HHsearch 1.5 NAME c5o6aE_ FAM FILE c5o6aE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5o6aE_.a3m DATE Sat Feb 10 08:26:33 2018 LENG 71 match states, 71 columns in multiple alignment FILT 3 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.6 EVD 0.4175 -0.3290 SEQ >ss_dssp CCCCCSTTTCCCCSSCCSCTTHHHHTHHHHHHHHHHHCHHHHTTTHHHHTTTTCCHHHHHHHHHHHHHHCC >sa_dssp EEEEEEDEDEEEEEEEEEEEDDDEEDDEEDCEDDDEEDEEEDEDCDDCCEEEDECEEDBEECCEDDDEECE >ss_pred CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 92553011101100254214145899998887777655899999999999999868999999999986089 >Consensus VlIPsHAQxdltGRGHxWLeGdxxrxHlTRVEGWvWKNkLltlaxVxvaWLmvdsxxxRvxvxvvaLxLxP >c5o6aE_ VLIPSHAQGELTGRGHKWLEGDSLRTHLTRVEGWVWKNRLLALAMVTVVWLTLESVVTRVAVLVVLLCLAP >UniRef50_Q04538(205-275:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=1e-25 s/c=1.65 id=53% cov=101% VVIPTHAQKDMVGRGHAWLKGDNIRDHVTRVEGWMWKNKLLTAAIVALAWLMVDSWMARVTVILLALSLGP >UniRef50_P29838(207-277:776) Envelope protein E (Fragment) n=153 Tax=Flavivirus RepID=POLG_LANVY E=4e-25 s/c=1.62 id=58% cov=101% VLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALVP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * * * * * * * * * * * 0 * * 1 0 * * * * * * 1568 0 0 L 2 * * * * * * * * * 603 * * * * * * * 1550 * * 2 0 * * * * * * 1568 0 0 I 3 * * * * * * * 0 * * * * * * * * * * * * 3 0 * * * * * * 1568 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1568 0 0 S 5 * * * * * * * * * * * * * * * 603 1550 * * * 5 0 * * * * * * 1568 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 1568 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1568 0 0 Q 8 * * * * * * * * * * * * * 0 * * * * * * 8 0 * * * * * * 1568 0 0 G 9 * * * * * 1595 * * 1550 * * * * * 1611 * * * * * 9 0 * * * * * * 1568 0 0 E 10 * * 580 1595 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1568 0 0 L 11 * * * * * * * * * 603 1550 * * * * * * * * * 11 0 * * * * * * 1568 0 0 T 12 * * * * * * * * * * * * * * * * 603 1550 * * 12 0 * * * * * * 1568 0 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 1568 0 0 R 14 * * * * * * * * * * * * * * 0 * * * * * 14 0 * * * * * * 1568 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1568 0 0 H 16 * * * * * * 0 * * * * * * * * * * * * * 16 0 * * * * * * 1568 0 0 K 17 1550 * * * * * * * 1595 * * * * 1611 * * * * * * 17 0 * * * * * * 1568 0 0 W 18 * * * * * * * * * * * * * * * * * * 0 * 18 0 * * * * * * 1568 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 1568 0 0 E 20 * * * 603 * * * * 1550 * * * * * * * * * * * 20 0 * * * * * * 1568 0 0 G 21 * * * * * 0 * * * * * * * * * * * * * * 21 0 * * * * * * 1568 0 0 D 22 * * 572 1611 * * * * * * * * * * * * * * * * 22 0 * * * * * * 1568 0 0 S 23 1611 * * * * * * * * * * 1550 * * * 1595 * * * * 23 0 * * * * * * 1568 0 0 L 24 * * * * * * * 1550 * 1595 * * * * * * * 1611 * * 24 0 * * * * * * 1568 0 0 R 25 * * * * * * * * 1611 * * * * * 572 * * * * * 25 0 * * * * * * 1568 0 0 T 26 1611 * 1550 * * * * * * * * * * * * * 1595 * * * 26 0 * * * * * * 1568 0 0 H 27 * * * * * * 0 * * * * * * * * * * * * * 27 0 * * * * * * 1568 0 0 L 28 * * * * * * * * * 603 * * * * * * * 1550 * * 28 0 * * * * * * 1568 0 0 T 29 * * * * * * * * * * * * * * * * 