HHsearch 1.5 NAME c5o60S_ FAM FILE c5o60S_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5o60S_.a3m DATE Sat Jul 15 08:30:11 2017 LENG 100 match states, 100 columns in multiple alignment FILT 110 out of 240 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4339 -0.2907 SEQ >ss_dssp CEEEEEETTEEEEECTTCEEEEECCCCCTTCEEEECEEEEEETTEEECCHHHHHHCCEEEEEEEEEECCCEEEEEEETTTTEEEEEEECCEEEEEEEEEC >sa_dssp ECACBDBDEDECEBCEDDECEBCDCEDEEECECEBEBCCBBDEEEDCEEEEDBEEDDADADADDDCEBEDDEDEDEEEEEEDDDEDDDDDECABBDBDCD >ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEEEEEEECCCCEEECCCEECCCEEEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCEEEEEEEC >ss_conf 9489999998779648998994233778878799707899818955993303157289999996235771999995377676364052574039999239 >Consensus tYAIixxgGkQyxVxxGdxixvxxlxxxxGxxixlxxVlxxxxxxxxiGxPxvxxaxVxaxVxxxxkxxKixvfKxkrRKxyrrxxGHRqxxTxixIxxI >c5o60S_ TYAIVKTGGKQYKVAAGDVVKVEKLDSEPGASVSLPVALVVDGANVTSKADDLAKVAVTAEVLEHTKGPKIRIHKFKNKTGYHKRQGHRQQLTVLKVTGI >UniRef50_A3EQ15(4-102:106) 50S ribosomal protein L21 n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ15_9BACT E=0.0003 s/c=0.47 id=29% cov=100% -FAVVRTGGKMYRVAPGQVLVVERVSGEGEFTLGDVLMVSDEQGTLFAEGNKVLPVTVKARILRQERDAKIIVFKKKKRKNYRRKQGHRQDVSRIQILEI >UniRef50_A7AWJ5(61-160:236) Ribosomal protein L21 domain containing protein n=1 Tax=Babesia bovis RepID=A7AWJ5_BABBO E=8e-18 s/c=0.91 id=29% cov=99% -YAIVHISGVPRWFERGRYYDVNRIQQQVGSRVILNRVAFFQSEQGwyVHGEPYLENVRIICEVQKHFRGPKQVTYKFRSKKHYKRKIGFRPELTRLKVE A- >UniRef50_Q8M9U4(3-109:121) 50S ribosomal protein L21, chloroplastic n=1 Tax=Chaetosphaeridium globosum RepID=RK21_CHAGL E=6e-17 s/c=0.83 id=29% cov=101% TYAIIDLGGKQLRVEPGRFYDAHlfssfksLLSESNTKIIIFRVLMISHGTEVQFGYPWLKNASVKARILHKKQNDKMLIYKMRSKKKTRKKFGHRQKIA RFIVDAI >UniRef50_Q4U8K1(202-304:381) 50S ribosomal protein L21, putative n=3 Tax=Piroplasmida RepID=Q4U8K1_THEAN E=1e-08 s/c=0.59 id=25% cov=101% TFCIFKSSPlHQHKVTKGDVVQIERLKrKNAGDKVTFGTVLLVGSKYwTIIGKPTVPYAKVHATIEQQTLCGEQLSFRYRKSRRISKFLRVRHWVTVLRI DDI >UniRef50_Q54IF0(61-161:172) Probable 39S ribosomal protein L21, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=RM21_DICDI E=2e-22 s/c=1.05 id=29% cov=101% SFAVVHISGKQYKVIEGDIIMTDKIQVDVGEHIVLDKVLLVGTKNETiIGKPIISNFKVHAYIEEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGG I >UniRef50_A4RN92(107-210:236) Putative uncharacterized protein n=3 Tax=Sordariomycetes RepID=A4RN92_MAGGR