HHsearch 1.5
NAME  c5tdyA_
FAM   
FILE  c5tdyA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c5tdyA_.a3m 
DATE  Thu Feb  9 13:39:47 2017
LENG  35 match states, 35 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4507  2.8647 
SEQ
>ss_dssp
CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCC
>sa_dssp
EEEEEEEEEEDEEEEDDEEECDEDCDEDEEEEEEE
>ss_pred
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
>ss_conf
98378999999999998426956799999998419
>Consensus
xpeekellelleelenifsrspxdiaeivrlwffe
>c5tdyA_
XPEEKELLELLEELENIFSRSPSDIAEIVRLWFFE
>UniRef50_B9K6Q7(516-535:537) Flagellar M-ring protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K6Q7_THENN  E=0.0007 s/c=2.25 id=90% cov=60%
---------------NIFSRSPADIAEIVRLWFFE
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
X 1    3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	1
       *	*	*	*	*	*	*	0	0	0	

P 2    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

E 3    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

E 4    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

K 5    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

E 6    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

L 7    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

L 8    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

E 9    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

L 10   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

L 11   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

E 12   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

E 13   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

L 14   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

E 15   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

N 16   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1035	0	0	

I 17   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1035	0	0	

F 18   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1035	0	0	

S 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	19
       0	*	*	*	*	*	*	1035	0	0	

R 20   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	20
       0	*	*	*	*	*	*	1035	0	0	

S 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	21
       0	*	*	*	*	*	*	1035	0	0	

P 22   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1035	0	0	

S 23   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	23
       0	*	*	*	*	*	*	1035	0	0	

D 24   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1035	0	0	

I 25   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1035	0	0	

A 26   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1035	0	0	

E 27   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1035	0	0	

I 28   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1035	0	0	

V 29   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	29
       0	*	*	*	*	*	*	1035	0	0	

R 30   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	30
       0	*	*	*	*	*	*	1035	0	0	

L 31   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1035	0	0	

W 32   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	32
       0	*	*	*	*	*	*	1035	0	0	

F 33   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	33
       0	*	*	*	*	*	*	1035	0	0	

F 34   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	34
       0	*	*	*	*	*	*	1035	0	0	

E 35   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	35
       0	*	*	0	*	*	*	1035	0	0	

//