HHsearch 1.5 NAME c5nl1J_ FAM FILE c5nl1J_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5nl1J_.a3m DATE Sat May 19 08:24:36 2018 LENG 26 match states, 26 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.5180 3.6936 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEDEEEEDDDEEEEDEDEEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 91159999988888989799998629 >Consensus xxxtretifeaskkvtnslsnlisli >c5nl1J_ SHMTRETIFEASKKVTNSLSNLISLI >UniRef50_P18010(485-510:633) Invasin ipaA n=7 Tax=Shigella RepID=IPAA_SHIFL E=0.0001 s/c=1.84 id=85% cov=104% TYLTRETIFEASKKVTNSLSNLISLI # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 1000 1000 * * * 1 0 * * * * * * 1083 0 0 H 2 * * * * * * 1000 * * * * * * * * * * * * 1000 2 0 * * * * * * 1083 0 0 M 3 * * * * * * * * * 1000 1000 * * * * * * * * * 3 0 * * * * * * 1083 0 0 T 4 * * * * * * * * * * * * * * * * 0 * * * 4 0 * * * * * * 1083 0 0 R 5 * * * * * * * * * * * * * * 0 * * * * * 5 0 * * * * * * 1083 0 0 E 6 * * * 0 * * * * * * * * * * * * * * * * 6 0 * * * * * * 1083 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1083 0 0 I 8 * * * * * * * 0 * * * * * * * * * * * * 8 0 * * * * * * 1083 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 1083 0 0 E 10 * * * 0 * * * * * * * * * * * * * * * * 10 0 * * * * * * 1083 0 0 A 11 0 * * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 1083 0 0 S 12 * * * * * * * * * * * * * * * 0 * * * * 12 0 * * * * * * 1083 0 0 K 13 * * * * * * * * 0 * * * * * * * * * * * 13 0 * * * * * * 1083 0 0 K 14 * * * * * * * * 0 * * * * * * * * * * * 14 0 * * * * * * 1083 0 0 V 15 * * * * * * * * * * * * * * * * * 0 * * 15 0 * * * * * * 1083 0 0 T 16 * * * * * * * * * * * * * * * * 0 * * * 16 0 * * * * * * 1083 0 0 N 17 * * * * * * * * * * * 0 * * * * * * * * 17 0 * * * * * * 1083 0 0 S 18 * * * * * * * * * * * * * * * 0 * * * * 18 0 * * * * * * 1083 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 1083 0 0 S 20 * * * * * * * * * * * * * * * 0 * * * * 20 0 * * * * * * 1083 0 0 N 21 * * * * * * * * * * * 0 * * * * * * * * 21 0 * * * * * * 1083 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1083 0 0 I 23 * * * * * * * 0 * * * * * * * * * * * * 23 0 * * * * * * 1083 0 0 S 24 * * * * * * * * * * * * * * * 0 * * * * 24 0 * * * * * * 1083 0 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * * 1083 0 0 I 26 * * * * * * * 0 * * * * * * * * * * * * 26 0 * * 0 * * * 1083 0 0 //