HHsearch 1.5 NAME c5ommC_ FAM FILE c5ommC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ommC_.a3m DATE Sat Oct 7 08:24:05 2017 LENG 93 match states, 93 columns in multiple alignment FILT 104 out of 337 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4519 -0.1243 SEQ >ss_dssp CCCCBCCCCCCCCBCCCCSEEEEEECCEEEEEETTCCEEECTTTBTTEEEEEETTTTEEEEEECCTTCCEEEECCEETTEECCCBCCCBCCCC >sa_dssp ECCBCBEEEECDBDEEECDDCBBCCEDDBBCBCEEDDDCDCEEACECBDBDCDEECDCBBBCDEDEDCDBCACBDDEEEEDEDCEBDCCDCEE >ss_pred CCCCCCCEEEEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCCCCCEEECCCEEEEC >ss_conf 941673159999996054048888553002221367652256688429999527831899990587547998664057745416628869859 >Consensus xvxxxxxxvxlsCxxSgxxxxxWyrQxxxxxxxxxxxxxxxxxxxxRfsxsxdxsxxxxxLxixxDsAxYyCaxxxxxxxxxxxfGxGTxLtV >c5ommC_ QVQLQESLVRLSCAASSMHVVGWYRQELVASITDDGSTDYVDSVKGRFTISRDIAENTVYLQMNNPEDVYYCKGIVVFTTPMHYWGKGTQVTV >UniRef50_UPI0000F2C799(89-186:341) PREDICTED: similar to T-cell receptor delta chain n=7 Tax=Monodelphis domestica RepID=UPI0000F2C799 E=5e-05 s/c=0.50 id=23% cov=92% --------LSLKCQTSGFQFKTSQLDWYLWTPGHAPlwltglNSSSTDATEGRITSSREDNKNQIFLQIEdlglRDSGQYHCARRVGNGDDTDklVFGLG TRVIV >UniRef50_UPI000066128D(30-114:117) UPI000066128D related cluster n=13 Tax=Takifugu rubripes RepID=UPI000066128D E=2e-05 s/c=0.59 id=25% cov=56% ----------------------WYKQdgtsrpQFILSRFKGDTGKTEDEFKERFSSTLNSTMKSAPLKIQelqlSDSAVYYCA----------------- --- >UniRef50_UPI00005A4A52(29-105:259) PREDICTED: similar to Ig lambda chain V-I region BL2 precursor n=2 Tax=Canis lupus familiaris RepID=UPI00005A4A52 E=6e-07 s/c=0.72 id=23% cov=70% ---------RLTCTLSSGFNMWGYHIFWYQQKPGSPPRYLLNFYSDKHQGSKDTSANAGILLIsglqPEDEADYYCK-------------------- >UniRef50_UPI0000D9BE41(139-219:219) PREDICTED: similar to Ig heavy chain V-I region HG3 precursor n=3 Tax=Eutheria RepID=UPI0000D9BE41 E=4e-13 s/c=0.93 id=26% cov=84% EVRKPEASVKVSYKASGYTFTSYNIHWMGGIYPCNGNTGYAQKFQGRVTMTKDMSMSTAYMELSSlrseDTAVYYCVRHTV---------------- >UniRef50_UPI00006A204F(145-229:229) UPI00006A204F related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A204F E=4e-06 s/c=0.62 id=27% cov=68% ----------LQCEVSGYNIndhhMHWVRQapgagtlEWLAAFKTGDTTYIAESLKDRVTPSTSGSTAQLRINRlsSSDTATYYC--------------- ------ >UniRef50_UPI0000ECCF4F(32-133:239) UPI0000ECCF4F related cluster n=2 Tax=Gallus gallus RepID=UPI0000ECCF4F E=7e-11 s/c=0.67 id=23% cov=98% ---VEGSSVTMTCQLSSGTVVHWYRQlpgeppKRILYMSGYSPTFDDSNDRQKIQVQRNPSNSVLIIKKttQRDTGTYYCAYWYRQGftalAWIKYFGTG TKLIV >UniRef50_UPI0000EB05A3(34-128:147) UPI0000EB05A3 related cluster n=3 Tax=Canis lupus familiaris RepID=UPI0000EB05A3 E=5e-06 s/c=0.55 id=26% cov=88% -----ETSVKLTCTLSSEHSSYYIYWyqqqqpgkapRYLMKVNSDGSHSRGDGIPSRFSGSSSGADRYLTISniQSEDEADYYCGVPAGSSSHSDTdkWG ------- >UniRef50_A2NU23(28-129:135) D-beta 1.1/J-beta 2.3 segment (Fragment) n=3 Tax=Mus musculus RepID=A2NU23_MOUSE