HHsearch 1.5 NAME c5o60Z_ FAM FILE c5o60Z_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5o60Z_.a3m DATE Sat Jul 15 08:25:57 2017 LENG 64 match states, 64 columns in multiple alignment FILT 113 out of 180 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.4222 -0.0231 SEQ >ss_dssp CCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp ECDDDDAEEDEDEDADDCBEEBDEDBDDADECDEEEECEDEEDBDDBEDCBDDADDBBEDDEEE >ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9797999829999999999999999999999997478877589999999999999999885439 >Consensus xmkaxelrxlsxxELxxxlxelkxelfxLrfqxatgqlxnxxxirxxRkdIARixTvlxerxlG >c5o60Z_ GTTPGELRELTDDELKDKLRESKEELFNLRFQMATGQLSNNRRLRTVRQEIARVYTVLRERELG >UniRef50_C6X1Z2(1-61:62) Ribosomal protein L29 n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X1Z2_FLAB3 E=0.0001 s/c=0.78 id=23% cov=97% -MKKADIKNLSAGDIQNKLAEVKADFNKLKLSHSISPIENPILIRDMRKTIARLETELTLKQ-- >UniRef50_B3QR88(1-62:68) 50S ribosomal protein L29 n=12 Tax=Chlorobiaceae RepID=RL29_CHLP8 E=1e-06 s/c=0.88 id=31% cov=92% -----EIAAMSRKELLEKIDELENRLADINFHKAIEPPQNPMVFRNSKRDIARMKTRLRQMEL- >UniRef50_Q4FLM6(1-60:63) 50S ribosomal protein L29 n=2 Tax=Candidatus Pelagibacter ubique RepID=RL29_PELUB E=3e-06 s/c=0.88 id=30% cov=89% -----EIKKLSKDEVIKNIDKLKKDLFNFRFQKINSQVTDPSKIGQTKKTIARLKTTLKGK--- >UniRef50_P49562(8-63:89) 50S ribosomal protein L29, chloroplastic n=2 Tax=Bacillariophyta RepID=RK29_ODOSI E=2e-05 s/c=0.90 id=26% cov=89% -----EMIALPNSEISQAIIQTEKELFQLQFKKATRQPFKPHEIKKAKRRLAQLKTILTSR--- >UniRef50_C1E107(146-207:230) Predicted protein n=2 Tax=Micromonas RepID=C1E107_9CHLO E=2e-08 s/c=0.97 id=30% cov=98% -TKAADFKSMSNDELNAQIVEAKKMLFELRMKQSTRKEYKGHHFGILKTKIAQIRTVKREREV- >UniRef50_B6APH8(1-62:66) Ribosomal protein L29 n=3 Tax=Leptospirillum RepID=B6APH8_9BACT E=5e-08 s/c=0.95 id=30% cov=94% ----SDIKSLSESEILDKIKELRRELLMLRIQRVNGRLDKPHLLKEYKKDVSRMLTILTERKM- >UniRef50_A9FGI9(1-60:67) 50S ribosomal protein L29 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=RL29_SORC5 E=4e-05 s/c=0.82 id=30% cov=95% -MKAKDLRERTTEHLRELEKSLAAGLFEARFKNFTNRLNDTATIRKAKRDLARVKTILTQR--- >UniRef50_D2LQE9(1-52:52) Ribosomal protein L29 n=1 Tax=Aciduliprofundum boonei T469 RepID=D2LQE9_9EURY E=0.0001 s/c=0.91 id=31% cov=81% ---------MSPEERLKRLSELREELMhELGLSAMGGAPPSPGKIRSLRRQIARILTVMNE---- >UniRef50_B2VQQ5(1-62:120) 60S ribosomal protein L35 n=2 Tax=Pleosporineae RepID=B2VQQ5_PYRTR E=8e-05 s/c=0.78 id=31% cov=97% -MKTAQLWNKSKDDLAAQLTDLKSELIQLRTAKVTgGSNTKLTRIHDVRKGIAKVLTVINANQ-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2451 0 0 T 2 * * * * * * * 5709 * 2531 950 * * * * * 2187 3826 * * 2 0 * * * * * * 4455 0 0 T 3 * * * * * * * 5250 627 * * 4830 * * 3235 5768 2586 * * * 3 0 * * * * * * 4631 0 0 P 4 551 * * * 5923 * * 6023 5183 4879 * * 3577 * * 4716 3943 4753 * * 4 0 * * * * * * 4758 0 0 G 5 3003 * 4133 4058 6298 6768 6576 * 1480 * * 6341 * 4460 3970 2668 4055 6063 * 6245 5 0 * * * * * * 5077 0 0 E 6 * * 1614 816 * * * * 5607 * * 5577 * 4270 * * 6383 * * * 6 0 * * * * * * 5203 0 0 L 7 5479 * * * 4070 * * 1651 * 1173 4278 * * * * * * 