0 * * * 29 0 * * * * * * 1568 0 0 R 30 * * * * * * * * * * * * * * 0 * * * * * 30 0 * * * * * * 1568 0 0 V 31 * * * * * * * * * * * * * * * * * 0 * * 31 0 * * * * * * 1568 0 0 E 32 * * * 0 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1568 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 1568 0 0 W 34 * * * * * * * * * * * * * * * * * * 0 * 34 0 * * * * * * 1568 0 0 V 35 * * * * * * * * * * 1550 * * * * * * 603 * * 35 0 * * * * * * 1568 0 0 W 36 * * * * * * * * * * * * * * * * * * 0 * 36 0 * * * * * * 1568 0 0 K 37 * * * * * * * * 0 * * * * * * * * * * * 37 0 * * * * * * 1568 0 0 N 38 * * * * * * * * * * * 0 * * * * * * * * 38 0 * * * * * * 1568 0 0 R 39 * * * * * * * * 580 * * * * * 1595 * * * * * 39 0 * * * * * * 1568 0 0 L 40 * * * * * * * * * 0 * * * * * * * * * * 40 0 * * * * * * 1568 0 0 L 41 * * * * 1611 * * * * 572 * * * * * * * * * * 41 0 * * * * * * 1568 0 0 A 42 1595 * * * * * * * * * * * * * * * 580 * * * 42 0 * * * * * * 1568 0 0 L 43 1550 * * * * * * * * 603 * * * * * * * * * * 43 0 * * * * * * 1568 0 0 A 44 572 * * * * * * * * * * * * * * 1611 * * * * 44 0 * * * * * * 1568 0 0 M 45 * * * * * * * 1550 * 1611 1595 * * * * * * * * * 45 0 * * * * * * 1568 0 0 V 46 * * * * * * * * * * * * * * * * * 0 * * 46 0 * * * * * * 1568 0 0 T 47 1550 * * * * * * * * * 1611 * * * * * 1595 * * * 47 0 * * * * * * 1568 0 0 V 48 * * * * * * * * * 1550 * * * * * * * 603 * * 48 0 * * * * * * 1568 0 0 V 49 580 * * * * * * * * * * * * * * * * 1595 * * 49 0 * * * * * * 1568 0 0 W 50 * * * * * * * * * * * * * * * * * * 0 * 50 0 * * * * * * 1568 0 0 L 51 * * * * * * * * * 0 * * * * * * * * * * 51 0 * * * * * * 1568 0 0 T 52 * * * * * * * * * * 580 * * * * * 1595 * * * 52 0 * * * * * * 1568 0 0 L 53 * * * * * * * * * 1595 * * * * * * * 580 * * 53 0 * * * * * * 1568 0 0 E 54 * * 580 1595 * * * * * * * * * * * * * * * * 54 0 * * * * * * 1568 0 0 S 55 * * * * * 1611 * * * * * * * * * 572 * * * * 55 0 * * * * * * 1568 0 0 V 56 * * * * * * * * * 1611 * * * * * * * 1595 1550 * 56 0 * * * * * * 1568 0 0 V 57 * * * * * * * * * 1611 1550 * * * * * * 1595 * * 57 0 * * * * * * 1568 0 0 T 58 1550 * * * * * * * * * * * 1611 * * * 1595 * * * 58 0 * * * * * * 1568 0 0 R 59 * * * * * * * * * * * * * * 0 * * * * * 59 0 * * * * * * 1568 0 0 V 60 * * * * * * * 1611 * * * * * * * * * 572 * * 60 0 * * * * * * 1568 0 0 A 61 1595 * * * * * * * * 1611 * * * * * * 1550 * * * 61 0 * * * * * * 1568 0 0 V 62 * * * * * * * 1611 * * * * * * * * * 572 * * 62 0 * * * * * * 1568 0 0 L 63 * * * * * * * 1550 * 1595 * * * * * * * 1611 * * 63 0 * * * * * * 1568 0 0 V 64 * * * * * * * * * 1550 * * * * * * * 603 * * 64 0 * * * * * * 1568 0 0 V 65 * * * * * * * * * 1550 * * * * * * * 603 * * 65 0 * * * * * * 1568 0 0 L 66 580 * * * * * * * * 1595 * * * * * * * * * * 66 0 * * * * * * 1568 0 0 L 67 * * * * * * * * * 0 * * * * * * * * * * 67 0 * * * * * * 1568 0 0 C 68 1611 1595 * * * * * * * * * * * * * 1550 * * * * 68 0 * * * * * * 1568 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 1568 0 0 A 70 1595 * * * * 1550 * * * * * * * * * * * 1611 * * 70 0 * * * * * * 1568 0 0 P 71 * * * * * * * * * * * * 0 * * * * * * * 71 0 * * 0 * * * 1568 0 0 //