E=3e-05 s/c=0.49 id=18% cov=101% EIKAVGSPLSLGCTIKGKSSpnLYWYWQATGGTLQQLFYSITVGQVESVVQLNLSASrpkDDQFILSteklLLSHSGFYLCAWSPQGAAETLYFGSGTRL TV >UniRef50_UPI00006A0EF6(40-137:140) T-cell receptor alpha chain V region PY14 precursor. n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A0EF6 E=0.0009 s/c=0.46 id=22% cov=95% ----QENILVCTYSSSSSYpCLYWYRQYPnsplqfiLRRPGTSAACTRKQAEGfDRFDAVADTSSTRMTITSleLSDMAMYYCAV-TDFHTGKNTFGDGT KLS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 742 * * * * * * * * * 1314 * * * * * * 1 0 * * * * * * 3477 0 0 V 2 * * * * * * * 3133 * * * * * * * * 3470 330 * * 2 0 * * * * * * 3754 0 0 Q 3 2483 * * * * * * * 1542 * * * * 1963 2629 * 4069 * * * 3 0 * * * * * * 3754 0 0 L 4 2564 * * * * * * * 2697 1406 * * 3289 * 4004 * * 2892 * * 4 0 * * * * * * 4011 0 0 Q 5 * * * 2152 * * * * 5356 * * * 2907 1432 2958 3950 * 4231 * * 5 0 * * * * * * 5190 0 0 E 6 * * 4527 1532 * 1494 * * * * * * * 3487 4811 4410 3573 * * * 6 69 4419 * 1585 585 * * 5322 1154 0 S 7 2303 * 4937 2726 * * * * * * * 3930 * * * 1436 3084 4047 * * 7 130 3533 * 2813 221 * * 5520 2019 0 L 8 * * * * 4621 4542 * 3024 * 2825 4612 5037 4640 * * 1838 2302 4093 * * 8 47 * 4949 * * * * 5520 0 0 V 9 5509 * * * 4951 * * 4061 * 1791 * * * * * 6717 * 767 * * 9 0 * * * * 0 * 6194 0 1000 R 10 * * * 5650 * * 4669 * 2095 * * 5803 * 4357 2474 3238 1651 5617 * 6051 10 54 5143 6843 2585 263 * * 6292 1576 0 L 11 * 3552 * * 4895 * * 2036 * 937 4245 * * * 6736 * * 4243 * * 11 0 * * * * 0 * 6478 0 1000 S 12 5644 * 6371 5866 4992 4938 5956 * 4579 6953 * 4370 4487 5083 6201 1367 1856 5589 * * 12 19 * 6256 * * * * 6471 0 0 C 13 * 82 * * * * * * * * 5548 * * * * * * * * 4887 13 73 4350 * 1669 545 0 * 6472 2039 1000 A 14 4496 * 6615 5099 * 4317 4562 5479 1960 * * * 6258 3452 3750 2634 2290 * * * 14 77 4262 * 809 1221 * * 6484 2152 0 A 15 2669 * 5855 5358 4666 3379 * 4058 5637 3298 4796 * * 4631 6563 3970 2968 2654 * 4432 15 48 4928 * 1715 524 * * 6484 1969 0 S 16 6239 * 3990 6240 * * * 5557 5834 * * 5021 * 5604 6322 510 3553 * * 5590 16 179 3100 * 1681 539 * * 6484 3832 0 S 17 6320 * 6386 6122 * 769 * * * * * 5385 * 5758 * 1912 4308 * * 5985 17 157 3278 * 2244 342 * * 6501 3507 0 M 18 5786 * 4178 5280 2364 3738 4669 4373 5911 5172 5867 3750 * 6409 * 2490 6511 5040 * 2496 18 179 3099 * 2000 415 * * 6501 3467 0 H 19 5353 * 4549 * 5683 4978 3976 4322 * 5053 * 3108 6457 4471 6366 2523 2568 6375 * 2331 19 125 3872 6085 979 1021 * * 6499 3244 0 V 20 3887 5849 5454 6123 2145 4943 5727 4459 * 5460 5860 5617 * 4776 5962 3554 6836 3583 5867 2014 20 225 2793 * 1933 438 0 * 6484 4011 1000 V 21 6518 * * * 5044 4982 * 3183 5619 2470 1938 * * * * 5475 3151 2327 7013 6257 21 57 4693 * 2066 394 * * 6499 2436 0 G 22 4664 * 4630 7228 4044 4454 2176 5455 * 5869 6153 3719 * 5225 6712 2505 4263 * 5065 2629 22 53 4788 * 2000 415 * * 6499 2186 