HHsearch 1.5 NAME c5oqmm_ FAM FILE c5oqmm_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5oqmm_.a3m DATE Sat May 12 08:28:19 2018 LENG 103 match states, 103 columns in multiple alignment FILT 16 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4611 2.0422 SEQ >ss_dssp CTTSSCSCSCCCSCSSCTTSCHHHHTTTHHHHHHHCSBCSSSSBCCCCCSSSHHHHHSSCSCCCCCCHHHHHHCCCCCCCCHHHHHHHHTTCCSSCCSCC CCC >sa_dssp EDDCEDEDEEDEDDEECEECDDDEEDECDDDDCDEDDDCEEEDDDDDDCEDDCDDCEEDEEDDEEEEDDDCDDDEEEEEDDDDDDDDDDEDDDDEDEEDD EEE >ss_pred CEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH HCC >ss_conf 9277347787888998865658988184348888741277775214577989989852334422346777001046713566642677998743113565 219 >Consensus xyyYvxxktxyxxxxPxpxxdLixlyGLxxiAxsVARxdxxggkknkLRKSYKgxIkdLxGkxxxxkxxxlxxxxxxPxxxxdlxxxxlsxfexxxxxxx xxx >c5oqmm_ YYYYVDPETTYTYQQPNPLQDLISVYGLDDISRQVARTNLDGTKAVKLRKSYKNQIADLSGKFSTISEQQWREQLQPPNFDWDLCSSVLSQFERSYPSEF ANQ >UniRef50_Q6C6D6(4-94:181) Mediator of RNA polymerase II transcription subunit 19 n=1 Tax=Yarrowia lipolytica RepID=MED19_YARLI E=1e-28 s/c=1.40 id=33% cov=89% --YYLADDTKYTRPSTSAMSNLTELCGLKGLADSMARFDPVTGEKNKLRKSYKNQLLDLTGKFDIPSQPSLVRIIRDPVL-AETGGKSLSVFDR------ --- >UniRef50_C4R6D2(9-104:155) Subunit of the RNA polymerase II mediator complex n=1 Tax=Pichia pastoris GS115 RepID=C4R6D2_PICPG E=6e-23 s/c=1.12 id=48% cov=86% -YYFIDDK-----EDPSPQLNFISTFNLDQIAKSVARTNSDGTKDVKLRKSYKSHISDLLGKHYISKEHNLSPIVfgPPPDfvklepFDKDYLSRTLT-F EKS-------- >UniRef50_Q2GW22(101-187:326) Mediator of RNA polymerase II transcription subunit 19 n=5 Tax=Sordariomycetes RepID=MED19_CHAGB E=9e-05 s/c=0.55 id=31% cov=79% ---YLLCRTPHPRPRPHVSEDLFEMYGLTGLAIEVARVRPNG-EKNALRKTYKGHIKRLgvqghfdEDKQDPNREYSLSHLMKLPQDVWDL--------- ---------- >UniRef50_A3LV29(15-118:173) Mediator of RNA polymerase II transcription subunit 19 n=3 Tax=Saccharomycetales RepID=MED19_PICST E=1e-25 s/c=1.12 id=43% cov=92% -YYLVNSKHKYSITSPSPLDNLLVLYGLEPIAKSLARTNADGSKGVKLRKSYKNHIQDLPGKHQIVGGQKPIPaglldpmVAQAPDIIKELDPELLSrgl RFEKT-------- >UniRef50_B6K2M7(7-81:139) Mediator of RNA polymerase II transcription subunit 19 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2M7_SCHJY E=6e-15 s/c=1.09 id=31% cov=68% -FYYV-DTFSYQPSKPSAHENLTEKFELQDLAYKVRRVDEQGNKR-KMRRSYKAYIQDLPGSIEIAKDNTIR---------------------------- --- >UniRef50_B2VT92(165-248:401) Putative uncharacterized protein n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VT92_PYRTR E=2e-12 s/c=0.88 id=31% cov=50% ------DKEKIETSRPHPTQNFIRLYRLEPLASSVARNDPVTGEKiNKLRKSYEGHI------------------------------------------- ---- >UniRef50_B8LVV2(204-292:453) Putative uncharacterized protein n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8LVV2_TALSN E=3e-11 s/c=0.78 id=34% cov=62% -------KSVPTITGPDPSFDLISLYGLGPIGRSVMRADPTTGEKiNRLRKSYEGKLKglGLSGRNKAVKNEN--------------------------- ------ >UniRef50_A6SHT2(100-183:360) Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A6SHT2_BOTFB E=9e-14 s/c=0.93 