HHsearch 1.5 NAME c5n6yC_ FAM FILE c5n6yC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5n6yC_.a3m DATE Sat Jul 29 08:24:48 2017 LENG 112 match states, 112 columns in multiple alignment FILT 9 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.3773 -1.3430 SEQ >ss_dssp CHHHHHHHHHHHHHHCCGGGCSSHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHHHTT TCCCTTTTCSCC >sa_dssp EEECBDCBBDBAEEEBEBADDEBBDCBDDBADBAADBABCBCCECECDEEDEDCEDBCDDACDAADCADEDBEBBEECDDEDBDEBBECABEDACCCBCE ECEDEDBEDEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHC CCCCHHHHCCCC >ss_conf 9668999999999987599873120377778779999999854887887786788899889999999998580076389899999999999867887610 010004204589 >Consensus skxxidelxxyixkxcLWQFxSRsWDRexnxegIlxxtxxllxGexvxxxTpxdkxfyxDaxxlaxxxkxxxpWxxxmxkdeixxLmxxLkxRlxxitIt xSlNxELxxxxY >c5n6yC_ SQSHLDDLFAYVEERCLWQFFSRTWDREENIEGVLNQVGRLLTGQEPLRGTPQERLFYADALAMANDVRERFPWASQVNKEEIEFLLDGLKSRLVDVTIT RSTNRELNHHLY >UniRef50_Q6NA07(2-113:113) Vanadium dinitrogenase delta subunit n=1 Tax=Rhodopseudomonas palustris RepID=Q6NA07_RHOPA E=1e-27 s/c=1.11 id=50% cov=101% SAEQIDQLYNYCQERYLWQFFSRTWDRQENIDNIVATATSLFNGEVVKRETPMEKLFYSDAIVMVSDFKERFPWILDCSPDQIRELMAGLKDRLTEIAIT RSLNGELNHSLY >UniRef50_Q46A90(4-112:112) Nitrogenase, subunit delta n=3 Tax=Methanosarcina RepID=Q46A90_METBF E=1e-21 s/c=0.94 id=38% cov=98% ---KIEEVTALIQKQCLWQFFSRSWDREENIEGIMTMTSKILNGEKINLVTPADKAFYSDAKFLAAEIQKKMTWISELDKSEVLELIEGVKERLLYIAVK KSRNCELNLSNY >UniRef50_A5N907(2-112:112) VnfG n=2 Tax=Clostridium kluyveri RepID=A5N907_CLOK5 E=6e-20 s/c=0.89 id=36% cov=100% -KNRVEELFSFIQERYLWQFYSRSWDREENIKGILDATFEICTGKQVKDKTLMDKYFYTEGKAFSEVIKKKFPWFLELDESEKKSVINDLQTKLLDVVVT RSLNAELKNPNY >UniRef50_Q20XD2(31-142:142) Nitrogenase n=6 Tax=Bacteria RepID=Q20XD2_RHOPB E=1e-14 s/c=0.72 id=35% cov=101% TRAKVSELENYIMKNCLWQFNSRGWDRRKQSAGVLGKTAQILVGEEVDNPTPLDKCYWVDAVLLARNFTERCAWLSDMGKDEIRALIAKLHARIDWLTID GSLNEELTVQNY >UniRef50_O68940(6-116:116) Nitrogenase iron-iron protein delta chain n=7 Tax=cellular organisms RepID=ANFG_RHORU E=3e-43 s/c=1.58 id=37% cov=100% -KDRIDLLIDYIMKHCLWQFHSRSWDRKRQNEGILTKTTQLLCDEPVDLGTPADKCYWVDAVCLADAYKSRYPWLKTMDKDDIKALMGALHERLDHLTIT GSLNLELTDQHY >UniRef50_Q46244(5-116:116) Nitrogenase iron-iron protein delta chain n=4 Tax=Bacteria RepID=ANFG_CLOPA E=6e-42 s/c=1.53 id=42% cov=101% SKVQLNQLTDYIMKNCLWQFHSRKWDRERQNEGILTKTKQILLGEEVDLSTPADRCYYADALCLADAYKTEYPWINDMSKDELIQLMQQLKDRIDYVTIT