0 W 23 * * * * 5106 5699 * * * 6482 * * * * * 5637 * * 224 3967 23 20 * 6183 * * * * 6507 0 0 Y 24 * * * * 3977 6179 6434 2845 * 4507 * 6051 * 5627 * * * 3475 * 730 24 0 * * * * 0 * 6477 0 1000 R 25 * * * * * * 5002 5414 4367 3663 5549 * * 2027 990 * * * 4827 6342 25 47 4971 * 1829 477 * * 6507 1678 0 Q 26 * * 5637 6680 * * 4278 5699 4517 6771 * 6872 * 370 6442 * 6199 6383 5215 * 26 884 1173 6102 2564 267 * * 6507 5045 0 E 27 5139 * 4385 1623 5025 4864 4860 * 2328 6712 * * * 3558 4190 4747 5493 5964 4081 5915 27 108 4381 5372 2585 263 * 0 6482 2607 1000 L 28 5705 * * * 3315 4942 5623 * * 3796 5342 5600 2613 6647 4013 4778 4514 4383 1929 3571 28 78 4707 6140 2071 392 1523 617 6444 2134 2315 V 29 5837 * * 6278 * 2121 * 2637 * 1758 4232 4626 6266 * 5669 * 5558 3308 * 4841 29 14 6736 * 2807 222 559 1637 6416 1000 2238 A 30 3540 * * 5503 6760 1760 * 5473 5144 2948 4682 * * 2741 3611 3879 5717 5087 5620 * 30 39 5225 * 2696 242 * 0 6474 1721 1000 S 31 2926 * 6606 * 7121 3886 4573 5251 6331 3191 * * 6872 4794 3139 2539 3604 4751 6374 2928 31 29 5647 * 1381 699 * 0 6474 1452 1000 I 32 * 6614 * * 3949 7064 4556 1724 5266 3996 3626 * 1755 * 6972 * 6280 4118 * 5154 32 137 3460 * 2359 313 0 * 6474 3573 1000 T 33 4317 * 4982 5249 6180 3254 4562 5616 4046 6137 * 3402 4871 3745 2998 3449 4929 3877 4496 3826 33 248 2663 * 1402 686 * * 6507 4079 0 D 34 5051 6066 5718 4596 6474 3834 3734 3043 4593 5228 * 4420 3994 5306 * 2855 3319 4450 6859 3045 34 57 4695 * 1540 608 * * 6507 2427 0 D 35 4979 * 2624 5891 4983 3975 6296 * * 3929 * 2797 6501 4885 5176 2242 3988 6370 * 3148 35 30 6199 7233 3459 138 * * 6507 1000 0 G 36 3025 * 3479 4825 4433 2040 * * 4970 * 6926 5103 4667 5229 * 3078 5066 4029 6550 3220 36 55 4750 * 1967 426 0 * 6510 2094 1000 S 37 3421 * 4009 4828 * 3990 * 5484 4607 4991 6104 3380 3712 * 4896 2314 2903 5445 * 3769 37 21 6101 * 0 * * * 6507 1474 0 T 38 3901 5937 4130 5192 6569 4778 4980 3826 4607 6105 * 4862 3978 5432 4481 3057 1898 3769 * * 38 21 6089 * 0 * * * 6508 1817 0 D 39 4679 * 3501 3597 5140 4787 4582 4009 5127 * * 4113 * 4023 4387 2717 3627 4696 * 2697 39 44 6875 5550 0 * * * 6508 1000 0 Y 40 4874 6673 4561 5475 5021 * * 4785 4829 4011 * 4493 5846 5655 2732 4817 4252 4144 * 1513 40 12 6869 * 1585 585 * 0 6474 1000 1690 V 41 2233 * 4922 3844 6088 2738 6547 * 3187 4462 * 3178 4666 5265 * 3252 5616 4907 * 5668 41 16 6466 * 2000 415 * 0 6474 1000 1690 D 42 5035 * 2383 3937 * 3813 * * 4706 7106 * 4021 2659 3379 * 2386 3647 * * 6877 42 15 * 6622 * * * 0 6732 0 1690 S 43 3527 * 3118 4312 4876 2343 * 6973 3241 * 6389 3802 * 5147 6437 2297 4015 * 6144 * 43 39 6352 6144 1000 1000 * 0 6546 1000 2006 V 44 6189 * 4411 5304 2182 * * 3251 5356 3071 6018 5134 4666 6332 * 6653 5040 1847 * 5001 44 40 5190 * 1664 547 431 1953 6770 1612 2369 K 45 5142 * 4319 2855 * 6110 4895 * 1607 * * 5368 