HHsearch 1.5 NAME c5n5pB_ FAM FILE c5n5pB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5n5pB_.a3m DATE Sat Mar 3 08:31:49 2018 LENG 87 match states, 87 columns in multiple alignment FILT 125 out of 225 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4913 2.2509 SEQ >ss_dssp CCCBCCCTTCTTCSSCCSHHHHHHHHHHHHCGGGSCCCHHHHHHHCCBSCSCTTCCCBCGGGCCCCHHHHHHHHHHHTTSCCSCBCC >sa_dssp EEDCEBECABACDDEEDDEDABECACDBCEDEEDCEBDECACAAABACDCDCDECCECCBEECEBDDDAADBADDCCEEECEBCCEE >ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC >ss_conf 987556224404898705999999999950744568797787642546888744232444544438899999999986451277889 >Consensus xxaxxxxyGDxNxDGxVnxxDxxlikxyllnxxkxxltxxgxxnADVxxxGxgxgxxxdxxxxkitxxDaxxIkkYlLxlIslPxxg >c5n5pB_ HMASKPVWGDVNCDGDVNVADVVLLNKWLNNNADYAMTDQGKVNADCFNPQDANGGAVDASKVDLTKTDSDAIIKSVVHLITLPAKG >UniRef50_UPI0001C37642(117-193:193) hypothetical protein RflaF_08620 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37642 E=4e-09 s/c=0.81 id=36% cov=86% ------VYGDANIDGTVDISDAVLIMQNLSNPSKYgeNGTDKAHITAKGIKYGDVSGN-----GDGLTNKDALAIQRYMLKLIsSLPE-- >UniRef50_UPI0001C37F1A(469-537:666) FNIP n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37F1A E=8e-12 s/c=1.04 id=35% cov=78% ------LYGDVNCDGVVDIEDATLLKSYLAD-SKIKISPQGLINADVYHPGLG-----------LDEVDTEFIMKSINGEAAIPV-- >UniRef50_A3DD46(508-580:582) Cellulosome enzyme, dockerin type I n=3 Tax=Clostridium thermocellum RepID=A3DD46_CLOTH E=2e-11 s/c=0.96 id=35% cov=83% ---DKPVkYGDLNGDNNVNSTDLTLLKRYLTRVINDFPHPDGSVNADVNGDG------------KINSTDYSAMIRYILRIIdKFPAE- >UniRef50_B8I0L4(685-742:746) Carbohydrate binding family 6 n=2 Tax=Clostridium RepID=B8I0L4_CLOCE E=0.0004 s/c=0.80 id=27% cov=68% --------GDVNSDGQIDAIDLQLIKKYILGLGEI----ENIKTADLDGNGD------------VNAIDFSLMKQYLLGLIT----- >UniRef50_UPI0001C37335(787-848:1226) carbohydrate-binding family 6 protein n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37335 E=0.0001 s/c=0.76 id=25% cov=72% --SSDFIYGDLNYDGRVDVFDMILMRQELVSGELDRST---KRRADVDADG------------KIGAADAVQLQSFLLK-------- >UniRef50_UPI0001C37C05(189-253:262) SCP-like extracellular n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37C05 E=0.0003 s/c=0.71 id=25% cov=75% --------GDINGDAEIDTFDLITVNQYLADDTAF-LNDLQVESADMLKDN------------AITSADAMVLRKYILGEYkTLPV-- >UniRef50_A3DK52(238-294:375) Peptidase S8 and S53, subtilisin, kexin, sedolisin n=5 Tax=Clostridium thermocellum RepID=A3DK52_CLOTH E=0.0004 s/c=0.80 id=29% cov=28% --------GDIDGNGEISSIDYAILKSHLIN-------------------------------------------------------- >UniRef50_A5KNV3(562-627:629) Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNV3_9FIRM E=0.0009 s/c=0.68 id=25% cov=70% --------GDVDANSKVDVGDVRTALRYICK--KTNLTETQMKAGDVTGD------------EKVTIEDLRKILRYVCKKIT----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 0 * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 M 2 * * * * * * * * * 1532 1640 * * * * * * 1585 * * 2 0 * * * * * * 1986 0 0 A 3 590 * * * * 3890 * * * * * * * * * 2483 3482 * * * 3 0 * * * * * * 3150 0 0 S 4 2321 * 3739 3134 * 3357 * * * * * * 3899 4290 * 1500 4580 * * * 4 0 * * * * * * 3329 0 0 K 5 4982 * 2492 1608 * * * * 2059 * * 3358 * 3746 * * 5281 * * 5341 5 0 * * * * * * 3482 0 0 P 6 3779 * * * 4278 5178 * 2128 3202 3415 * * 2339 * 5176 4370 3822 3790 * * 6 0 * * * * * * 3479 0 0 V 7 * * 5824 * * * * 2498 * 1279 5610 5537 * * 4816 * 3883 2013 * * 7 11 7006 * 0 * * * 3618 1000 0 W 8 * * * 6335 5727 * * 3644 5913 4091 * 5095 * * * * * 3971 2986 751 8 0 * * * * * * 3654 0 0 G 9 * * * * * 0 * * * * * * * * * * * * * * 9 0 * * * * * * 3915 0 0 D 10 * * 0 * * * * * * * * * * * * * * * * * 10 0 * * * * * * 3915 0 0 V 11 1955 * * * 6135 * * 3143 * 2559 * * * * * 5844 5028 1438 * 5175 11 0 * * * * * * 3915 0 0 N 12 * * 2841 * * * * * * * * 294 * * * 5309 * 5675 * * 12 0 * * * * * * 3915 0 0 C 13 3450 2541 5796 4905 5914 1730 * 5416 5152 3718 5780 3638 * 6997 5601 3925 * 4943 * 6101 13 0 * * * * * * 3915 0 0 D 14 * * 320 * * * * * * * * 2613 * * * 4815 * * * * 14 0 * * * * * * 3915 0 0 G 15 5360 6576 6854 5828 6665 425 * * 4588 6900 * 4061 * * 6243 4517 5831 * * * 15 0 * * * * * * 3915 0 0 D 16 4204 * 4256 3813 * 5803 * 3386 2000 5804 * 3168 * 4274 4499 3483 3846 3912 * 6931 16 0 * * * * * * 3915 0 0 V 17 6588 * * * * * * 1859 * 5470 6484 * * * 6435 * 5089 645 * * 17 0 * * * * * * 3915 0 0 N 18 * * 1185 5912 * * * * * * * 1188 * * 5818 3963 5450 * * * 18 0 * * * * * * 3915 0 0 V 19 2449 * 4712 * * 6213 * 2551 * 3705 3632 * * * * 1704 5334 3244 * * 19 0 * * * * * * 3915 0 0 A 20 3109 * 5129 5774 5259 5361 * 3289 * 2865 5450 5180 * * 6213 2018 2315 5259 * 6743 20 0 * * * * * * 3915 0 0 D 21 * * 0 * * * * * * * * * * * * * * * * * 21 0 * * * * * * 3915 0 0 V 22 2061 6930 * * 3330 * * 5372 * 2050 4395 * * 5287 * 4030 6237 3481 * 2737 22 0 * * * * * * 3915 0 0 V 23 2440 * * * * 5988 * 4156 * 3870 3904 4973 * 5458 4841 3557 3493 1534 * * 23 0 * * * * * * 3915 0 0 L 24 3187 6242 * * 4365 * * 3368 4883 1267 3434 * * * 6690 6071 4339 4180 6325 4382 24 0 * * * * * * 3915 0 0 L 25 5774 6282 * * 5098 6462 * 1405 * 1587 3106 * * * * * * 3536 * 5995 25 0 * * * * * * 3915 0 0 N 26 * * * * * * * * 1062 4841 2027 4180 * 5325 3686 5096 6227 5287 * 6084 26 0 * * * * * * 3915 0 0 K 27 6455 * 4528 * * 5885 * * 2694 * 5129 5269 * 1480 1889 3877 5448 * * * 27 0 * * * * * * 3915 0 0 W 28 4442 5650 * 6095 4528 6937 3294 6136 * 5119 * 6323 * 6897 * 2772 5085 * 5588 984 28 9 * 7279 * * * * 3912 0 0 L 29 * * * * 5493 6075 * 1710 * 981 5214 * * 6599 * 5281 * 3510 * * 29 13 * 6845 * * * 0 3908 0 1000 N 30 2894 4656 * * 6121 * 6588 3927 * 1263 4923 3656 * * * 2493 6558 5794 * * 30 62 * 4570 * * 964 1037 4734 0 1515 N 31 * * 3668 * * 2263 * * 3092 * * 1407 * 6204 2833 4399 * * * 5850 31 144 * 3395 * * * 0 4724 0 2383 N 32 5059 * 5347 4544 * 4258 * 5508 4472 6940 6209 3125 1345 3849 * 3485 5075 4576 * 5447 32 34 * 5441 * * 1340 725 4573 0 3275 A 33 4211 * 4129 4945 * 3822 * 2448 6204 4074 * 3948 * * 6093 1640 3712 4240 * * 33 134 5373 3955 2672 246 838 1183 4569 1467 3009 D 34 3834 * 4181 4102 * * * 5187 1342 4046 6942 4319 * 4900 4247 3667 4092 5303 * 5212 34 151 * 3332 * * 3164 171 4632 0 2627 Y 35 6446 * 3416 4015 2326 * * 3880 5255 4306 * 4122 6066 * * 5555 3954 5172 * 1723 35 93 5218 4815 1000 1000 1422 674 4499 1000 3154 A 36 5161 * 4366 4919 2617 2825 * 6556 3910 4519 6960 3323 3888 4238 4889 4118 2978 5727 * * 36 154 3303 * 3000 193 981 1020 4518 1994 3035 M 37 * * 5817 * * 4113 * 3123 * 1500 3513 5830 2300 * * 4808 5074 4647 * 4557 37 33 5464 * 2843 217 1142 871 4658 1575 2283 T 38 4575 * 3708 5839 * 6255 6551 4783 7195 * * 4759 5850 * * 2620 955 5071 * 4852 38 66 * 4493 * * 337 2263 4662 0 1960 D 39 3529 * 2307 1589 * 3782 * 6046 5336 5848 * 4722 3990 4878 6982 3988 6474 5776 * 6186 39 76 * 4280 * * * 0 4609 0 1870 Q 40 4391 * 3467 3458 * * 6496 3189 3573 5343 * 3479 5767 1991 4666 5988 4440 4612 * 4649 40 16 * 6494 * * * 0 4531 0 2759 G 41 3016 * 4292 6372 * 1018 5736 * 6922 5252 * 3064 * 3400 * 4624 * * 6475 * 41 18 6372 * 1585 585 279 2508 4526 1000 2852 K 42 6206 * 5509 6648 5427 * 5297 4527 2092 1941 3484 6603 6081 5844 3406 3911 * 4406 6170 6198 42 11 * 6985 * * 1000 1000 4659 0 1470 V 43 2866 * 5000 3972 4984 * * 3147 2241 3066 5533 5406 * 5583 4730 5078 7333 3094 4802 * 43 25 5867 * 1585 585 1066 937 4665 1000 1496 N 44 1547 * * * 6602 * * 6021 * 6376 * 1135 * * 3653 5141 5300 5846 * 6163 44 0 * * * * 0 * 4670 0 1000 A 45 321 * * * 5727 2947 * * * * * * * * * 4861 5917 * * * 45 0 * * * * * * 4666 0 0 D 46 * * 37 * * * * * 5303 * * * * * * * * * * * 46 0 * * * * * * 4666 0 0 C 47 * 3762 * * 7034 5278 * 4476 * 3419 5446 * * * * 6437 4470 567 * * 47 23 * 5994 * * * * 4616 0 0 F 48 5583 4615 2623 6834 3804 * * 5002 * 5681 * 1752 * * * 4614 3691 2893 * 3394 48 0 * * * * * 0 3954 0 1434 N 49 3174 * 3656 3538 * 1486 5914 * 3759 5235 * 2738 * 6014 5693 4168 * 6736 * * 49 30 * 5588 * * 1039 962 3954 0 1434 P 50 4873 * 1398 * * 6159 6784 6221 7149 * * 3047 2116 7385 5347 3952 4640 5241 * 5083 50 65 * 4504 * * 1693 534 4129 0 1496 Q 51 4237 * * * * 482 * * * * * 3915 * 2691 * 6689 * * * * 51 575 * 1606 * * 1934 438 4069 0 2221 D 52 * * 1113 5443 * 5505 * * 5327 5329 * 2507 * * * 2032 * 5471 * * 52 352 * 2208 * * * 0 3698 0 3903 A 53 3399 * 3609 * * 633 * * 3384 * * * * * * * * 3594 * * 53 1385 * 696 * * * 0 3161 0 3923 N 54 * * 2083 * * * * * * * * 1796 * * * 1497 * 3038 * * 54 0 * * * * * 0 2479 0 4170 G 55 * * * * * 194 * * * * 2991 * * * * * * * * * 55 0 * * * * * 0 2479 0 4170 G 56 2028 * * * * 2800 * * 2799 * * 1777 * * * * * * 2509 * 56 254 * 2629 * * * 0 2376 0 4170 A 57 1139 * * * * 2533 * * * * * 2606 * * * * * 2259 * * 57 0 * * * * * 0 2209 0 3916 V 58 * * * * * 2259 * 2606 * * * * * * * * * 674 * * 58 274 * 2533 * * * 0 2209 0 3916 D 59 * * 0 * * * * * * * * * * * * * * * * * 59 0 * * * * * 0 2008 0 3777 A 60 2269 * * * * * * * * * * * 884 * * * * 1997 * * 60 0 * * * * * 0 2008 0 3777 S 61 884 * * * * * * * * * * 1997 * * * 2269 * * * * 61 0 * * * * 3671 118 2008 0 3777 K 62 * * 2803 * * 820 * * 2768 * * * * * * * 2800 * * * 62 0 * * * * 3583 126 2422 0 3733 V 63 3795 * 1753 2398 * * * * * * * * * * * 3287 * 1560 * * 63 0 * * * * 1432 668 3042 0 3662 D 64 4703 * 3476 3553 * 3493 * 4938 1117 * * 4029 * 5495 4546 * 3684 * * * 64 0 * * * * 138 3453 3893 0 3196 L 65 * * * * * * * 1618 * 1955 6608 * * * * * * 1300 * * 65 0 * * * * 0 * 4107 0 1000 T 66 * * 3021 5982 * 5877 * 4340 5903 * * 2337 * * * 5764 833 * * * 66 0 * * * * * * 4122 0 0 K 67 2592 * * 5247 * 5028 * 4338 4676 * 4520 1882 5346 * * 1785 * 4084 * * 67 0 * * * * * * 4122 0 0 T 68 2737 * 3046 5885 * 5017 7056 3859 2798 3745 4379 5351 * 5313 7052 4881 2177 5847 * 6870 68 73 4340 * 0 * * * 4122 1000 0 D 69 * * 0 * * * * * * * * * * * * * * * * * 69 0 * * * * * * 4122 0 0 S 70 1178 3758 * * 4253 * * * * 2744 6544 * * * * 2634 5847 * * 3421 70 0 * * * * * * 4122 0 0 D 71 2843 * 4676 3618 * 6715 * * 5238 1758 4907 3758 * 5843 4933 3982 3166 4072 * 5890 71 0 * * * * * * 4122 0 0 A 72 1483 * * 5221 4114 6244 * 4688 4610 3164 * 5848 * 5877 * 4751 3954 3280 * 3129 72 0 * * * * * * 4122 0 0 I 73 * * * * 6562 * * 821 * 1700 4528 * * * * * * 3790 * * 73 0 * * * * * * 4122 0 0 I 74 4745 * * * * * * 3494 1480 4070 5254 5890 * 1480 4201 * * * * * 74 0 * * * * * * 4122 0 0 K 75 5823 * 5291 * * * * * 1173 6176 4308 * * 4123 1490 4811 * * * * 75 0 * * * * * * 4122 0 0 S 76 5221 * * * 4192 * * 5736 4310 4303 * * * * * 3683 * 5823 * 508 76 0 * * * * * * 4122 0 0 V 77 * 4394 * * * * * 1742 5206 1372 3618 * * 7170 * * 5390 2966 * * 77 0 * * * * * * 4122 0 0 V 78 6727 4933 * * * * * 4081 * 414 * 5847 * * * * * 2935 * * 78 0 * * * * * * 4122 0 0 H 79 * * 5325 3628 6796 1618 2615 * 2319 * 6606 6838 * 4942 3090 5226 * * * * 79 13 6825 * 0 * * * 4096 1000 0 L 80 5029 * * 3884 * * * 3725 3241 1141 3922 * * 3658 5494 4944 6517 4480 * 6462 80 39 5211 * 786 1251 * * 4047 1412 0 I 81 5589 * * * * 4158 * 455 * 6770 * * * * * * 4680 3239 5864 5462 81 727 1337 * 0 * * * 4044 3083 0 T 82 4971 * 6343 3428 5372 * * * 2837 * * 4525 * * * 1520 1706 * * * 82 327 2303 * 0 * * * 3832 2705 0 L 83 5900 * * * 2428 * * 2700 * 668 * * * * * * * 6135 * * 83 65 4509 * 0 * * * 3687 1532 0 P 84 * * * * * * * * * * * * 0 * * * * * * * 84 0 * * * * * * 3633 0 0 A 85 2617 * * 1701 * 4332 * * * 5904 * * * 4663 * * 3644 1689 * 4897 85 0 * * * * * * 3617 0 0 K 86 * * * 1558 * * * * 1201 * 4830 * * 2394 * * * * * * 86 0 * * * * * * 3019 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * 0 * * * 2174 0 0 //