HHsearch 1.5 NAME c5svaT_ FAM FILE c5svaT_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5svaT_.a3m DATE Thu Feb 9 21:09:01 2017 LENG 91 match states, 91 columns in multiple alignment FILT 27 out of 31 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.4508 0.5636 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCCSSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >sa_dssp ECEEDCEEBDDDCEDADCBDEEEDECDEEBEEADECCEEBCDBCEDCDEDCCDDDDEEEEDDEDDDDDDEDDDEDDEEEDDEEDDDDEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9343899999999999999999998279879999999999999999999999999999999999999999999999999999999876239 >Consensus xxxxxixxxLxxxExxLxxLvxSisxfxpxxxxaxxLiexddxLxxxLxxLxxHqxxxxxixxLxxesxxLDxxxkxilxxLxxxrxELxa >c5svaT_ LSKVQLYEDLCRYEDTLSKLVESVDRFKPNLDIAKDLIRTDEALFENVKLLAEYDNIYRNLQKIDKDSEELDSKTRKILEILNECHDELKA >UniRef50_Q8WZL6(105-189:336) Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Yarrowia lipolytica RepID=MED4_YARLI E=2e-22 s/c=1.25 id=28% cov=95% -----IHQALPAFENTLLRFVQALSKYDFRQDLAETLMETESQFCEAVDELVEHQQAAQTIAALERVSEGLDDKIRDMIRKLAECRRELR- >UniRef50_Q6CJA3(32-121:285) Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Kluyveromyces lactis RepID=MED4_KLULA E=5e-21 s/c=1.12 id=42% cov=100% LQSVGIYQDLERYEETIQQLSKSVDTFKPDLSLIDKVIECDKKLYETLEEFDEYYKIEEELSRLDKEQKNIDNKTREILETLNTCYNSLN- >UniRef50_A5DAX2(65-156:288) Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DAX2_PICGU E=1e-16 s/c=0.95 id=23% cov=97% ---VPIVATLTEFENQLDAFTASISSFKGDQlaDSMSQLVQLNDTLKQELESLKTHQELGKRIGQLKQQNLELDTKAKQMLRELISCRAELR- >UniRef50_C4Y8T9(79-170:331) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y8T9_CLAL4 E=1e-06 s/c=0.59 id=21% cov=99% -NSLCITQSLRQFEEIFTDLSQCISSFKEDAitQKVADLIDVSQSMSSELNVLRQHSDLGKKIDLLSQTQNELDKEAKHILKELISCRSELK- >UniRef50_Q59U73(74-165:323) Mediator of RNA polymerase II transcription subunit 4 n=4 Tax=Candida RepID=MED4_CANAL E=0.0001 s/c=0.52 id=24% cov=92% -------QKVNEYERLLNELSEAVSQFKNDelQEKIGQIITCNDVLKQQIEDLNKHRNYSYEVDKLSDRNKILEENSKFILKELVSYRNELK- >UniRef50_C4R425(35-120:285) Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R425_PICPG E=1e-05 s/c=0.59 id=28% cov=95% -----IFQQLDNLEQDLSKLVTSINRFQPSKEAAHRLVSDVDELNYTIDDLLYiHDKRRSQVLNQEVENRHLNKSMINIMIGLTECRKELK- >UniRef50_A5DYN7(71-162:333) Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DYN7_LODEL E=4e-05 s/c=0.53 id=18% cov=100% IDSLPVISHIDEFRALLDELSEAVTLFKDDEvfTKFEKLTKLNTTIENDIKELHLHKQRRKSLKQLQNRHKSLDDLQKNTLKKLLSYRSELR- >UniRef50_Q7SA34(10-90:355) Predicted protein n=3 Tax=Sordariales RepID=Q7SA34_NEUCR E=3e-22 s/c=1.31 id=24% cov=90% ----------ERVEKALATFIDSIAKYNPSEKLAEDLVAADRELAAGLKELERHQNNHARILQLRQETASLDQQTKDIIGGLWNMRKEVKS >UniRef50_C4JNJ0(4-93:432) Predicted protein n=3 Tax=Onygenales RepID=C4JNJ0_UNCRE E=3e-12 s/c=0.81 