id=34% cov=65% ---YLLCRTLHKHQNLNVQQDLYDRFGLNGIAASLARVTADG-KKNTVRKTYKGYIKSLgiAGQFDAVKGPE---------------------------- ----- >UniRef50_C9S531(101-171:358) Mediator of RNA polymerase II transcription subunit 19 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S531_VERA1 E=5e-13 s/c=1.06 id=39% cov=52% ---------------PCITEDLFEMFGLTDIAAEVAREKSNGDKtiKNGLRKTYKGHIKRLgiMGRFDSVAQ---------------------------- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Y 1 * * * * * * * * * * * * * * * * * * * 0 1 0 * * * * * * 1000 0 0 Y 2 * * * * 2322 * * * * * * * * * * * * * * 322 2 0 * * * * * * 2010 0 0 Y 3 * * * * * * 2727 * * * * * * * * * * * * 236 3 0 * * * * * * 2272 0 0 Y 4 * * * * 3122 * * * * 3151 * * * * * * * * * 372 4 0 * * * * * * 2774 0 0 V 5 * * * * * * * 3122 * 1141 * * * * * * * 1212 * * 5 165 * 3210 * * * * 2774 0 0 D 6 2826 * 1997 * * 2899 * * * 1505 * 3035 * * * * * * * * 6 208 * 2899 * * 0 * 2679 0 1000 P 7 * 1671 1094 * * * * * * * * * 3136 * * 3268 * * * * 7 0 * * * * 0 * 2854 0 1000 E 8 * * 3660 3658 * * * * 1157 * * * * * 2106 3742 3535 * * * 8 113 * 3734 * * * * 2954 0 0 T 9 * * * 3681 3404 * 3703 * * * * * * * * 1803 1381 3638 * * 9 0 * * * * * 0 2887 0 1000 T 10 * * 3638 * * * * * 2075 3337 * * 3879 3660 * 1855 3437 3885 * * 10 0 * * * * * 0 2887 0 1000 Y 11 * * * * * * 1745 3681 * * * * 3885 * * * * * * 847 11 0 * * * * * 0 2887 0 1000 T 12 * * * 3681 * * * 4257 3337 * * * 3879 1978 * 2629 1800 * * * 12 0 * * * * * 0 2887 0 1000 Y 13 4257 * * * * * 3337 2124 * * * * 1978 * 2732 * 3681 4482 * 3437 13 0 * * * * 0 * 2887 0 1000 Q 14 * * * 3734 * * * * * * * * 2186 2549 * 1853 1958 * * * 14 0 * * * * * * 2954 0 0 Q 15 * * 3734 * * 2080 * * 3535 * * 3447 * 3658 1817 2763 * * * * 15 0 * * * * * * 2954 0 0 P 16 * * * * * * * * * 3529 * * 258 * * * 3700 * * * 16 0 * * * * * * 2991 0 0 N 17 * 4156 3188 * * * 2413 * * * * 2053 * * * 1303 * * * * 17 0 * * * * * * 2991 0 0 P 18 2111 * * * * * * 4156 * 3915 * * 992 * * * * 2804 * * 18 0 * * * * * * 2991 0 0 L 19 * * * * * * 2377 * * 2822 3700 * * 2671 4704 1874 3047 * * * 19 0 * * * * * * 2991 0 0 Q 20 * * 3940 1934 2846 * * * * 2667 * * * 1739 * 3700 * * * * 20 0 * * * * * * 2991 0 0 D 21 * * 816 * * * * * * * * 1211 * * * * * * * * 21 0 * * * * * * 2991 0 0 L 22 * * * * 2886 * * * * 210 * * * * * * * * * * 22 0 * * * * * * 2991 0 0 I 23 * * * * 2482 * * 1213 * 3940 * * * * * * 2647 3679 * 3529 23 0 * * * * * * 2991 0 0 S 24 * * 3529 1284 * * * * * * * * * * 3946 1423 * 3940 * * 24 0 * * * * * * 2991 0 0 V 25 * * * * * * * * 3596 986 2482 * * * 3529 * 3828 3713 * * 25 0 * * * * * * 2991 0 0 Y 26 * 3700 * * 1757 * * * * * * * * * * * * * * 673 26 0 * * * * * * 2991 0 0 G 27 * * * 3596 * 355 * * * * * 3828 * * 3946 * * * * * 27 0 * * * * * * 2991 0 0 L 28 * * * * * * * * * 0 * * * * * * * * * * 28 0 * * * * * * 2991 0 0 D 29 3915 * 2769 2943 * 2145 * * 3700 * * 3529 * 3596 * * 2438 * * * 29 0 * * * * * * 2991 0 0 D 30 * * 1830 3798 * 2183 * * * * * * 1489 3828 * * * * * * 30 0 * * * * * * 2991 0 0 I 31 * * * * * * * 1261 * 1254 * * * * * * * 2613 * * 31 0 * * * * * * 2991 0 0 S 32 216 * * * * 3994 * * * * * * * * * 3713 * * * * 32 0 * * * * * * 2991 0 0 R 33 1809 * 3700 * * * * 4143 1975 * * * * * 2847 3252 * * * 3596 33 0 * * * * * * 2991 0 0 Q 34 * * * 2482 * * * * 2694 * * * * 3713 * 761 * * * * 34 0 * * * * * * 2991 0 0 V 35 * * * * * * * * * 2720 3700 * * * * * * 504 * 3915 35 0 * * * * * * 2991 0 0 A 36 353 * * * * 3798 * * * * 3994 * * * 3596 * * * * * 36 0 * * * * * * 2991 0 0 R 37 * * * * * * * * * * * * * * 0 * * * * * 37 0 * * * * * * 2991 0 0 T 38 3994 * * 4156 3700 * * 3915 * * 4412 3946 * * * * 1607 1748 * * 38 0 * * * * * * 2991 0 0 N 39 * * 936 * * * * * 3030 * * 2239 * * 4143 * 3529 * * * 39 0 * * * * * * 2991 0 0 L 40 2720 * 3915 2694 * * * * * 3713 * * 1236 * * 2983 * * * * 40 99 * 3915 * * * * 2991 0 0 D 41 * * 1675 * 3717 * * * * * * 2904 * 3522 * * 3929 1624 * * 41 0 * * * * * 0 2943 0 1000 G 42 * * * * * 713 * * * * * * * * * * 1358 * * * 42 253 * 2638 * * 0 * 2943 0 1000 T 43 * * 3788 * * 974 * * * * * 2514 * * * 3694 2589 * * * 43 0 * * * * 0 * 2830 0 1459 K 44 * * * 1236 * * * * 974 * * * * 3915 * * * * * * 44 83 4156 * 1000 1000 * * 2991 1000 0 A 45 3713 * 3828 * * 3940 * * 658 * * * * * 2694 * * * * * 45 851 1781 2694 0 * * * 2991 1527 0 V 46 * * * * * * * * * * * 422 * * * * * 1980 * * 46 0 * * * * 0 * 2755 0 1221 K 47 3024 * * * * 4156 * * 977 * * * * * 2145 * 3529 * * * 47 0 * * * * * * 2991 0 0 L 48 * * * * * * * * * 398 2694 * * * * * * 3529 * * 48 0 * * * * * * 2991 0 0 R 49 * * * * * * * * * * * * * * 0 * * * * * 49 0 * * * * * * 2991 0 0 K 50 * * * * * * * * 242 * * * * * 2694 * * * * * 50 0 * * * * * * 2991 0 0 S 51 * * * * * * * * * * * * * * * 445 1912 * * * 51 0 * * * * * * 2991 0 0 Y 52 * * * * * * * * * * * * * * * * * * * 0 52 0 * * * * * * 2991 0 0 K 53 * * * 1781 * * * * 496 * * * * * * * * * * * 53 0 * * * * * * 2991 0 0 N 54 2694 * * * * 845 * * * * * 2195 * * * 3828 * * * * 54 0 * * * * * * 2991 0 0 Q 55 * * * * * * 1398 * 2145 * * * * 2706 * * * * * 2052 55 0 * * * * * * 2991 0 0 I 56 * * * * * * * 298 * 2421 * * * * * * * * * * 56 0 * * * * * * 2991 0 0 A 57 3451 * * * * * * * 1150 3287 * * * 1924 * 3443 * * * * 57 175 3126 * 1000 1000 * * 2941 1000 0 D 58 * * 864 * * 3126 * * 3628 * * * * * 2712 3285 * * * * 58 0 * * * * * * 2941 0 0 L 59 * * * * * * * * * 0 * * * * * * * * * * 59 469 1849 * 1960 429 * * 2941 1604 0 S 60 3192 * * 3274 * * * * * 3393 3561 * 1849 * * 2167 3223 * * * 60 0 * * * * * * 3024 0 0 G 61 * * 3274 * * 157 * * * * * * * * * * * * * * 61 0 * * * * * * 3024 0 0 K 62 * * * * * * * * 926 * * * * 3185 2123 2900 * * * * 62 0 * * * * * * 2824 0 0 F 63 * * * * 1223 * 2302 2900 * * * 2966 * 3227 * * * * * * 63 0 * * * * * * 2824 0 0 S 64 * * 1201 2900 * * * * 2966 * * * * 3393 * 3318 * * * 3216 64 0 * * * * * * 2824 0 0 T 65 2071 * * * * * * 1141 * * * * 3227 * * 3300 3318 * * * 65 0 * * * * * * 2824 0 0 I 66 2900 * * * * * * 3318 * * * 3227 3100 * * 3216 * 1202 * * 66 0 * * * * * * 2824 0 0 S 