HHsearch 1.5 NAME c5svak_ FAM FILE c5svak_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5svak_.a3m DATE Thu Feb 9 18:15:01 2017 LENG 26 match states, 26 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.6467 4.4224 SEQ >ss_dssp CCSSSCCCCCCSSSSCSCCCCCCCC- >sa_dssp EEEEEEEEEEDEEDEEEEEEEEEEE- >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC >ss_conf 97777888637788754778875469 >Consensus PxYsPtSPxYsPtsPxYSPtSPxysx >c5svak_ PSYSPTSPSYSPTSPSYSPTSPSYSX >UniRef50_P14248(2249-2271:2452) DNA-directed RNA polymerase II subunit RPB1 n=48 Tax=Eukaryota RepID=RPB1_PLAFD E=0.0008 s/c=1.96 id=65% cov=88% PSYSPTSPTYNANNAYYSPTSP---- >UniRef50_P04052(1775-1798:1887) DNA-directed RNA polymerase II subunit RPB1 n=1391 Tax=cellular organisms RepID=RPB1_DROME E=0.0002 s/c=1.97 id=68% cov=96% PQYTPGSPQYSPASPKYSPTSPLY-- >UniRef50_P14248(2359-2385:2452) DNA-directed RNA polymerase II subunit RPB1 n=48 Tax=Eukaryota RepID=RPB1_PLAFD E=0.001 s/c=1.65 id=68% cov=96% PNYSPysiTSPKFSPTSPAYSISSPVY-- >UniRef50_P04050(1533-1555:1733) DNA-directed RNA polymerase II subunit RPB1 n=210 Tax=Eukaryota RepID=RPB1_YEAST E=6e-05 s/c=2.10 id=58% cov=92% PGFGVSSPGFSPTSPTYSPTSPA--- >UniRef50_B6AG69(1809-1833:1927) DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT E=0.0003 s/c=1.86 id=65% cov=100% PSYNPASPNYSPSSPHYNPASPNYS- >UniRef50_Q54LJ4(1906-1930:2563) Type A von Willebrand factor domain-containing protein n=3 Tax=Eukaryota RepID=Q54LJ4_DICDI E=0.0001 s/c=1.90 id=69% cov=100% PSYTPTSLLYAPTIPSYSPVSPSYA- >UniRef50_B6AG69(1844-1867:1927) DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT E=0.0001 s/c=1.98 id=68% cov=96% PNYSPSSPQYNPTSPNYSPSSPNY-- >UniRef50_O77165(1623-1647:1690) DNA-directed RNA polymerase (Fragment) n=3 Tax=cellular organisms RepID=O77165_9EUKA E=5e-05 s/c=1.95 id=69% cov=100% PAYSPASPAYSPASPAYSPASPAYS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2112 0 0 S 2 1834 * 4333 * * 3535 4065 * 3922 * * 3050 * 4710 * 1908 4941 * * * 2 0 * * * * * * 2112 0 0 Y 3 * * * * 3871 * * * * * * * * * * * * * * 102 3 0 * * * * * * 2092 0 0 S 4 4913 * 5714 * * 3871 * * * * * 4500 * * * 452 3263 * * * 4 0 * * * * * * 2092 0 0 P 5 * * * * * * * * * * * * 154 * * * * 3300 * * 5 65 4514 * 1585 585 * * 2092 1000 0 T 6 3878 * * * * 4906 * * * * * * * * * 2766 412 * * * 6 0 * * * * * * 2092 0 0 S 7 * * * * * * * * * * * * * * * 0 * * * * 7 0 * * * * * * 2092 0 0 P 8 * * * * * * * * * 3820 * * 106 * * * * * * * 8 0 * * * * * * 2092 0 0 S 9 3235 * * * * 3177 5056 * 3454 3820 5353 2433 * 2865 3479 4837 3066 * * * 9 45 5015 * 1585 585 * * 2092 1000 0 Y 10 * * * * 3157 * * * * * * * * * * * * * * 172 10 0 * * * * * * 2092 0 0 S 11 3820 * * * * * * * * * * 3350 * * * 341 4592 * * * 11 0 * * * * * * 2092 0 0 P 12 3982 * * * * * * * * * * * 143 5015 * * * * * * 12 67 * 4458 * * * * 2092 0 0 T 13 4088 * * * * * * * * * * 3346 * * * 4473 405 4559 * * 13 0 * * * * 0 * 2076 0 1000 S 14 5353 * * * * * * 3820 * * * 3982 * * * 322 4592 * * * 14 0 * * * * * * 2092 0 0 P 15 3982 * * * * 4458 * * * * * * 166 * * * * * * * 15 23 6013 * 2807 222 * * 2092 1000 0 S 16 3155 * * * * 4334 3797 * 3414 * 4089 3393 * 4353 * 1910 3181 5064 * 3982 16 36 5353 * 0 * * * 2092 1000 0 Y 17 * * * * * * * * * * 4704 * * * * * * * * 56 17 0 * * * * * * 2092 0 0 S 18 * * * * * * * * * * * 3932 * * * 145 5064 * * * 18 0 * * * * * * 2092 0 0 P 19 * * * * * * * 4514 * 5129 * * 108 * * * * * * * 19 0 * * * * * * 2092 0 0 T 20 3485 * * * * 5614 * * * * * 5432 * * 5279 3226 592 3820 * * 20 0 * * * * * * 2092 0 0 S 21 4458 * * * 4089 * * * * * * * * * * 159 * * * * 21 0 * * * * * * 2092 0 0 P 22 4066 * * * * * * * * * * * 89 * * * * * * * 22 0 * * * * * * 2087 0 0 S 23 2045 * * * * 4232 4879 * 4265 3899 * 2276 4075 5317 4676 3484 3512 4491 * * 23 0 * * * * * * 1950 0 0 Y 24 * * * * * * * 4184 * * * * * * * * * * * 82 24 0 * * * * * * 1900 0 0 S 25 3156 * * * * * * * * * * * * * * 172 * * * * 25 0 * * * * * * 1789 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 0 * * 0 * * * 1000 0 0 //