2588 3610 5032 3364 7166 * * * 45 21 6110 * 0 * 0 * 6788 1000 1000 G 46 6888 * 2344 4289 * 1507 * * 5153 * * 5021 * 4637 4319 2232 5789 6440 * * 46 40 5206 * 1319 739 * * 6806 1678 0 R 47 * * * 5353 * 4929 5459 * 2975 7261 * 6106 * 5514 487 6883 6273 6080 * * 47 0 * * * * * * 6649 0 0 F 48 4530 6860 * * 956 * 5672 3028 * 3144 * 6273 * * * 6217 * 3434 * 4100 48 22 * 6049 * * * * 6649 0 0 T 49 4978 * 4388 3752 * * 6844 3959 4859 6271 * 7552 * 3689 5108 1742 1890 4926 6321 * 49 15 6571 * 1585 585 0 * 6606 1000 1000 I 50 2722 * * 6285 3667 2166 * 2739 * 3594 4733 * 3803 6422 6395 3959 * 3261 * * 50 25 7059 6712 1585 585 * * 6649 1000 0 S 51 5524 * 4323 4011 * * 5194 6553 5773 6038 5177 4770 * 5866 5087 1264 1981 6137 * * 51 50 7322 5183 1585 585 0 * 6646 1000 1000 R 52 4316 7594 * 6332 5700 4814 * 3505 2571 3067 6407 * 6585 * 1552 4774 4888 3876 * * 52 14 * 6660 * * 1325 735 6652 0 1785 D 53 7153 * 1060 3464 * * 6879 * 5608 * * 2702 4187 5596 6735 3139 5268 * 6008 * 53 15 6552 * 1585 585 0 * 6654 1000 1830 I 54 4070 * 3786 4368 4713 2853 * 4382 3882 7168 5291 3046 5903 * 5363 2931 2310 * * * 54 8 7561 * 0 * * * 6649 1000 0 A 55 2912 * 4900 6277 * 4648 7059 * 4416 5432 * 4043 5573 5383 5674 1015 3711 7168 * * 55 38 6080 6497 1585 585 * * 6649 1000 0 E 56 4600 * 3654 3813 6369 4992 5832 6728 2480 6188 5415 3301 * 4179 4351 2667 3038 5273 * 6559 56 36 6402 6265 0 * 945 1058 6653 1000 1608 N 57 4189 * 6056 6701 5595 5231 * * 4854 5035 * 1605 * 6991 5167 1638 4203 5258 * 4578 57 44 5572 6757 1127 884 1017 983 6635 1491 1650 T 58 3494 * 4488 4838 * 4481 4073 5512 5162 4940 5161 6033 * 2983 6111 3151 1949 3705 * 6308 58 0 * * * * 0 * 6626 0 1717 V 59 2635 6371 6182 6896 3033 4834 5779 4060 * 1787 5507 * * 6353 * 4014 4920 2935 * 5657 59 0 * * * * * * 6649 0 0 Y 60 6775 * 6714 6712 3202 6586 5938 3360 5669 4737 6217 4756 5758 * 6335 2905 2160 4690 6332 2380 60 0 * * * * * * 6649 0 0 L 61 * * 5245 * 6760 6049 6029 2222 * 778 3684 * * * * 6353 5669 5226 * * 61 14 6740 * 1000 1000 * * 6649 1000 0 Q 62 5024 * 6375 3840 * * 4741 3632 3234 3672 * 5013 * 2185 5522 2784 2766 5669 * * 62 136 3572 7375 1345 722 * * 6649 3547 0 M 63 6298 * * * 5696 3665 * 1460 3837 2073 3706 * 6425 3772 5668 5258 * 6545 * * 63 448 2000 5872 1535 610 0 * 6655 4437 1000 N 64 4191 * 5449 4322 6275 5956 6147 * 3832 3937 * 2755 3277 4324 2937 2762 3544 5882 * 6412 64 450 1900 * 1982 421 0 * 6645 4973 1707 N 65 5264 * 5873 1938 * 5389 * * * * * 2610 * 5331 3372 1536 4573 * * * 65 431 1952 * 1914 445 * * 6649 4663 0 P 66 6583 * 291 6760 * * 5118 * * 4018 * * 4411 * * 7083 6739 6849 * * 66 12 6902 * 1000 1000 * * 6649 1000 0 E 67 4676 * 5907 2225 * * 6957 7204 4542 6819 5263 4991 * * 7438 1502 2225 4898 * * 67 66 4484 * 2096 384 * * 6649 2450 0 D 68 576 * 3631 * * 2199 * * * * * 6010 * * * 6043 * * * * 68 86 4117 * 1650 