67 3300 * * * * 3393 * * 1060 * * * * * 3227 2205 * * * * 67 0 * * * * * * 2824 0 0 E 68 * * 2900 1668 * 2285 * * * * * 2966 * 2197 * * * * * * 68 0 * * * * * * 2824 0 0 Q 69 * * * 2820 * * 3196 * * * * 2748 2006 2191 * * * * * 2918 69 0 * * * * * * 2996 0 0 Q 70 * * * 2977 * * * * 3232 * * 1996 * 3151 * 1975 2748 * * * 70 0 * * * * * * 2996 0 0 W 71 * * * * * * * 2452 * 992 * * 2666 * * * * * 2673 * 71 0 * * * * * * 2666 0 0 R 72 * * * * * * * 2666 * * * * * * 1558 1577 * 2577 * * 72 0 * * * * * * 2666 0 0 E 73 * * * 2388 * * 2138 * * * * * 1425 * 2257 * * * * * 73 314 2353 * 2807 222 * * 2469 1000 0 Q 74 * * * * * * * 1374 * 2138 * * * 2388 * * * 2353 * * 74 0 * * * * * * 2469 0 0 L 75 2353 * * * * * * 2257 * 2388 2138 * * * * * * 2501 * * 75 280 2501 * 1000 1000 * * 2469 1000 0 Q 76 * * * * * * * * 2138 * * * 2501 1370 2257 * * * * * 76 0 * * * * * * 2469 0 0 P 77 2353 * 2257 * * * * * * 2138 * * 1443 * * * * * * * 77 0 * * * * * * 2469 0 0 P 78 * * * * * * * * * * * * 0 * * * * * * * 78 0 * * * * * * 2469 0 0 N 79 * * 1425 * * * * * * * * 2388 * 2138 * * * 2257 * * 79 280 2501 * 2585 263 * * 2469 1000 0 F 80 * * 2138 * 1443 * * 2353 * 2257 * * * * * * * * * * 80 339 * 2257 * * * * 2469 0 0 D 81 * * 1130 * * * * 2012 * * * * * * * * * 1760 * * 81 0 * * * * 0 * 2215 0 1000 W 82 2257 * * * * * * * 1425 * * * * * * * * * 1257 * 82 0 * * * * * * 2469 0 0 D 83 * * 749 1304 * * * * * * * * * * * * * * * * 83 0 * * * * * * 2469 0 0 L 84 * * * * * * * * * 704 * * * * * * 2257 * * 2501 84 0 * * * * * * 2469 0 0 C 85 * 2010 2032 * * 1814 * * * 2166 * * * * * * * * * * 85 0 * * * * * * 2116 0 0 S 86 * * * * * 1814 * * * * * * 2032 * * 1086 * * * * 86 0 * * * * * * 2116 0 0 S 87 * * * 2032 * * * * 1814 * * * * * 2166 2010 * * * * 87 0 * * * * * * 2116 0 0 V 88 * * * * * * * * * 2032 * * * * * 1814 2166 2010 * * 88 0 * * * * * * 2116 0 0 L 89 * * * * * * * * * 0 * * * * * * * * * * 89 0 * * * * * * 2116 0 0 S 90 * * * * * * * * * * * * * * * 364 2166 * * * 90 909 2032 2166 1585 585 * * 2116 1000 0 Q 91 * * * * * * * * * * * * * 1601 1625 * * 1531 * * 91 0 * * * * 0 * 1924 0 1000 F 92 * * * * 0 * * * * * * * * * * * * * * * 92 0 * * * * * * 2116 0 0 E 93 * * 1814 483 * * * * * * * * * * * * * * * * 93 0 * * * * * * 2116 0 0 R 94 * * * * * * * * 1097 * * * * * 909 * * * * * 94 0 * * * * * * 2116 0 0 S 95 * * * * * * * * * * * * * * * 614 1529 * * * 95 0 * * * * * * 1712 0 0 Y 96 * * * * * * * * * * * * * * * * * * * 0 96 0 * * * * * * 1000 0 0 P 97 * * * * * * * * * * * * 0 * * * * * * * 97 0 * * * * * * 1000 0 0 S 98 * * * * * * * * * * * * * * * 0 * * * * 98 0 * * * * * * 1000 0 0 E 99 * * * 0 * * * * * * * * * * * * * * * * 99 0 * * * * * * 1000 0 0 F 100 * * * * 0 * * * * * * * * * * * * * * * 100 0 * * * * * * 1000 0 0 A 101 0 * * * * * * * * * * * * * * * * * * * 101 0 * * * * * * 1000 0 0 N 102 * * * * * * * * * * * 0 * * * * * * * * 102 0 * * * * * * 1000 0 0 Q 103 * * * * * * * * * * * * * 0 * * * * * * 103 0 * * 0 * * * 1000 0 0 //