HHsearch 1.5 NAME c5ooma_ FAM FILE c5ooma_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ooma_.a3m DATE Sat Sep 16 08:27:21 2017 LENG 82 match states, 82 columns in multiple alignment FILT 23 out of 27 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4438 1.5975 SEQ >ss_dssp CCCSSCTTSSBCCEEEECSSSCCEEEECCBCCCCGGGCCCCCCCHHHHHHHHHHHHTCCSTTTSCCCHHHHHSSCSSCCCCC >sa_dssp EEDDEECEEECDCEEDEDEEDEEEDDEEDECEEDEEEDEEEEEEDDEDAEECBEEEEDEDEECDEDDEEEEDEEEEEDEEEE >ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCCCCC >ss_conf 9456477767761689936999899944889998110688866536028999975345531121663056665302686669 >Consensus xxxxxxxdxxcxxeixvTxdgxTIVcwHPxxxxPYExTkPipxxxxPxxxELxkxfxTtKHrWfpxxrxxrxrkxxxPPkDR >c5ooma_ TYSPLPDDYNCNVELALTSDGRTIVCYHPSVDIPYEHTKPIPREEGPMIEQLSKMFFTTKHRWYPHGRYHRCRKNLNPPKDR >UniRef50_Q290T1(17-122:125) GA11910 n=6 Tax=Drosophila RepID=Q290T1_DROPS E=3e-07 s/c=0.53 id=47% cov=80% --------------VAITKNGKTIVAWHPETAFPYEHSKPLPKvveaQTSAVIKetalktamqgfkrkhpevaryELSKLTHTTKHRWFPRARDKKAKKT ---PMDR >UniRef50_UPI0000D558EF(27-116:119) PREDICTED: similar to mitochondrial ribosomal protein L42 CG12921-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D558EF E=0.0003 s/c=0.51 id=45% cov=82% -------------KIVLTDDESTYVAWHPKQDFPYECTQPLPEKQvedtsvlkTQLTPQLKEVFnkktpeqarqelmnitHTTKHRWFPRARDKRAKKT- --PMDR >UniRef50_UPI00017937A1(24-104:117) PREDICTED: similar to mitochondrial ribosomal protein L42 CG12921-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI00017937A1 E=6e-14 s/c=0.97 id=47% cov=71% --------------IVVTDDASTIVCYHPESSFPYECTKPLPVNKVQDNsvlkvqnkdfvhevfskpnneivqQELMKMTYTTKHRWVPPKKWKR----- ------ >UniRef50_UPI00015B4516(26-112:118) PREDICTED: similar to GA11910-PA n=1 Tax=Nasonia vitripennis RepID=UPI00015B4516 E=2e-12 s/c=0.84 id=38% cov=79% ------------PELVVFMNNEMIVCWHPEQTFPYECSKPLPvREPEPESvlkigeaevkamfkhpkadlipEELGRITYTCKHRWFPKARSKKYKNTE- ----- >UniRef50_O62503(20-108:109) Protein ZC410.7a, confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=O62503_CAEEL E=4e-11 s/c=0.78 id=38% cov=79% -------------KVVVCANG-TIAAWHPPQHFPYEHTKPIDLgsltkkdqssrlsaaakassiPREPVNAELKDIFYTSKHEWYSRTREERLRNVAAP- --- >UniRef50_UPI000186E5BD(28-122:125) hypothetical protein Phum_PHUM380210 n=1 Tax=Pediculus humanus corporis RepID=UPI000186E5BD E=2e-13 s/c=0.81 id=34% cov=87% ----------CSANITMTDDSSVVVCWHPEESYPYEMSQPIkekkkivsnsllkvqsnkellsvlkPKRKDLVRQELMALTHSQKHVWFPPK--FQFRKK QQPEKDR >UniRef50_C3XYI9(33-128:139) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XYI9_BRAFL E=6e-13 s/c=0.78 