3774 6811 5471 7 0 * * * * * * 5235 0 0 R 8 6193 * 6967 * * * 7007 4795 2036 5866 * * * 4940 772 6072 6614 5678 6549 * 8 0 * * * * * * 5253 0 0 E 9 3334 * 3140 2172 * 3121 * * 2876 * * 2805 * 5042 * 3530 5049 5376 * * 9 0 * * * * * * 5253 0 0 L 10 6647 * * * 4943 * * * 2216 1058 2203 * * 4985 6259 * * * * * 10 6 7852 * 2000 415 * * 5258 1000 0 T 11 5893 * 3456 5179 * 5072 * * 5550 * * 4107 5463 * * 855 2475 * * * 11 0 * * * * * * 5274 0 0 D 12 3483 * 2860 3863 * 6570 * 3615 4054 3414 * 3892 3517 5595 4262 4506 4287 2996 * 6661 12 0 * * * * * * 5274 0 0 D 13 3221 * 2408 1458 * 6641 5624 * 3580 5813 * 5258 6228 3860 * 4297 5261 5414 * * 13 0 * * * * * * 5274 0 0 E 14 5285 * 2778 640 * 4893 6266 * 6714 6168 * * * 3223 * * 6673 * * * 14 0 * * * * * * 5274 0 0 L 15 * 6564 * * 6833 * * 2750 * 405 5360 * * * 4864 * * 5810 * * 15 0 * * * * * * 5274 0 0 K 16 4412 * 4175 3185 * 5221 5600 5656 2525 3130 6311 4492 7269 2746 4238 4559 3950 4065 * * 16 0 * * * * * * 5274 0 0 D 17 2429 * 3667 1953 6576 4678 * * 2427 * * 4977 * 3662 5163 5371 4095 5614 * * 17 0 * * * * * * 5274 0 0 K 18 4915 * 6658 2576 * * 5608 6847 1499 2822 5908 5653 * 4048 3352 6598 4279 6933 * * 18 0 * * * * * * 5274 0 0 L 19 4869 * 6521 4966 * 6656 6532 2309 5864 926 5522 5816 * * 4849 * * 3600 * * 19 0 * * * * * * 5274 0 0 R 20 3019 * 3024 3862 6168 5930 6798 3167 2655 3829 * 4231 * 5587 4395 4157 4543 3727 * 6782 20 0 * * * * * * 5274 0 0 E 21 3846 * 3177 1058 * 6766 * * 3033 * * 5502 * 4480 6190 3669 5990 4905 * * 21 0 * * * * * * 5274 0 0 S 22 4105 * * 4377 5330 * * 6766 4212 723 5624 * * 5659 6029 3995 4423 5709 * 5944 22 0 * * * * * * 5274 0 0 K 23 5234 * 5624 4346 * 6168 6703 * 1388 4789 * 7015 * 3928 1662 4886 5666 6594 * 6825 23 0 * * * * * * 5274 0 0 E 24 3220 * 5461 2346 * 5754 7256 5851 1693 4413 6930 5574 * 3651 3168 5448 5885 6078 * * 24 0 * * * * * * 5274 0 0 E 25 4719 * 3841 807 * 6268 * * 3650 6814 5557 5175 * 3526 5451 5475 4719 * * * 25 0 * * * * * * 5273 0 0 L 26 5958 * * * 4663 7254 4772 5813 * 559 5627 * * 3548 * 6802 7314 6721 * 3751 26 0 * * * * * * 5273 0 0 F 27 3968 * 6595 6723 940 7300 6869 5880 6685 3158 3483 5423 * 6327 5594 5061 * 4481 7387 6072 27 28 5703 * 0 * * * 5273 1441 0 N 28 5200 * 3118 2657 * 5807 6802 * 3022 5553 5924 2327 * 3747 3104 3828 4655 6477 * * 28 0 * * * * * * 5273 0 0 L 29 3814 * 5528 5964 6572 * 6327 4864 * 453 4694 * * 7017 * * 6942 5640 * 5121 29 0 * * * * * * 5273 0 0 R 30 6298 * * 5332 * 6795 4835 6571 2645 * 6917 4605 * 5852 683 6617 6685 4694 * * 30 0 * * * * * * 5273 0 0 F 31 5533 * * * 1100 7012 * 3625 6617 3162 2748 5607 * 6814 * 6571 4596 3978 * 7057 31 15 6604 * 0 * * * 5273 1000 0 Q 32 3601 * * 5429 * 6194 6250 6067 2250 5720 6520 4787 * 1144 4892 3910 5396 * * * 32 31 5555 * 0 * * * 5273 1635 0 M 33 3197 * * * 6721 * 2372 5906 2216 3166 4707 4642 * 3133 3899 4926 6194 5731 6785 6477 33 14 6721 * 0 * * * 5273 1000 0 A 34 1233 * * 7022 6268 5241 6663 5524 3196 6011 6795 6604 * 4682 6120 2736 4558 3436 * 6194 34 14 6662 * 0 * * * 5273 1000 0 T 35 4120 * * * * 6795 6572 3123 6096 4586 3573 4141 * 6538 6514 3569 1304 3320 * * 35 22 6026 * 0 * * * 5273 1667 0 G 36 4498 * 6316 4721 * 976 6171 * 4474 * 5407 4587 * 5178 3162 3245 5704 6812 * * 36 11 7012 * 0 * * * 5273 1000 0 Q 37 4950 * 6327 4336 * 4964 5653 6571 3916 7057 * 5425 3117 1206 3476 4460 5435 4674 * * 37 48 5264 7241 493 1790 * * 5273 1675 0 L 38 4069 6293 * 5093 6475 7179 6564 3833 * 883 5622 5706 3810 * 6522 4710 5250 3815 * * 38 22 6055 * 0 * * 0 5272 1533 1000 S 39 5272 * 2778 1347 4706 4714 * 7334 5112 * * 3429 5786 4484 6324 4005 3980 5753 * 6461 39 0 * * * * 0 * 5272 0 1000 N 40 5360 * 4036 5129 * 4611 * * 2088 * * 1170 * 3806 5251 4264 6000 * * * 40 0 * * * * * * 5273 0 0 N 41 6677 * * * 6298 6463 4500 6520 * 3859 * 4859 1236 * * 4625 1777 4651 * 6477 41 0 * * * * * * 5273 0 0 R 42 2583 * 5953 * 5201 3587 1958 5920 3994 4473 4243 5795 7241 6010 5902 2267 * 7059 * * 42 0 * * * * * * 5273 0 0 R 43 6063 * 5846 2831 * * 5557 7068 2190 3741 * 6577 * 3205 1909 4768 4966 4714 * 6316 43 0 * * * * * * 5273 0 0 L 44 6849 6316 * * 2946 * * 1309 5653 2084 3908 * * * 5126 7323 * 3506 * * 44 0 * * * * * * 5273 0 0 R 45 5625 * 7454 * * 3404 * * 1783 * * 6745 4763 5460 1285 3646 5837 6316 * * 45 0 * * * * * * 5273 0 0 T 46 4071 * 5190 2450 5899 6101 4267 5136 2630 4414 * 4087 * 3091 4673 3866 3954 4308 * 6514 46 0 * * * * * * 5273 0 0 V 47 3183 6520 * * * * 5810 2363 5104 2668 3859 5899 * 5400 6788 6250 3646 1986 * 5924 47 0 * * * * * * 5273 0 0 R 48 * * * * * * * * 1401 * * * * * 721 6094 * * * * 48 0 * * * * * * 5273 0 0 Q 49 * * * * * * 4997 5771 1129 * * 6708 * 7127 1136 * 5557 * * * 49 0 * * * * * * 5273 0 0 E 50 5926 * 1275 3051 6723 * * * 4116 5059 4968 3950 * 4521 4545 4136 3265 6880 * * 50 0 * * * * * * 5273 0 0 I 51 * * * * * * * 422 * 3263 * * * * 5627 * * 2950 * * 51 0 * * * * * * 5273 0 0 A 52 24 * * * * * * * * * * * * * * 5924 * * * * 52 0 * * * * * * 5273 0 0 R 53 * * * * * * 6776 * 5909 5822 5667 * * 2804 353 * * 6572 * * 53 0 * * * * * * 5273 0 0 V 54 4245 * * * * * * 1422 * 2121 3609 * * * * 5233 5932 2188 * * 54 0 * * * * * * 5273 0 0 Y 55 7012 * * 3761 * * 5385 * 1584 1425 5349 3592 * 6577 4932 6869 * * * 5084 55 0 * * * * * * 5273 0 0 T 56 * * * * * * 6694 * * 6749 5436 * * * * * 79 * * 6480 56 0 * * * * * * 5273 0 0 V 57 3912 * * 4019 5472 * * 1539 * 4327 5329 * * * 6240 * 5724 1328 * * 57 0 * * * * * * 5278 0 0 L 58 4955 7044 * 4729 6733 * 7067 2179 4497 1242 3163 * * 4375 5221 6482 * 6682 * 6639 58 0 * * * * * * 5264 0 0 R 59 4109 6549 * * * 6030 4780 * 4460 * * 2207 * * 1656 3063 2468 * * * 59 0 * * * * * * 5262 0 0 E 60 3923 * 5785 799 * 5657 * * 4951 6592 6157 5716 * 2343 6272 5358 * 6509 * * 60 0 * * * * * * 5233 0 0 R 61 * * * 5784 * * 6063 6373 1369 * 5359 6308 * 5056 1183 * 4410 * * 6250 61 0 * * * * * * 5231 0 0 E 62 4935 * 5032 1445 5927 * * * 2409 * * 6320 * 3007 2863 * 3738 6013 * * 62 0 * * * * * * 5151 0 0 L 63 * * * 5865 * * * 4633 6148 606 3624 * * 5104 4713 * 6066 3209 * * 63 0 * * * * * * 4950 0 0 G 64 * * * * * 0 * * * * * * * * * * * * * * 64 0 * * 0 * * * 3898 0 0 //