GSLNAELTDPRY >UniRef50_B3Q673(35-146:146) Fe-only nitrogenase, delta subunit n=3 Tax=Rhodopseudomonas palustris RepID=B3Q673_RHOPT E=9e-42 s/c=1.52 id=31% cov=101% TKARVDQMVDWIMKNCLWQFHSRAWDRKRQNEGILGIAAKLLAGEPFTPETPEDRCYWVDSVTLQRAYQATCPWLATMSKDDIKALMQELHARVDYLTVT GSLNEELTDLHY >UniRef50_Q46083(23-132:132) Nitrogenase iron-iron protein delta chain n=25 Tax=Bacteria RepID=ANFG_CLOHU E=1e-41 s/c=1.55 id=39% cov=99% --ARIDELTDYIMKTLLWQFHSRSWDRERQNAEILKKTKELLCGEPVDLSTSHDRCYWVDAVCLADDYREHYPWINSMSKEEIGSLMQGLKDRMDYLTIH RLLNEELSDKHY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 713 1358 * * * 1 0 * * * * * * 2187 0 0 Q 2 2688 * * * * * * * 861 * * * * 2667 2869 * * * * * 2 0 * * * * * * 2503 0 0 S 3 1531 * 3333 2822 * * * * * * * 2541 * * * 2808 * 3340 * * 3 0 * * * * * * 2530 0 0 H 4 * * * * * * 2976 * 2112 * * * * 2268 1204 * * * * * 4 0 * * * * * * 2629 0 0 L 5 * * * * * * * 1221 * 2224 * * * * * * * 1486 * * 5 0 * * * * * * 2629 0 0 D 6 * * 899 1891 * * * * * * * 3524 * * * 3220 * * * * 6 0 * * * * * * 2629 0 0 D 7 * * 2976 1077 * * * * * 3519 * * * 1682 * * * * * * 7 0 * * * * * * 2629 0 0 L 8 * * * * * * * * * 373 3266 * * * * * * 3012 * * 8 0 * * * * * * 2629 0 0 F 9 * * * 3220 1874 * * 3519 * * * * * * * * 1699 3266 * 3051 9 0 * * * * * * 2629 0 0 A 10 1994 * 1414 * * * * * * * * 2133 * * * 2779 * * * * 10 0 * * * * * * 2629 0 0 Y 11 * * * * 2779 * * * * 3012 * * * * * * * * 3266 675 11 0 * * * * * * 2629 0 0 V 12 * 3051 * * * * * 411 * * * * * * * * * 2976 * * 12 0 * * * * * * 2629 0 0 E 13 * * * 2976 * * * * * * 1051 * * 1357 * * * * * * 13 0 * * * * * * 2629 0 0 E 14 * * * 1346 * * * * 721 * * * * * * * * * * * 14 0 * * * * * * 2629 0 0 R 15 * * * * * * 3519 * * * * 1746 * 3012 1346 * 3363 * * * 15 0 * * * * * * 2629 0 0 C 16 * 652 * * * * * * * 3363 * * * * * * * * * 1908 16 0 * * * * * * 2629 0 0 L 17 * * * * * * * * * 0 * * * * * * * * * * 17 0 * * * * * * 2629 0 0 W 18 * * * * * * * * * * * * * * * * * * 0 * 18 0 * * * * * * 2629 0 0 Q 19 * * * * * * * * * * * * * 0 * * * * * * 19 0 * * * * * * 2629 0 0 F 20 * * * * 0 * * * * * * * * * * * * * * * 20 0 * * * * * * 2629 0 0 F 21 * * * * 1428 * 1414 * * * * 3220 * * * * * * * 2779 21 0 * * * * * * 2629 0 0 S 22 * * * * * * * * * * * * * * * 0 * * * * 22 0 * * * * * * 2629 0 0 R 23 * * * * * * * * * * * * * * 0 * * * * * 23 0 * * * * * * 2629 0 0 T 24 3266 * * * * 3220 * * 3524 * * * * * * 1139 2013 * * * 24 0 * * * * * * 2629 0 0 W 25 * * * * * * * * * * * * * * * * * * 0 * 25 0 * * * * * * 2629 0 0 D 26 * * 0 * * * * * * * * * * * * * * * * * 26 0 * * * * * * 2629 0 0 R 27 * * * * * * * * * * * * * * 0 * * * * * 27 0 * * * * * * 2629 0 0 E 28 * * * 784 * * * * 2387 * * * * 3051 3220 * * * * * 28 0 * * * * * * 2629 0 0 E 29 * * * 951 * * * * 3220 * * * * * 1414 * * * * * 29 0 * * * * * * 2629 0 0 N 30 * * * * * * * * * * * 951 * 1051 * * * * * * 30 0 * * * * * * 2629 0 0 I 31 * * * * * * * 951 * * * 1414 * * * 3220 * * * * 31 0 * * * * * * 2629 0 0 E 32 2290 * 3051 918 * * * * 2779 * * * * * * * * * * * 32 0 * * * * * * 2629 0 0 G 33 * * * 3363 * 355 * * * * * 3051 * * * * * * * * 33 0 * * * * * * 2629 0 0 V 34 * * * * * * * 385 * * * * * * * * * 2093 * * 34 0 * * * * * * 2629 0 0 L 35 * * * * * * * * * 405 3012 * * * * * * 3051 * * 35 0 * * * * * * 2629 0 0 N 36 3051 * 2779 * * 2243 * * 3363 * * 2976 * * * * 1746 * * * 36 0 * * * * * * 2629 0 0 Q 37 2779 * * * * * * 3266 1401 * 3012 * * 2976 * * 3051 * * * 37 0 * * * * * * 2629 0 0 V 38 2154 * * * * * * * * * * * * * * * 625 2976 * * 38 0 * * * * * * 2629 0 0 G 39 2243 * * * 2779 2976 * * 2441 * * * * * * 3012 2266 * * * 39 0 * * * * * * 2629 0 0 R 40 * * * 2041 * * * * 2134 * * * * 1829 2976 3051 * * * * 40 0 * * * * * * 2629 0 0 L 41 * * * * * * * 1108 * 899 * * * * * * * * * * 41 0 * * * * * * 2629 0 0 L 42 * 2779 * * 3051 * * * * 447 * * * * * * * * * * 42 0 * * * * * * 2629 0 0 T 43 3266 2439 * * * * * * * 3524 * 2031 * * * * 1874 3220 * * 43 0 * * * * * * 2629 0 0 G 44 * * 3519 * * 132 * * * * * * * * * * * * * * 44 0 * * * * * * 2629 0 0 Q 45 * * * 460 * * * * 2779 * * * * 2976 * * * * * * 45 0 * * * * * * 2629 0 0 E 46 * * * 1638 * * * * 3012 * * * 1794 2779 * * * 3051 * * 46 0 * * * * * * 2629 0 0 P 47 * * * * 3266 * * 3012 * * * * 2976 * * * * 632 * * 47 0 * * * * * * 2629 0 0 L 48 * * 1401 * * * * * 1908 2976 * 3012 * * * * 3266 * * * 48 0 * * * * * * 2629 0 0 R 49 * * 2779 * * * * * * 1339 * 3220 3266 * 2013 * * * * * 49 0 * * * * * * 2629 0 0 G 50 * * * 2154 * 2222 * * 2779 * * * 3220 * * 2441 * 3012 * * 50 0 * * * * * * 2629 0 0 T 51 * * * * * * * * * * * * * * * * 0 * * * 51 0 * * * * * * 2629 0 0 P 52 * * * * * * * * * 2779 * * 401 * * 3363 * * * * 52 0 * * * * * * 2629 0 0 Q 53 1746 * * 3266 * * 3363 * * 3220 1908 * * 2976 * * * * * * 53 0 * * * * * * 2629 0 0 E 54 * * 411 2013 * * * * * * * * * * * * * * * * 54 0 * * * * * * 2629 0 0 R 55 * * * * * * * * 774 * * * * * 1268 * * * * * 55 0 * * * * * * 2629 0 0 L 56 3012 1051 * * * * * * * 2013 * * * * * * * * * 2779 56 0 * * * * * * 2629 0 0 F 57 * * * * 951 * * * * * * * * * * * * * * 1051 57 0 * * * * * * 2629 0 0 Y 58 * * * * * * * * * * * * * * * * * * 1338 727 58 0 * * * * * * 2629 0 0 A 59 2224 * * * * * * * * * * * * * * 2031 2779 1338 * * 59 0 * * * * * * 2629 0 0 D 60 * * 227 2779 * * * * * * * * * * * * * * * * 60 0 * * * * * * 2629 0 0 A 61 414 * * * * 2779 * * * * * * * * * 3266 * * * * 61 0 * * * * * * 2629 0 0 L 62 * * * * * * * 3051 1891 2224 * * * * * * * 1338 * * 62 0 * * * * * * 2629 0 0 A 63 1874 1882 * * 3012 * * * * 3220 * * * * * * 3266 3051 * * 63 0 * * * * * * 2629 0 0 M 64 * * * * 2779 * * * * 721 2013 * * * * * * * * * 64 0 * * * * * * 2629 0 0 A 65 667 * * * * * * * * * * * * 3266 * 2779 * 3051 * * 65 0 * * * * * * 2629 0 0 N 66 3012 * 1882 2779 * * * * * * * 2976 * * 2243 3051 * * * * 66 0 * * * * * * 2629 0 0 D 67 1846 * 1535 3012 * * * * * * * 3220 * * * * * 2779 * * 67 0 * * * * * * 2629 0 0 V 68 * * * * 2133 * * 1891 * * * * * * * * * 2976 * 1414 68 0 * * * * * * 2629 0 0 R 69 * * * * * * * * 1183 * * * * 2134 2157 * 3220 * * * 69 0 * * * * * * 2629 0 0 E 70 3266 * * 1145 * * * * 1891 * * * * * * 3519 3524 * * * 70 0 * * * * * * 2629 0 0 R 71 * * * 3524 * * 3363 * 1891 * * * * * 1177 * 3266 * * * 71 0 * * * * * * 2629 0 0 F 72 * 2243 * * 1346 * * * * * 3012 * * * * * * * * 1882 72 0 * * * * * * 2629 0 0 P 73 3220 * * * * * * * * * * * 379 * * * 3012 * * * 73 0 * * * * * * 2629 0 0 W 74 * * * * * * * * * * * * * * * * * * 0 * 74 0 * * * * * * 2629 0 0 A 75 2976 * * * 2779 * * 1222 * 1744 * * * * * * * * * * 75 0 * * * * * * 2629 0 0 S 76 3266 * * * * * * * 3519 1908 * 2441 * * * 1481 * * * * 76 0 * * * * * * 2629 0 0 Q 77 * * 1667 1891 * * * * * * * * * 2976 * 3363 2387 * * * 77 0 * * * * * * 2629 0 0 V 78 * 3051 * * * * * * * 1891 1051 * * * * * * 2976 * * 78 0 * * * * * * 2629 0 0 N 79 * * 1487 * * 3220 * * * * * 2976 * * * 1291 * * * * 79 0 * * * * * * 2629 0 0 K 80 * * * 2779 * * * * 447 * * * 3051 * * * * * * * 80 0 * * * * * * 2629 0 0 E 81 * * 983 2157 * * * * * * * * * * * 1891 * * * * 81 0 * * * * * * 2629 0 0 E 82 * * 2387 539 * * * * * * * * * 3051 * * * * * * 82 0 * * * * * * 2629 0 0 I 83 * * * * * * * 636 2779 3524 * * * * * * * 3012 * * 