id=54% cov=87% ----------CQPELAVTSDGRTIVCYHPSKPFPYEHTKPLPpldhmslevyyqedilkltfKEQtkehlsGPDNKKLEQMFFIHENKWWGSSKV--RLR KSNEPKDR >UniRef50_Q1WCJ2(43-128:128) Mitochondrial 28S ribosomal protein S32-like (Fragment) n=1 Tax=Ictalurus punctatus RepID=Q1WCJ2_ICTPU E=1e-12 s/c=0.86 id=63% cov=63% ------------VNLGVTRDGETIVCFHPAPDIAYELTKPIPipdptldtaethdlvlksqlnkdilkGKKAPAIEELAKMFYTTKHRW----------- -------- >UniRef50_C4PZE4(36-127:130) Mitochondrial 28S ribosomal protein S32 (S32mt) (MRP-S32), putative n=1 Tax=Schistosoma mansoni RepID=C4PZE4_SCHMA E=4e-08 s/c=0.64 id=43% cov=79% --------------ITLSPDGAVVVCWHPVRKVPYECTKPIShdikslrtptsplkinvsdtiikNSAEPTVVELSKAFGVP---WF-HFRPKRSQKSRS pyfwaPPKER # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1225 0 0 Y 2 * * * * * * * * * * * * * * * * * * * 0 2 0 * * * * * * 1225 0 0 S 3 562 * * * * * * * * * * * * * * 1631 * * * * 3 0 * * * * * * 1300 0 0 P 4 2538 * * * * * * * * * * * 631 * * * * 2456 * * 4 0 * * * * * * 1518 0 0 L 5 * * * * 2456 * * * * 1593 * * * * * 1040 * * * * 5 0 * * * * * * 1518 0 0 P 6 * * * * * * * 1258 * 1576 * * 2020 * * * * * * * 6 0 * * * * * * 1592 0 0 D 7 * * 542 2561 * * * * * * * 2800 * * * * * * * * 7 0 * * * * * * 1592 0 0 D 8 * * 0 * * * * * * * * * * * * * * * * * 8 195 * 2986 * * * * 1592 0 0 Y 9 * 2471 * * * * * * * * * * 1403 * * * * * * 1179 9 0 * * * * 0 * 1581 0 1000 N 10 * * 2033 * * * 2926 * * * * 1018 * * * * * * * 2941 10 0 * * * * * * 1595 0 0 C 11 * 138 * * * * * * * * * * * * * 3451 * * * * 11 0 * * * * * * 2132 0 0 N 12 * * * * * * * * 1723 * * 1981 * 2108 * 2240 * * * * 12 0 * * * * * * 2132 0 0 V 13 2588 * * 4304 * * * * * * * * 1999 * * * * 908 * * 13 0 * * * * * * 2278 0 0 E 14 * * * 812 * * * * 2011 * * 2456 * * * * * * * * 14 0 * * * * * * 2549 0 0 L 15 * * * * * * * 1128 * 1594 * * * * * * * 2243 * * 15 0 * * * * * * 2855 0 0 A 16 1335 * * * * 2737 * * * * * * * * * * 2570 1810 * * 16 0 * * * * * * 2855 0 0 L 17 * * * * * * * 3564 * 1930 3180 * * * * * * 882 * * 17 0 * * * * * * 2855 0 0 T 18 * 3642 * * 3977 * * 5106 * * * * * * * 3391 450 * * * 18 0 * * * * * * 2855 0 0 S 19 3642 * 2220 * * * * * 2931 * 3977 * 3391 * 4575 1599 * * * 4534 19 0 * * * * * * 2855 0 0 D 20 * * 463 * * * * * * * * 1864 * * * * * * * * 20 0 * * * * * * 2855 0 0 G 21 4364 * * 3520 * 445 * * * * * 4050 * * * 3850 * * * * 21 118 * 3669 * * * * 2854 0 0 R 22 4292 * * 3196 * 4354 * * 2298 * * 4581 * 4819 1797 2167 * * * * 22 0 * * * * 0 * 2727 0 1000 T 23 * * * * * * * * * * 4110 * * * * * 412 2391 * * 23 0 * * * * * * 2898 0 0 I 24 * * * * 4848 * * 446 * * * * * * * * * 