id=22% cov=97% ----ALFTHLSAIEQCLNALVSSISSsptAAGAPAAALALLEADDNLTSALDTLRTHQANYAKILQLRADASSLEGRVREIVQEVGKMGDDISA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 1955 * 430 * * * * * * * * * * 1 0 * * * * * * 2620 0 0 S 2 * * 2325 * * * 3057 * * * * 2475 * 2950 * 1431 * * * * 2 0 * * * * * * 2994 0 0 K 3 * * * * * * * * 1088 * * * * * * 917 * * * * 3 0 * * * * * * 3151 0 0 V 4 * * * * * * * * * 1069 * * * * * * * 934 * * 4 0 * * * * * * 3339 0 0 Q 5 2463 3367 * * * 3542 * * * * * * 2227 1591 * 3469 * * * * 5 0 * * * * * * 3815 0 0 L 6 * * * * * * * 720 * 2119 * * * * * * * 2620 * * 6 0 * * * * * * 4185 0 0 Y 7 * * * * 2461 * 3459 3354 * * * * * * * 3782 3630 2757 * 1607 7 0 * * * * * * 4185 0 0 E 8 2979 * * 2445 * * * * * * * 4010 * 1383 * 2665 3535 * * * 8 0 * * * * * * 4266 0 0 D 9 2682 * 1689 * * * 2515 * 2931 * * * * 3533 * 3735 3913 * * * 9 0 * * * * * * 4266 0 0 L 10 * * * * * * * 2770 * 469 * * * * * * * 2932 * * 10 0 * * * * * * 4457 0 0 C 11 * 2880 2459 1897 * * * * * * * 3217 4048 * 4078 3469 3377 * * * 11 0 * * * * * * 4666 0 0 R 12 3273 * * 1984 * 4574 * * * * * 3386 * 2837 1450 * * * * * 12 0 * * * * * * 4717 0 0 Y 13 * * * * 1583 * * 3550 * 2559 * * * * * * * 2427 * 2151 13 0 * * * * * * 4712 0 0 E 14 * * * 95 * * * * * * * * * * 3966 * * * * * 14 0 * * * * * * 4712 0 0 D 15 3966 * 3007 2446 * * * * 1940 * * 2562 * 2741 4361 * * * * * 15 0 * * * * * * 4712 0 0 T 16 2193 4447 4020 * * * * 4281 3118 3150 * 4570 * 4555 * 4688 1883 * * * 16 0 * * * * * * 4712 0 0 L 17 * * * * 4281 * * 4292 * 156 * * * * * * * * * * 17 0 * * * * * * 4712 0 0 S 18 2436 * 3231 * * 3620 * * * 4217 * 2265 * 3476 * 2780 3419 4773 * * 18 0 * * * * * * 4712 0 0 K 19 2238 * 4281 3150 * * * * 2781 * * 3137 * 4292 3433 3119 3756 4966 * * 19 0 * * * * * * 4712 0 0 L 20 * * * * 2934 * * 4624 * 346 4577 * * * * * * * * * 20 0 * * * * * * 4712 0 0 V 21 * * * * * * * 2179 * 4608 * * * * * 1748 4555 1330 * * 21 0 * * * * * * 4712 0 0 E 22 3077 * 2106 2111 4570 * * * 4292 * * 4966 * 3249 * 4447 2822 * * * 22 0 * * * * * * 4712 0 0 S 23 2587 4281 * * * * * * 4570 * * 4624 * * * 516 * * * * 23 0 * * * * * * 4712 0 0 V 24 * * * * * * * 1346 * 2568 * * * * * * * 1191 * * 24 0 * * * * * * 4712 0 0 D 25 2674 * 2211 * * * * * * * * 4020 * * * 1345 2539 * * * 25 0 * * * * * * 4712 0 0 R 26 4661 * * * * * * * 1673 3966 * 4565 * 3486 2781 2459 3011 * * * 26 182 3526 4966 1330 732 * * 4712 1324 0 F 27 3386 * * * 787 * * * * * * 4541 * * * * * * * 1828 27 0 * * * * 0 * 4700 0 1000 K 28 4447 * 4217 * * * 3895 4608 1228 * * 2350 * 3316 * 3867 * * * * 28 0 * * * * * * 4712 0 0 P 29 * * 3966 2899 4217 2950 * * * * * 4361 811 * * * * * * * 29 0 * * * * * * 4712 0 0 N 30 3018 * 1251 * * 4624 * * * * * 4492 * * 4217 1980 4966 * * 4957 30 137 3462 * 1000 1000 * * 4712 1444 0 L 31 2665 * * 3344 * * * * 4020 2221 * * 2618 2136 * * 4835 4565 * * 31 319 2333 * 