HHsearch 1.5 NAME c5mwwA_ FAM FILE c5mwwA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5mwwA_.a3m DATE Sat Jun 17 08:23:30 2017 LENG 76 match states, 76 columns in multiple alignment FILT 58 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.3861 -0.7655 SEQ >ss_dssp CCCCCTTSCCCHHHHHHHHHHHHHHHSEEEHHHHHHHGGGSCCCHHHHHHHHHHHHHHTCEEECSSCCCSSTTCCC >sa_dssp EEEDDEEEECCCCBACDCACECADECCBABDECADDDBEECECEEEDBDEBCEDADEDDBECBDEEDCEDCEEEEE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCC >ss_conf 9865331267799999999999987187479999984791368999999999999986976760785523144229 >Consensus xxxxxxxxelxxxxvxkxLIxxGKkrGxLTyxeIndxLpxxxxxxeqIdxixxxLxdxGIxVvdxxxexexlxxhx >c5mwwA_ ADKQTHETELTFDQVKEQLTESGKKRGVLTYEEIAERMSSFEIESDQMDEYYEFLGEQGVELISENEETEDLEHHH >UniRef50_A0L5T1(2-69:683) RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM E=4e-15 s/c=1.21 id=26% cov=91% -DGKSNMAEDTKREDMKKLIARGKERGFLTYDEVNDVLPNDMTSAEDMEDVVGLLDNMGIDLIDDEREE------- >UniRef50_C0R506(5-71:650) RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR E=1e-11 s/c=1.06 id=26% cov=89% -----NDAEDKKKIIKDLVTKSIKKGGFITFDDINDKLSDENFSSDFIDDAISLLQDSGINVLESSEDEEDI---- >UniRef50_B8GCU9(18-71:398) RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD E=3e-08 s/c=1.11 id=30% cov=62% ----------------QALIAQGRQQGFVTFEDIQRLVPNLEESVEQIDSIYAALAEAGVPV-------------- >UniRef50_Q1LEA3(11-65:617) RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME E=0.0006 s/c=0.82 id=30% cov=70% ------------------LVALGSERGFLTHGEISDALPDSDFG-----QIQRVLEELGVQIVERTLANEPirLEEH- >UniRef50_A9W0B8(68-130:718) RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP E=1e-12 s/c=1.18 id=29% cov=83% -DQPTDGPLLDLtDAAVKRMVKLAKKRGYVTYEEINEVLPDGQVDGDQIEDVLAQLDDMGIRVV------------- >UniRef50_Q6AK94(2-65:447) RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS E=2e-08 s/c=0.95 id=26% cov=76% ------ELSLVQTELKEKLLETGKKEGCISFDALNKLIPDDVKDPTAIEKIFNFLGAHGIEIV------------- >UniRef50_Q1ATP3(4-65:366) RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD E=1e-06 s/c=0.88 id=23% cov=79% ------EDTMMLADRAYELLSKGRSQGFLSAEDVADLVREGDLSPDEAEELYATLEEEDITLVDE----------- >UniRef50_B2V7P9(7-73:590) RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY E=7e-06 s/c=0.77 id=26% cov=76% ------------------LINLAREKGYVTYAEISTYVEEEFFSSDEnIESLIEYLNELNIDVRDDekiKSEDEDISEH- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1219 0 0 D 2 * * 304 * * * * * * * * * * * 2396 * * * * * 2 0 * * * * * * 2293 0 0 K 3 * * * * * 1416 * * 1646 * * * * 2632 * 2792 * * * * 3 0 * * * * * * 2469 0 0 Q 4 2576 * * * * * * * 1509 * * * 2632 1646 * * * * * * 4 0 * * * * * * 2469 0 0 T 5 * * * * * * * * * * * * * 2792 * 2272 625 * * * 5 0 * * * * * * 2469 0 