2749 * 3602 24 0 * * * * * * 2898 0 0 V 25 3115 * * * * * * * * * * * * * * * * 177 * * 25 0 * * * * * * 2898 0 0 C 26 1735 516 * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 2898 0 0 Y 27 * * * * 3711 * 4790 * * * * * * * * * * * 819 1641 27 0 * * * * * * 2898 0 0 H 28 * * * * * * 0 * * * * * * * * * * * * * 28 0 * * * * * * 2898 0 0 P 29 * * * * * * 5130 * * * * * 42 * * * * * * * 29 0 * * * * * * 2898 0 0 S 30 3152 * 4504 1575 * * * * 3602 * * * 3993 * * 1868 * 3495 * * 30 0 * * * * * * 2898 0 0 V 31 * * 4733 3339 * * * * 3675 * * * 3766 2300 2823 4422 2709 2575 * * 31 0 * * * * * * 2898 0 0 D 32 3708 * 1493 4826 * * 3993 * 3495 * * * 3031 * * 2587 3432 * * * 32 0 * * * * * * 2898 0 0 I 33 * * * * 1024 * * 2887 * * * * * * * * * 1709 * 3897 33 0 * * * * * * 2898 0 0 P 34 4689 * * * * * * * * * * * 101 * * 5130 * * * * 34 0 * * * * * * 2898 0 0 Y 35 * * * * * * * * * * * * * * * * * * * 0 35 0 * * * * * * 2898 0 0 E 36 * * * 59 * * * * 4644 * * * * * * * * * * * 36 0 * * * * * * 2898 0 0 H 37 * 1688 * * 4949 * 1315 * * 2794 3897 4504 * * * * * * * * 37 0 * * * * * * 2898 0 0 T 38 * * * * * * * * * * * * * * * 1791 492 * * * 38 0 * * * * * * 2898 0 0 K 39 * * * * * * * * 581 4504 * * * 1799 * * * * * * 39 0 * * * * * * 2898 0 0 P 40 * * * * * * * * * * * * 0 * * * * * * * 40 0 * * * * * * 2928 0 0 I 41 * * * * * * * 907 * 1100 * * * * * * * * * * 41 102 3867 * 4644 59 * * 2928 1000 0 P 42 * * 3092 3795 * * * * * 4944 * * 629 * * 3421 * 4713 * * 42 637 1485 * 4261 77 * * 2928 2281 0 R 43 * * * 3588 * 4589 * * 1654 3092 * 4388 * 3673 1899 * * 4441 * * 43 645 1473 * 4390 71 * * 2928 2019 0 E 44 * * * 2211 * * * * 1501 * * 3594 3966 4569 3265 2859 * * * * 44 0 * * * * * * 2928 0 0 E 45 3421 * * 3560 * * * * 1539 * * * 3367 2063 3966 4827 4569 * * * 45 282 2491 * 3808 107 * * 2928 1869 0 G 46 2783 * 3867 1976 * 1834 3644 * * * * * * * * 4569 4540 3536 * * 46 0 * * * * * * 2928 0 0 P 47 4569 * * 4638 * * * * * 3867 * * 396 3490 * * * * * * 47 52 4827 * 4459 67 * * 2928 1000 0 M 48 4589 * 2575 2829 * * * * * 4540 3762 * * * 4231 4764 2099 2253 * * 48 0 * * * * * * 2928 0 0 I 49 * * * * * * * 1730 4786 * * 2030 * * 3269 4042 2996 2969 * * 49 307 2385 * 4185 82 * * 2928 1794 0 E 50 3330 * * 1366 * * * * 3015 * * * 4540 2328 * * * 3421 * 4231 50 117 3687 * 3615 123 * * 2928 1077 0 Q 51 * * * 418 * * * 4231 3616 * * * * 3099 * * * * * * 51 0 * * * * * * 2928 0 0 L 52 * * * * * * * * * 0 * * * * * * * * * * 52 0 * * * * * * 2928 0 0 S 53 4589 * * 3616 * 4042 * * 3225 * 2328 * * * 4231 1131 * * * * 