83 0 * * * * * * 2629 0 0 E 84 * * * 2976 * 3363 * 3524 1570 3012 * * * * 2133 * * * * * 84 0 * * * * * * 2629 0 0 F 85 1744 * * 2031 2976 * * * * * * * * 3524 * 2041 * * * * 85 0 * * * * * * 2629 0 0 L 86 * * * * * * * * * 227 * * * * * * * 2779 * * 86 0 * * * * * * 2629 0 0 L 87 * * * * * * * 1408 * 2976 1012 * * * * * * * * * 87 0 * * * * * * 2629 0 0 D 88 2133 * 2976 3012 * 3519 * * * * * 2779 * 1795 * * * * * * 88 0 * * * * * * 2629 0 0 G 89 3519 * 2779 3266 * 1093 * * 3220 * * * * 3524 * * * * * * 89 0 * * * * * * 2629 0 0 L 90 * * * * * * * * * 191 * * * * * * * 3012 * * 90 0 * * * * * * 2629 0 0 K 91 * * * * * * 1744 * 847 * * * * 2779 * * * * * * 91 0 * * * * * * 2629 0 0 S 92 2243 * 1714 2244 * * * * * * * * * * * 2976 2779 * * * 92 0 * * * * * * 2629 0 0 R 93 * * * * * * * * 2779 * * * * * 227 * * * * * 93 0 * * * * * * 2629 0 0 L 94 * * * * * * * 2364 * 726 3363 * * * * * * 3266 * * 94 0 * * * * * * 2629 0 0 V 95 * * 1051 * * * * * * 1891 * * * * * * 3051 2976 * * 95 0 * * * * * * 2629 0 0 D 96 * * 1874 3051 * * 3519 * * * * * * * * * * * 3220 1279 96 0 * * * * * * 2629 0 0 V 97 * * * * * * * 2031 * 1338 * * * * * * * 1475 * * 97 0 * * * * * * 2629 0 0 T 98 2031 * * * * * * * * * * * * * * * 714 2779 * * 98 0 * * * * * * 2629 0 0 I 99 * * * * * * * 675 * * * * * * * * * 1421 * * 99 0 * * * * * * 2629 0 0 T 100 * * 3220 * * * 3363 * 3012 * * * * * * * 574 * * * 100 0 * * * * * * 2629 0 0 R 101 * * * * * 1376 * * 3012 * * * * * 1027 * * * * * 101 0 * * * * * * 2629 0 0 S 102 * * * * * * * * * 3363 * * * * * 148 * * * * 102 0 * * * * * * 2629 0 0 T 103 * * * * * * * * * 417 * * * * 3012 * 2976 * * * 103 0 * * * * * * 2629 0 0 N 104 * * * * * * * * * * * 0 * * * * * * * * 104 0 * * * * * * 2629 0 0 R 105 2104 3012 * 1697 * 3051 * * * 3519 * * * * 2976 * * * * * 105 0 * * * * * * 2629 0 0 E 106 * * * 0 * * * * * * * * * * * * * * * * 106 0 * * * * * * 2629 0 0 L 107 * * * * * * * * * 0 * * * * * * * * * * 107 0 * * * * * * 2629 0 0 N 108 * * * * * * * * 2779 * * 1428 * * * 3363 1376 * * * 108 0 * * * * * * 2629 0 0 H 109 * * 1414 * * * 2013 * * 3012 * 2779 * * * * * 3220 * * 109 0 * * * * * * 2629 0 0 H 110 * * * * * * 2976 * 3363 3266 * * 2104 2362 * 2031 * * * * 110 0 * * * * * * 2629 0 0 L 111 * * * * * * 1794 * * 2013 * 1408 * * 3524 * * * * * 111 0 * * * * * * 2629 0 0 Y 112 * * * * * * * * * * * * * * * * * * * 0 112 0 * * 0 * * * 2629 0 0 //