * * * * * * * * * * 0 * 5 0 * * * * * * 1116 0 0 N 6 * * * * * * * * * * * 0 * * * * * * * * 6 0 * * * * * * 1116 0 0 W 7 * * * * * * * * * * * * * * * * * * 0 * 7 0 * * * * * * 1116 0 0 F 8 * * * * 0 * * * * * * * * * * * * * * * 8 0 * * * * * * 1116 0 0 D 9 * * 336 * * * * * * * * 2268 * * * * * * * * 9 0 * * * * * * 1116 0 0 I 10 * * * * * * * 0 * * * * * * * * * * * * 10 0 * * * * * * 1116 0 0 T 11 * * * * * * * * * * * * * * * * 0 * * * 11 0 * * * * * * 1116 0 0 N 12 * * * * * * * * 2329 * * 733 * * * 2329 * * * * 12 0 * * * * * * 1116 0 0 W 13 * * * * * * * * * * * * * * * * * * 0 * 13 0 * * * * * * 1116 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 1116 0 0 W 15 * * * * * * * * * * * * * * * * * * 0 * 15 0 * * * * * * 1116 0 0 Y 16 * * * * * * * * * * * * * * * * * * * 0 16 0 * * * * * * 1116 0 0 I 17 * * * * * * * 0 * * * * * * * * * * * * 17 0 * * * * * * 1116 0 0 R 18 * * * * * * * * 336 * * * * * 2268 * * * * * 18 0 * * * * * * 1116 0 0 K 19 * * * * * * * * 0 * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 K 20 * * * * * * * * 0 * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 X 21 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 21 * * * * * * * 1000 0 0 X 22 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 22 * * * * * * * 1000 0 0 X 23 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 23 * * * * * * * 1000 0 0 X 24 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 24 * * * * * * * 1000 0 0 X 25 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 25 * * * * * * * 1000 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //