HHsearch 1.5
NAME  c5n4cG_
FAM   
FILE  c5n4cG_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c5n4cG_.a3m 
DATE  Sat Nov  4 08:21:30 2017
LENG  33 match states, 33 columns in multiple alignment
FILT  1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.4987  3.7627 
SEQ
>ss_dssp
CTGGGGSSCSCSSSCCCSGGGGCCTTTTTTTCC
>sa_dssp
EEEDDEEEDECEDEEBECDECEECEECEEEEEE
>ss_pred
CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCC
>ss_conf
987420004553388643888876664266669
>Consensus
dtnatrlpiwgigcnpwtaehvdqtlasgndic
>c5n4cG_
DTNATRLPIWGIGCNPWTAEHVDQTLASGNDIC
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
D 1    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

T 2    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

N 3    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

A 4    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

T 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

R 6    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

L 7    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

P 8    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

I 9    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

W 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	10
       0	*	*	*	*	*	*	1000	0	0	

G 11   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

I 12   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

G 13   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

C 14   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

N 15   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

P 16   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

W 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	17
       0	*	*	*	*	*	*	1000	0	0	

T 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

A 19   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

H 21   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

V 22   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

D 23   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1000	0	0	

Q 24   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1000	0	0	

T 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	25
       0	*	*	*	*	*	*	1000	0	0	

L 26   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1000	0	0	

A 27   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1000	0	0	

S 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	28
       0	*	*	*	*	*	*	1000	0	0	

G 29   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1000	0	0	

N 30   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1000	0	0	

D 31   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1000	0	0	

I 32   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	32
       0	*	*	*	*	*	*	1000	0	0	

C 33   *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	33
       0	*	*	0	*	*	*	1000	0	0	

//