E=6e-14 s/c=0.75 id=22% cov=100% -YITVHIHGKPYLVTPGDSVRLPfKMPGVlPGDTLRLDRATTIGSRDFTLqGKPYVSTDLFrcRATVIGTDSEPIRLKVVKKQRTRRAKTIKSKHFYTTI RISEL >UniRef50_B5Y807(2-98:106) 50S ribosomal protein L21 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=RL21_COPPD E=2e-14 s/c=0.83 id=30% cov=98% -YALLEIRGKQYKVKENSTILVPGWEEIKPEEV--KVLMVKDEANTVVGTPFVEGAEIELEPVKQIRTKKIKVRRFKAKVNYHRKKSHRIRYTILRINGI >UniRef50_UPI00016C56CF(2-100:126) ribosomal protein L21 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56CF E=3e-11 s/c=0.70 id=27% cov=99% -YAIFEDGSRQYRVEPGSTVKIDFREAQLGQRLELPKVLLLsTGADTVIGRPLVEGARVLAEVIDFPR-VKTLTQRLRRRKASRRLKGHTQPHVKVKITH I >UniRef50_A8Z618(3-102:104) 50S ribosomal protein L21 n=1 Tax=Candidatus Sulcia muelleri GWSS RepID=RL21_SULMW E=5e-06 s/c=0.52 id=23% cov=99% --AIFELLGYQYKASLNWDIYIPLLKGyNKGKNIFIKKILFIKNNGLIInGFPYINRGIIKAKIIKHIRDKKQICFKSKKRKGFKLKKGHRQYLTKIKII YI # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 1349 719 * * * 1 0 * * * * * * 3904 0 0 Y 2 * * * * 1766 * * * * * * * * * * * * * * 502 2 0 * * * * * * 5400 0 0 A 3 216 5134 * * 5981 6193 * 6008 * * * * * * * 6912 * 4133 * * 3 0 * * * * * * 5565 0 0 I 4 * * * * * * * 1010 * 4396 * * * * * * 4678 1262 * * 4 0 * * * * * * 5565 0 0 V 5 4088 6912 * * 3364 * * 1093 * 4526 * * * * * * * 1627 * * 5 0 * * * * * * 5565 0 0 K 6 5864 * 4395 1683 * * 4275 * 2568 * 6988 5346 * 3276 2834 4143 6325 6927 * 4310 6 0 * * * * * * 5565 0 0 T 7 3951 4706 4188 * 4670 * 7002 1956 * 3603 * 5497 * 5789 * 3849 1966 3678 * 6490 7 0 * * * * * * 5565 0 0 G 8 4732 5042 * * * 704 3858 * 5290 5471 * 4835 * 5831 4676 3376 * 6270 * * 8 0 * * * * * * 5565 0 0 G 9 5739 * 5660 * * 425 * * * * * 3419 5878 * * 3232 * * * * 9 25 5878 * 0 * * * 5565 1000 0 K 10 * * * * 5296 6495 4020 6775 838 5672 6150 * * 4489 2936 4542 4345 5660 * 6319 10 0 * * * * * * 5565 0 0 Q 11 * * * * * * * 6446 6471 * 5420 6270 3657 215 * * * * * * 11 0 * * * * * * 5565 0 0 Y 12 * * * 6023 2830 * 4235 * * 3977 5572 * * 6082 5522 * * 5695 * 620 12 0 * * * * * * 5565 0 0 K 13 * * * 7099 5104 * * 4160 1373 3030 7593 5470 * 7076 2083 7071 5944 6525 3549 6936 13 0 * * * * * * 5565 0 0 V 14 4472 * * * 6603 * * 3542 * 4006 5981 * * * * * 6803 374 * * 14 0 * * * * * * 5565 0 0 A 15 3615 * 7067 1921 5540 * * 5092 3305 * * * * 3698 3501 3448 2225 5380 * * 15 0 * * * * * * 5571 0 0 A 16 4909 6196 * 1671 * * * * 2958 5050 * 6275 2039 4101 4850 4641 4339 4589 * * 16 0 * * * * * * 5571 0 0 G 17 * * 3705 5740 * 359 7137 * 6676 * * 3950 * * 4904 6630 * * * * 17 0 * * * * * * 5571 0 0 D 18 7150 * 1104 4033 * * 6270 7428 3848 7377 6184 7034 * 2766 2928 4052 * * 6358 * 18 0 * * * * * * 5571 0 0 V 19 5177 * 5502 3860 3364 * 5747 3424 3904 3305 7338 6999 * 5655 4971 4757 3962 2055 6248 3576 19 0 * * * * * * 5571 0 0 V 20 * * * * 5421 * * 1653 * 1704 * * * * * * * 2458 * 2559 20 0 * * * * * * 5571 0 0 K 21 4964 5572 2698 5127 4689 * 5517 4214 2934 3304 6652 4607 * 4700 3596 6002 3541 4264 * 3445 21 0 * * * * * * 5571 0 0 V 22 6298 5640 * * 6919 * * 2178 * 2943 5319 * * * * * 3324 1050 * * 22 31 6554 6561 1585 585 * * 5571 1000 0 E 23 5655 * 2161 1530 6444 7179 4894 * * * * 3022 2566 4373 5796 * * * * * 23 179 3305 6034 833 1189 * 0 5560 3506 1000 K 24 * * * * 4600 6203 3951 * 1669 3367 * 4727 6476 6047 1779 4856 6880 * 6564 4055 24 18 6331 * 0 * 971 1030 5532 1000 1625 L 25 5228 * * * 5285 * * 2495 * 888 4320 * 5896 6324 5587 7098 5722 3806 5395 6896 25 214 2856 * 182 3080 0 * 5560 3760 1000 D 26 3608 * 2584 3418 * 4852 * * 2404 6317 * 3297 2951 4113 5120 3639 7007 * * 5983 26 49 5388 6676 0 * * * 5571 1588 0 S 27 2116 * 5945 4787 4753 2387 4287 5995 4490 4395 * 7366 4933 4129 * 3720 6894 2980 * 5462 27 137 3469 * 112 3744 0 * 5565 3346 1000 E 28 3582 * 2910 1740 6049 7290 * 6243 3173 * * 3295 6195 4027 5983 3666 5139 4689 * * 28 54 5196 6750 1204 821 * * 5571 1763 0 P 29 2751 * 7018 3488 * 5286 * 3343 4659 3801 * 5416 2528 7082 6755 * 5676 1806 * * 29 16 6482 * 0 * 0 * 5569 1000 1000 G 30 * * 5214 5648 * 437 * * 4844 * * 3469 6243 6270 5364 5946 5475 * * * 30 26 5802 * 2322 322 * * 5571 1000 0 A 31 4050 * 1611 2731 6164 4086 * * 4118 * * 4977 * 4621 6449 2563 3680 * * * 31 19 6270 * 1585 585 * * 5571 1000 0 S 32 4941 6506 5406 2603 * * 5215 3949 2300 * 7199 4479 7007 4156 3630 3801 3650 2990 * * 32 26 5822 * 2072 392 * * 5571 1530 0 V 33 6049 * 6709 * 4885 6561 5150 1643 * 1928 6908 * 6661 * * * * 1758 * 7383 33 19 * 6243 * * * * 5571 0 0 S 34 4334 * 3541 2020 4803 6156 5959 4424 4420 5169 * 5448 * 4917 3628 3887 3035 3575 * 5609 34 0 * * * * * 0 5548 0 1000 L 35 6401 * 6156 * 1855 * * 2852 6251 1031 5794 * * * 6710 * 6639 5705 * * 35 59 4632 * 786 1251 0 * 5548 2494 1000 P 36 5790 * 2055 2948 * 4036 5983 * 3071 * * 2642 3900 5082 4486 4614 4416 5216 * * 36 0 * * * * * * 