1000 1000 * * 4712 2242 0 D 32 2351 * 2829 2407 * * * * 2729 * * * * 2924 * 3424 3966 4835 * * 32 0 * * * * * * 4712 0 0 I 33 1830 * * * * 5571 4984 3481 2758 1830 * 4848 * 5097 * 4676 * 4492 * * 33 0 * * * * * * 4940 0 0 A 34 727 * * * 4171 4492 * 2896 * * 4676 * * * * * * 3027 * * 34 0 * * * * * * 4940 0 0 K 35 4475 * 4346 2269 * 3554 3244 4087 4425 3176 * 4492 5571 3246 4630 4676 4600 * * * 35 0 * * * * * * 4940 0 0 D 36 2369 * 1921 2784 * * * * 2512 * * * * 3542 4009 5321 4357 * * * 36 29 5653 * 2000 415 * * 4940 1000 0 L 37 * * * * * * * 3617 * 201 * * * * * * * 4356 * * 37 0 * * * * * * 4940 0 0 I 38 * * * 5018 * * * 1252 * 2223 4357 * * 5131 * * 4189 2301 * * 38 0 * * * * * * 4940 0 0 R 39 2248 * 3543 1253 * * * * 4189 4802 * * * 4690 4458 4009 4409 * * * 39 0 * * * * * * 4940 0 0 T 40 1254 3382 4009 * * * * 3820 * 2934 * * * * * 4652 3407 3524 * * 40 0 * * * * * * 4940 0 0 D 41 * * 854 2967 * * * * * * * 2235 * * * 4495 * 4009 * * 41 0 * * * * * * 4940 0 0 E 42 4821 * 1207 3486 * * * * 2646 * * 5018 * 3641 4993 3554 4189 * * * 42 0 * * * * * * 4940 0 0 A 43 3403 * 4860 1900 * * * 4746 3553 * * 5166 * 3019 * 2962 3417 3216 * * 43 0 * * * * * * 4940 0 0 L 44 * * * * 4357 * * 2923 * 456 4495 * * * * * * 4450 * * 44 0 * * * * * * 4940 0 0 F 45 4993 3539 * 4189 4458 * * * 3056 * * 3352 * 4515 * 1713 4389 * * 2577 45 0 * * * * * * 4940 0 0 E 46 4993 * 3652 2805 * * 4846 * 2751 * * 4189 * 3542 4318 1691 * * * 4009 46 0 * * * * * * 4940 0 0 N 47 2135 * 4189 3055 * 2285 * * 4860 * * 3611 * 4409 * 3086 3172 * * * 47 0 * * * * * * 4940 0 0 V 48 * * * * * * * 2085 * 621 * * * * * * * 3131 * * 48 0 * * * * * * 4940 0 0 K 49 3642 * 1854 1691 * 4746 * * 2380 * * 4495 * 5381 * 4802 * * * * 49 0 * * * * * * 4940 0 0 L 50 * 4651 3195 1804 * * * * * 2783 * * * 3122 * 3620 2483 4495 * * 50 0 * * * * * * 4940 0 0 L 51 * * * * 3452 * * * * 312 * * * * * * * 3278 * * 51 0 * * * * * * 4940 0 0 A 52 3505 * 3586 3905 * * 3301 * 3718 4009 * 3592 3715 3278 2502 4846 * 4357 * * 52 0 * * * * * * 4940 0 0 E 53 * * * 2429 * * * * 2639 4189 4652 * * 2959 2793 * 2157 * * 4009 53 93 4009 * 0 * * * 4940 1000 0 Y 54 * * * * * * 346 * * * * * * * * * * * * 2231 54 0 * * * * * * 4940 0 0 D 55 * * 2143 * * * * * 4189 * * * * 980 3074 4495 * * * 4356 55 0 * * * * * * 4940 0 0 N 56 2765 * 3615 3032 * * * * 3172 4781 * 2193 * 2650 3699 4424 * * * * 56 0 * * * * * * 4940 0 0 I 57 4357 * * * * * * 2231 * 2692 * 1254 * * 3096 * * * * 4409 57 0 * * * * * * 4940 0 0 Y 58 4357 * 3074 4356 * 2692 2853 * * * * 4821 * * 3096 4409 4802 * * 1970 58 0 * * * * * * 4940 0 0 R 59 1835 * * 3586 * * 4802 4746 2858 4074 * * * 4357 4458 2826 4651 4515 * 4409 59 0 * * * * * * 4940 0 0 N 60 * * * 2852 * * 4515 * 2328 4746 * 3645 * 3344 1924 4189 3563 * * * 60 0 * * * * * * 4940 0 0 L 61 4651 * * * * * * 1049 * 1609 * * * * * * * 2747 * * 61 0 * * * * * * 4940 0 0 Q 62 4357 * 2974 * * 4690 * * 2021 1703 * 4554 * 2834 * 4356 * * * * 62 0 * * * * * * 4940 0 0 K 63 4357 * * 3989 * 4746 4652 * 2955 4495 * 3240 * 2060 2459 * 3179 * * * 63 0 * * * * * * 4940 0 0 I 64 * * * * * * * 4458 * 164 * * * 4009 * * * * * * 64 0 * * * * * * 4940 0 0 D 65 * * 2501 2460 * * 4802 * 3718 * * * * 4189 1383 3451 * * * * 65 0 * * * * * * 4940 0 0 K 66 2297 * 2965 2978 * * * * 2869 * * 4189 * 2738 4357 4652 4343 4009 * * 66 0 * * * * * * 4940 0 0 D 67 4515 * 3176 1053 * * * * * * * * * 3766 3294 5018 3201 4357 * * 67 0 * * * * * * 4940 0 0 S 68 2483 * * * * * 3401 * * * * 2757 * 2939 * 1529 3905 4846 * * 68 0 * * * * * * 4940 0 0 E 69 2885 * * 2954 * * * * 2418 3550 * 3524 * 4622 3294 2986 4515 5381 * 4652 69 0 * * * * * * 4940 0 0 E 70 2331 * 3715 2388 * 4357 3331 4409 * 4821 * 2798 * * * 2647 * * * * 70 0 * * * * * * 4940 0 0 L 71 * * * * * * 4821 3553 * 252 * * * * * * 4651 * * * 71 0 * * * * * * 4940 0 0 D 72 * * 562 1940 * * * * * * * 4009 * * * * * * * * 72 0 * * * * * * 4940 0 0 S 73 4074 * 2761 2058 * 5166 * * 3232 * * 2606 * 4148 4554 4458 3185 * * * 73 0 * * * * * * 4940 0 0 K 74 * * * 4495 * * * * 1816 4189 * 4409 * 2056 2356 4009 3802 * * * 74 0 * * * * * * 4940 0 0 T 75 3589 * * * * * * 2010 4846 4821 4009 * * 4189 * 3074 2032 3079 * * 75 0 * * * * * * 4940 0 0 R 76 4781 * * * * * * 3294 1180 * * * * 4652 1394 * * * * * 76 0 * * * * * * 4940 0 0 K 77 * * 2270 2541 4409 4515 4495 4746 3273 * * 3096 * 4690 4651 4194 4047 * * 4860 77 0 * * * * * * 4940 0 0 I 78 * * * * 4802 * * 696 * * 3514 * * * * 4846 2458 4554 * * 78 0 * * * * * * 4940 0 0 L 79 * * * * * * * 3171 * 791 3358 * * * * * * 2227 * * 79 0 * * * * * * 4940 0 0 E 80 * * * 2501 * 3883 * 3352 2198 * * * * 5166 2068 3399 4846 4515 * * 80 0 * * * * * * 4940 0 0 I 81 4799 * 3986 1820 * 3411 * 3581 3242 4781 * * * 5319 * 3898 2280 * * * 81 0 * * * * * * 4945 0 0 L 82 * * * * * * * 3986 * 263 * * * * * * * 3270 * * 82 0 * * * * * * 4945 0 0 N 83 2768 * * 4352 * 3452 * 2669 * 4176 * 3380 * * * 2733 2847 4398 3892 * 83 0 * * * * * * 4945 0 0 E 84 * * * 1699 * 4402 * * 5009 * * 3366 * * * 1780 2150 * * * 84 0 * * * * * * 4957 0 0 C 85 4402 1263 * * * * * * * 3970 3333 * * * * * 2802 4235 * 2503 85 0 * * * * * * 4957 0 0 H 86 * * * * * 2333 4409 * * * * * * * 679 * * * * 2944 86 0 * * * * * * 4957 0 0 D 87 4653 * 3258 4521 * * 4741 * 2194 * * 1941 * * 3095 2485 * * * * 87 0 * * * * * * 4957 0 0 E 88 * * 2550 442 * * * * * * 4521 * * * * 4338 * * * * 88 0 * * * * * * 4957 0 0 L 89 * * * * * * * 2185 * 508 4485 * * * * * * 4961 * * 89 0 * * * * * * 4957 0 0 K 90 * * * * * * 4340 * 1408 * * 2378 * * 2103 3456 4116 * * * 90 0 * * * * * * 4602 0 0 A 91 509 * * * * * * * * * * * * * * 1750 * * * * 91 0 * * 0 * * * 3332 0 0 //