553 * * 6649 2740 0 V 69 6739 * 3567 6485 4790 * 5450 3888 * 4090 4429 * * 5625 5078 5470 1915 1688 * 6029 69 41 5167 * 1000 1000 * * 6649 1933 0 Y 70 * * * * 5364 * * 5669 * * * * * * * * * 6456 * 82 70 0 * * * * * * 6649 0 0 Y 71 * * * * 2126 * 4412 6001 * 3595 * * * * * * 6182 * * 709 71 0 * * * * * * 6649 0 0 C 72 * 0 * * * * * * * * * * * * * * * * * * 72 22 6015 * 0 * * * 6649 1000 0 K 73 733 6457 * * * 3764 * * 5227 * 6485 * * 3525 * 3867 4387 3787 * * 73 59 5885 5425 2585 263 * * 6620 1000 0 G 74 3757 * * * * 5633 * 4795 3697 6001 4803 6166 6151 4493 1913 2676 4549 2742 4967 5462 74 101 4675 5142 1873 460 * 0 6515 2096 1582 I 75 5578 * 3836 * 3959 3788 3798 4584 5817 4215 * * 6024 * 3433 2025 4607 5448 3209 4026 75 68 5181 5743 2362 312 1943 435 6824 1549 2285 V 76 3901 5712 3571 3502 5354 4601 4314 5247 4544 4372 4360 * 5525 5912 5721 3337 2376 3885 * 4539 76 111 4262 5503 2737 234 987 1013 6854 2128 2423 V 77 * 5080 3521 5929 5354 2149 3746 5612 5878 * 4997 3706 * 5523 4699 3159 4980 2908 6038 4485 77 17 6402 * 0 * 2030 405 6887 1000 2262 F 78 4377 * 4528 * 3679 2538 * 6190 * 4061 * 4322 5167 5453 4315 2456 4757 5658 5088 2598 78 118 4247 5273 822 1203 * 0 6849 1941 2064 T 79 3159 * 3815 4694 6090 1830 4948 * 6118 5724 * 3272 5237 * * 2764 3440 * * 4401 79 149 4137 4608 1068 935 358 2186 6878 2463 2846 T 80 3179 * 5225 5393 6155 6693 6246 * * 4145 * 2856 * 4785 4224 2897 2254 4948 * 2822 80 61 5281 5984 2000 415 1909 447 6814 1110 2307 P 81 3103 * 2216 4019 5456 3164 5826 6268 * * * 4968 3428 * 4775 4905 3823 * 3814 3249 81 213 4254 3562 1348 720 1005 995 6666 2265 2250 M 82 5120 * 4356 4308 3555 5167 * 3972 3115 2795 3575 5535 3485 5251 5588 5087 3489 4062 * 6000 82 72 4809 6298 1330 732 1855 467 6611 1741 2922 H 83 3703 4777 2039 4646 5911 4490 6219 * 3414 2356 * 3733 5853 4405 * 5101 * 4702 6021 5867 83 114 3719 * 638 1484 264 2582 6631 2535 2939 Y 84 * * * * 4085 * * 3200 * 5774 5472 6535 * 4601 5859 5899 2450 2114 * 1779 84 91 4551 5745 1247 789 0 * 6675 2045 1000 W 85 * * 5354 * 700 * * * * * * * * * * * * 5801 1648 5444 85 28 5683 * 1000 1000 0 * 6554 1000 1000 G 86 4876 * * * * 84 * * 5484 * * * * * * * * * * * 86 0 * * * * * * 6571 0 0 K 87 5199 5356 4726 3268 * 3090 5724 * 4315 5236 * * 2472 3164 4804 2282 4049 * * * 87 0 * * * * * * 6425 0 0 G 88 4706 * * * * 56 * * * * * * * * * * * * * * 88 0 * * * * * * 6415 0 0 T 89 * * * * * * * 5528 * 4547 * * * * * 6275 116 * * * 89 0 * * * * * * 6253 0 0 Q 90 6507 * * 4405 3314 * 5699 5615 2368 3018 5131 5517 5938 3916 2191 4372 4411 4749 * * 90 0 * * * * * * 6225 0 0 V 91 * * * * * * * * * 603 * * * * * * * 1549 * * 91 0 * * * * * * 6208 0 0 T 92 5377 * 5969 * * * 5085 3139 * 3890 5711 5486 * * 4246 3111 935 * * 5905 92 0 * * * * * * 6218 0 0 V 93 * * * * * * * * * * * * * * * * * 0 * * 93 0 * * 0 * * * 6207 0 0 //