5571 0 0 V 37 5415 6721 2851 3545 * * 6275 5710 2323 6164 * 4410 5129 4933 2518 4491 4863 2887 * * 37 20 * 6214 * * * * 5571 0 0 A 38 4262 * * * * * * 2485 7107 2614 5580 * * * * 6955 * 812 * * 38 0 * * * * 1000 1000 5579 0 1066 L 39 4468 * 6544 * 6773 * 5367 4724 6709 654 3539 7282 * * * 5744 4316 4671 6990 5689 39 23 5952 * 0 * 0 * 5572 1582 1000 V 40 2882 5305 * 5371 3556 * * 4580 6270 1418 3195 * * 6329 6962 6164 4320 3439 * 6046 40 51 4844 * 223 2806 * * 5571 2373 0 V 41 4298 5231 6164 * 3493 5383 * 2422 5097 2271 5726 6017 * * * 4602 4794 2132 * 4910 41 213 2867 * 124 3603 * * 5571 3674 0 D 42 6561 * 2277 3551 * 1602 5741 * 2924 6721 * 3841 * 5264 * 3715 5637 7082 * 6787 42 117 3685 * 628 1503 * * 5571 2860 0 G 43 4975 * 2498 3537 * 1687 * * 4475 * 6942 3698 * 5521 * 2497 4401 6561 * 7067 43 23 7377 6678 0 * * * 5571 1000 0 A 44 4094 * 3230 2329 * 2404 * * 2917 * * 3955 4762 6644 3615 3927 5055 5282 * * 44 27 5762 * 1805 486 * 0 5568 1617 1000 N 45 6204 * 2525 2404 * 3823 6400 7326 3300 * 6644 2366 * 4147 4950 4140 4094 6949 * 5842 45 137 3715 6127 158 3272 * 0 5568 3241 1000 V 46 4154 6793 * 5330 2743 4057 6972 3274 5889 3161 5917 7116 5212 5518 7107 6849 3366 2320 * 3742 46 68 5167 5793 461 1869 541 1677 5571 2137 1931 T 47 6121 * 5789 4549 4735 6769 6339 3955 3055 4023 * 5699 6892 3780 5322 4571 1538 3595 5924 6914 47 204 2925 * 0 * * 0 5575 3735 1867 S 48 4102 * * * 3499 5711 5667 1932 4809 2439 * * * * 6480 7117 5336 1975 * 4841 48 74 4324 * 0 * * 0 5575 2533 1867 K 49 5396 * 6954 5390 5966 499 5171 3664 5776 6611 * * 6769 6293 6446 6041 5544 5986 * * 49 38 * 5249 * * 1486 637 5575 0 1867 A 50 3435 * 6017 5830 4479 2557 7056 5643 2941 6962 6370 5054 5381 3497 2955 3676 3262 7491 * 5500 50 33 6930 6149 1000 1000 2280 333 5577 1000 2380 D 51 5971 * 5007 5888 * 5440 * * 4702 6809 * 5242 443 5342 5296 5587 5426 6714 * * 51 9 * 7288 * * 593 1568 5575 0 2592 D 52 4500 * 5376 5687 2988 * 6684 5416 5401 4309 * 5724 2827 4823 * 5409 2808 4035 5003 2149 52 47 4977 * 853 1164 * 0 5561 2048 1928 L 53 6392 * * * 5226 5121 * 2664 * 1516 * * 5568 * * * 5233 1539 * 4913 53 29 5652 * 1081 923 528 1706 5561 1706 1928 A 54 3367 * 3113 1989 * 5335 * 4484 3370 4858 * 4086 4255 6029 5699 3525 5576 3621 * * 54 19 6270 * 1000 1000 * 0 5572 1000 1000 K 55 6745 * 4078 4341 * 1816 * * 3443 * * 1827 4620 7439 5410 3940 3995 6705 * 5890 55 71 4383 * 1427 671 * 0 5572 2186 1000 V 56 1137 * 5279 * 4534 3597 * 5302 6810 6866 * 6320 * * 5225 5226 7017 1978 * 5417 56 0 * * * * 0 * 5572 0 1000 A 57 3168 * * 4735 * 5042 4946 4411 2081 5276 * * * 5440 2931 2873 3159 4026 * 6049 57 124 3603 * 328 2299 * * 5571 3201 0 V 58 5384 * * * 5101 * * 2511 * 5678 * * * * * * * 447 * 5747 58 23 6012 * 1000 1000 * * 5571 1000 0 T 59 7186 * 6408 2317 * * 3947 3873 2408 5106 7029 5748 * 5054 3842 3964 2505 4212 * 6644 59 13 * 6852 * * * * 5571 0 0 A 60 557 4186 * * * 3127 * * * 3648 * * * * * 6656 6075 4425 * * 60 27 5746 * 1000 1000 * 0 5567 1000 1000 E 61 * * 4821 1842 * * * 5082 3212 6405 * * * 4391 3364 4580 1883 3861 * 6649 61 0 * * * * 0 * 5567 0 1000 V 62 * 5913 * * * * * 1648 * 5029 * * 6243 * * * * 713 * 6599 62 0 * * * * * * 5571 0 0 L 63 6262 * * 2785 * 6506 * 2827 4738 1531 6630 * * 5739 * * 4648 2072 * * 63 10 7159 * 2000 415 * * 5571 1000 0 E 64 4224 7034 4302 1302 * 2934 5029 * 3150 * * 4442 6554 3986 4302 4713 * * * * 64 11 7007 * 0 * * * 5571 1000 0 H 65 7138 6506 4379 4161 5623 * 1370 4997 4309 * 5836 4209 * 2208 * * 4360 4257 * * 65 14 6676 * 0 * * * 5571 1000 0 T 66 3749 5320 4039 4934 2993 2887 * 3573 3513 4076 6661 7159 6267 * 5132 4558 2695 4056 * * 66 0 * * * * * * 5571 0 0 K 67 * * 6759 6499 5802 * * 6353 1367 3657 6408 6726 * 5043 1364 4560 * * * * 67 19 * 6267 * * * * 5571 0 0 G 68 4253 5879 2274 3207 * 1379 6057 * 6046 * 5848 4530 * 6012 * 4333 4052 * * 6078 68 0 * * * * 0 * 5554 0 1000 P 69 4153 * 2694 2981 * 5892 5512 * 2337 * 6196 5858 2146 5787 3495 5160 5550 6267 * * 69 0 * * * * * * 5571 0 0 K 70 * * * 5036 * * 6652 6012 291 4712 4673 5880 * * * * 5340 * * 7005 70 0 * * * * * * 5571 0 0 I 71 * 6432 * 4434 * * * 1530 4756 3546 5132 * * 4671 4873 * 4992 1711 * 4854 71 0 * * * * * * 5571 0 0 R 72 * * 6908 7007 7154 * 6410 1878 3588 2639 * 6678 6196 5678 3709 6005 3591 2588 * 3942 72 0 * * * * * * 5571 0 0 I 73 3940 6358 * * * 5316 5039 1748 4010 * 5413 * * * 6449 4190 4637 1406 * * 73 0 * * * * * * 5571 0 0 H 74 5983 * * 4893 1141 5027 5613 3591 5802 4169 * * * 5139 5229 * * 3901 * 2577 74 0 * * * * * * 5571 0 0 K 75 * * * * 5880 * 4253 6055 530 * * * * 6270 2718 6980 6049 5198 * 7029 75 0 * * * * * * 5571 0 0 F 76 4930 * * * 2273 * 4316 5802 1688 6267 3213 * 6980 6196 7089 6358 4893 * * 2425 76 0 * * * * * * 5571 0 0 K 77 * * * 6084 5802 * * 5088 817 6364 * 6808 6980 6499 1719 6726 5880 * * * 77 11 * 7017 * * * * 5571 0 0 N 78 4455 * * * * 6079 * * 3701 * * 5576 2448 4822 943 3279 * * * * 78 0 * * * * 0 * 5574 0 1000 K 79 * * * * * 5037 * * 1586 * * * * 6678 713 5892 * * * * 79 0 * * * * * * 5571 0 0 T 80 6049 5678 * 7017 * * * * 375 * * * * 3820 4272 * 4736 5229 * * 80 23 * 5983 * * * * 5571 0 0 G 81 4935 * 4310 * * 2450 2849 * 3234 * * 2172 * 4387 2439 5346 6635 * * * 81 0 * * * * 0 * 5543 0 1000 Y 82 * * * 6049 4284 * 3641 5336 * * 6902 7154 * * 4835 2585 3384 5505 5409 1089 82 0 * * * * * * 5571 0 0 H 83 4918 * * 4848 * * 3377 * 2241 6678 4309 * * 3485 1344 5469 7017 4303 * * 83 0 * * * * * * 5571 0 0 K 84 * * * * * 5802 * * 1431 5704 * * * * 942 6329 6270 5012 6054 * 84 0 * * * * * * 5571 0 0 R 85 6410 * * 5350 3902 * 4773 4927 1570 4522 6554 6993 * 5298 3099 4788 2387 7428 5304 5156 85 0 * * * * * * 5571 0 0 Q 86 4648 * * * 4505 * * 3486 2683 5892 6176 3024 * 2928 2975 * 3308 4085 5079 3849 86 0 * * * * * * 5571 0 0 G 87 * * 5880 6353 6578 333 * * 4410 * * 6055 * 5022 5892 4551 6178 * * * 87 0 * * * * * * 5571 0 0 H 88 5880 5802 * 6196 3997 * 484 * * * * * * * 6275 4446 6353 4077 * 4528 88 0 * * * * * * 5571 0 0 R 89 * * * 5678 * * * * 3313 * * * 5880 5817 286 * 6267 * * 6353 89 0 * * * * * * 5571 0 0 Q 90 5538 * 6088 5747 * 5165 3241 6243 * * * * 4688 568 4848 4720 6353 * * * 90 0 * * * * * * 5571 0 0 Q 91 4399 5878 3372 3144 4129 4924 7122 * 2912 4829 * 4810 3251 3793 4095 4446 6599 5364 3872 4625 91 0 * * * * * * 5571 0 0 L 92 5215 6808 * 7225 2867 * 6267 4223 * 2071 3690 6013 * 4472 * * * 3724 * 1727 92 0 * * * * * * 5571 0 0 T 93 6298 * * * * * 6661 5802 * 5387 * * * 5480 * 2939 406 5154 * * 93 0 * * * * * * 5571 0 0 V 94 3963 * 6144 3671 * 5580 6329 5014 2789 4953 5490 6726 6554 5288 1710 7089 4241 2758 * 5625 94 0 * * * * * * 5571 0 0 L 95 * * * * 3960 * * 1448 * 1574 5378 * * * * * * 2257 * * 95 0 * * * * * * 5571 0 0 K 96 5802 * * 4477 6178 * * 6298 1739 3420 4566 * * 5711 1499 5234 4398 5698 * 6759 96 0 * * * * * * 5571 0 0 V 97 * * * * * * * 593 * * * * * * * * * 1568 * * 97 0 * * * * * * 5571 0 0 T 98 6665 5862 3073 3116 * 4356 * 4247 3291 3923 5735 3267 * 5755 * 3828 2445 3758 * * 98 0 * * * * * * 5557 0 0 G 99 4055 * 2434 2053 * 4089 6249 * 2954 * * 4435 * * 6633 2034 * * * 6332 99 0 * * * * * * 5557 0 0 I 100 * * * * * * * 389 * 3304 * * * * * * * 2890 * * 100 0 * * 0 * * * 5545 0 0 //