53 0 * * * * * * 2928 0 0 K 54 3867 * 3966 3377 * * * * 878 * * 4638 * 2988 4042 * * * * * 54 0 * * * * * * 2928 0 0 M 55 3421 * * * * * * 2197 * 2391 1405 * * * * * * 3054 * * 55 0 * * * * * * 2928 0 0 F 56 * * * * 673 * * * * * * * * * * * 1424 * * * 56 63 4540 * 4000 93 * * 2928 1000 0 F 57 * * * * 1941 3421 1707 * * * * * * * * * * * * 1557 57 0 * * * * * * 2928 0 0 T 58 * * * * * * * 3616 * * * * * * * 3867 402 3421 * * 58 0 * * * * * * 2928 0 0 T 59 * 4042 * * * 4231 3616 * * * * * 3421 3867 * 3966 789 * * * 59 141 * 3421 * * * * 2928 0 0 K 60 * * * 3531 * * * * 131 * * * * * * * * * * * 60 0 * * * * * 0 2796 0 1072 H 61 * * * * * * 131 * * * * 3531 * * * * * * * * 61 0 * * * * * 0 2796 0 1072 R 62 * * * 2954 * * * * 3531 * * * * 4654 586 * * 3674 * * 62 0 * * * * 0 * 2796 0 1072 W 63 * * * * * * * * * * * * * * * * * * 0 * 63 0 * * * * * * 2928 0 0 Y 64 * * * * 1075 * * * * * * * * * * * * 4458 3602 1331 64 147 * 3365 * * * * 2982 0 0 P 65 * * * * * 3403 * * * * * * 375 * * 3908 3888 * * * 65 0 * * * * 0 * 2778 0 1072 H 66 * * * * * * 2502 * 3955 * * * 3125 * 1441 3602 * 2368 * * 66 0 * * * * * * 2982 0 0 G 67 1697 * * * 3365 1872 * * 3125 * * * * * * 3602 3909 * * 4113 67 103 * 3854 * * * * 2982 0 0 R 68 * * * * * * * * 2855 * * * * 1978 718 * * * * * 68 0 * * * * * 0 2868 0 1000 Y 69 * * 1918 2936 4486 * * * * * * * 3250 * * 3872 * 3533 4271 2009 69 130 * 3533 * * 0 * 2868 0 1000 H 70 * * * 2871 3744 * 1739 * 1363 * * * * * 3314 * * * * * 70 0 * * * * * 0 2862 0 1000 R 71 * * * * * * * 4644 2037 * * 4439 * 3089 958 * 4717 * * * 71 0 * * * * 0 * 2862 0 1000 C 72 2002 4694 * * 3714 * * * * 2960 * * * * 1554 3305 * * * 3941 72 0 * * * * * * 2964 0 0 R 73 * * * * * * * * 1667 3403 * * * 2799 1162 * * * * * 73 0 * * * * * * 2964 0 0 K 74 * * * * * * * * 1192 * 4473 2974 * 4394 1863 3887 * * * * 74 0 * * * * * * 2961 0 0 N 75 * * * * * * * * 1325 * * 4447 * * * 4210 1442 2911 * * 75 430 * 1955 * * * * 2961 0 0 L 76 2483 * * 3271 * 4215 * * 3067 3062 * * * 3088 2378 3125 * * * * 76 0 * * * * * 0 2846 0 1598 N 77 2283 * 2020 * * * * * * * * 1972 * 2897 * 2655 * * * * 77 124 3598 * 2322 322 * 0 2702 1000 1598 P 78 * * * 3009 * * * * * * * * 191 * * * * * * * 78 162 3234 * 0 * 0 * 2702 1000 1598 P 79 * * * 3398 * * * * * * * * 144 * * * * * * * 79 0 * * * * * * 2711 0 0 K 80 * * * * * * * * 533 * 1695 * * * * * * * * * 80 0 * * * * * * 2711 0 0 D 81 * * 302 3482 * * * * * * * * * * 3333 * * * * * 81 0 * * * * * * 2711 0 0 R 82 * * * * * * * * * * * * * * 0 * * * * * 82 0 * * 0 * * * 2711 0 0 //