0 H 6 * * 2178 * * * 3288 2193 * * * 1127 * * * * * * * * 6 0 * * * * * * 2876 0 0 E 7 * * 2133 1160 * 2653 * * * * 3464 3736 * * * * * * * * 7 0 * * * * * * 3497 0 0 T 8 2632 * 2233 * * * * * * 3113 * * 2122 * * 3736 2282 * * * 8 0 * * * * * * 3497 0 0 E 9 * * * 952 * * * * * 2856 * * * 3866 * 3326 2499 * * * 9 0 * * * * * * 3662 0 0 L 10 * * 2442 * 3919 * * * * 907 2207 * * * * * * * * * 10 0 * * * * * * 3711 0 0 T 11 * * 3334 3728 * * * * 1802 * 3367 * * * * 4112 1753 3520 * * 11 0 * * * * * * 3841 0 0 F 12 * * * 2922 3155 * * * 2638 1349 * * * 3520 * * * 3117 * * 12 151 3334 * 0 * * * 3841 1279 0 D 13 3578 * 1868 2404 * 4612 3848 * 3413 * * * * * 2519 * 3744 * * * 13 0 * * * * * * 3804 0 0 Q 14 2996 * 2321 2592 * * * 3561 * * * * * 1792 4104 * 4605 4797 * * 14 0 * * * * * * 4019 0 0 V 15 3180 * 4389 * * 4576 * 2454 * 3249 * * * * 3777 * 3887 1428 * * 15 0 * * * * * * 4019 0 0 K 16 3777 * * * 4513 * * * 1129 3887 4389 * * * 4531 * * 1903 * * 16 86 4104 * 0 * * * 4019 1000 0 E 17 * * 3527 1889 * * * * 988 * * * * 3623 5427 * * * * 4851 17 38 * 5253 * * * * 4284 0 0 Q 18 2785 * 3752 2619 * 4973 * * 2050 4408 * 5722 * 2474 4701 5284 * * * 4852 18 0 * * * * 0 * 4335 0 1000 L 19 * * * * 5263 * * 3917 * 293 4182 * * * * * * 4770 * * 19 0 * * * * * * 4538 0 0 T 20 * * * * * * * 903 * 2502 4031 * * * * * 3921 2630 * * 20 0 * * * * * * 4557 0 0 E 21 1855 * 5873 2071 * 4783 * * 2803 6372 * 4810 * 4462 5454 3347 4306 5362 * * 21 0 * * * * * * 4557 0 0 S 22 4252 * 5362 3928 * * * 4397 2081 1639 6193 * * 3880 4678 4306 4001 5730 * * 22 0 * * * * * * 4557 0 0 G 23 2478 * * * * 394 * 4779 * * * * * * * 5454 * * * * 23 18 6302 * 0 * * * 4557 1000 0 K 24 * * * * * * * * 402 4921 * 5624 * * 2912 4951 * 5342 * * 24 0 * * * * * * 4557 0 0 K 25 4506 * * 1572 * * * * 1472 * * 5355 * 3686 5667 4075 3682 * * * 25 0 * * * * * * 4557 0 0 R 26 5771 * * 4408 * 4348 * * 2214 * * 4033 * 2210 1349 * * * * * 26 34 5407 * 0 * * * 4557 1000 0 G 27 * * * * * 47 * * * * * * * * * 4966 * * * * 27 0 * * * * * * 4557 0 0 V 28 * 5113 * 4788 1398 * 5781 5344 6057 * * * * * * 4292 5407 3856 * 1498 28 0 * * * * * * 4557 0 0 L 29 * * * * * * * 2474 * 723 * * * * * * * 2222 * * 29 0 * * * * * * 4557 0 0 T 30 * * * * * * * * * * * 4966 * * * 3480 228 5355 * * 30 0 * * * * * * 4557 0 0 Y 31 5395 * * 5346 2405 * 2721 5915 * 5732 5218 * * * 5368 * * 5961 * 975 31 0 * * * * * * 4552 0 0 E 32 2543 * 1536 2145 * 3037 * * 4968 * * 4238 * 6234 5733 * 5759 * * * 32 0 * * * * * * 4552 0 0 E 33 5116 * 1480 900 * * * * 5346 * * * * 4258 * * * * * * 33 0 * * * * * * 4552 0 0 I 34 * * * * * * * 760 * 1993 * * * * * * * 2659 * * 34 0 * * * * * * 4552 0 0 A 35 2856 * 5461 * * * * 3849 * 4048 3965 995 * 5501 * 3551 * 4794 * * 35 0 * * * * * * 4552 0 0 E 36 4283 * 1147 2175 * * * * 3154 * * 4489 * 4499 4612 6251 5607 * * * 36 0 * * * * * * 4552 0 0 R 37 1939 * * * * * 2904 4842 3533 2644 5961 5775 * 6208 4208 3555 5733 3686 * 4619 37 0 * * * * * * 4552 0 0 M 38 * * * * 4402 * * 3986 * 407 3853 * * * * * * 3913 * * 38 0 * * * * * * 4552 0 0 S 39 4346 * * 4717 * * * * * * * 6021 626 3520 5395 3064 5732 * * * 39 0 * * * * * * 4552 0 0 S 40 3810 * 1775 3323 * 3230 * * 5408 * 5945 2820 3016 4685 * 3536 * * * * 40 0 * * * * * * 4552 0 0 F 41 5670 5759 1745 2480 3262 3981 * 5733 4984 5501 * 4630 5453 4515 * 3177 * 5227 * * 41 17 * 6390 * * * * 4552 0 0 E 42 5401 * 2145 2676 3586 * * 3159 * 4365 4689 4777 * 5140 * 4764 4027 3202 * 4659 42 52 4816 * 665 1438 0 * 4559 1564 1000 I 43 3301 * 4886 4479 3308 * 5453 3170 5116 2782 4376 * * 4968 * 5368 4283 2058 * 6063 43 35 5368 * 0 * * * 4552 1000 0 E 44 6390 * 1778 3224 * 6091 4496 * * * * 3532 5837 5011 * 1653 3690 * * * 44 21 * 6091 * * * * 4552 0 0 S 45 3015 * * * * 5121 * 5430 * * * 5317 1594 3771 * 1786 3598 5492 * * 45 37 5317 * 0 * * 0 4547 1000 1000 D 46 4793 * 1409 1352 * 5517 * * 4506 * * 4380 * 5138 * 5355 5112 * * * 46 0 * * * * * 0 4547 0 1000 Q 47 3259 5317 3079 3226 4775 5517 * * 3978 4597 * * * 1318 4489 5429 6226 * * * 47 30 5587 * 0 * * 0 4547 1000 1000 M 48 5387 * * * * * * 869 * 3073 2572 * * * * * * 3492 * 4246 48 0 * * * * * 0 4547 0 1000 D 49 5274 * 976 1102 * * * * * * * * * * * * * * * * 49 0 * * * * 0 * 4547 0 1000 E 50 3848 * 1673 2021 * 3797 * * 5116 * * 4541 * 3799 5461 4172 4429 5033 * * 50 0 * * * * * * 4552 0 0 Y 51 4537 * * * 3863 * * 1515 * 2342 5408 * * * * * 3490 2629 6279 4208 51 0 * * * * * * 4552 0 0 Y 52 5540 * * 5368 3930 * 5461 2298 * 2837 2476 * * 4671 5830 * * 3523 * 2328 52 0 * * * * * * 4552 0 0 E 53 2385 * 3557 2516 * 3527 * 5945 5759 * 5775 4413 * 3848 5376 2354 4820 4730 * * 53 0 * * * * * * 4552 0 0 F 54 2516 * * 5461 4078 * 3756 4411 5346 3373 2735 * * 4006 4248 5453 3106 4389 * 4341 54 0 * * * * * * 4552 0 0 L 55 * * * * 3418 * * 3765 * 307 * * * * * * * 5346 * * 55 0 * * * * * * 4552 0 0 G 56 3809 * 4634 3003 * 2328 5746 5368 * * * 2668 * 3070 4328 3020 3792 * * * 56 0 * * * * * * 4552 0 0 E 57 3713 * 1416 1703 * 4916 5631 * 4435 * * 4053 * 5775 5733 5144 5899 * * * 57 0 * * * * * * 4552 0 0 Q 58 3112 * * 3457 * * 4278 5163 * 2505 1643 5122 * 4066 5408 3766 * 4966 * * 58 0 * * * * * * 4552 0 0 G 59 5144 * 3349 5456 * 300 * * 5775 * * 5607 * * * * * * * * 59 0 * * * * * * 4552 0 0 V 60 * * * * 5144 * * 283 * * * * * * * * * 2741 * * 60 0 * * * * * * 4552 0 0 E 61 3506 * 2408 1967 * 4715 * * 4301 * * 2605 5455 4274 4269 4786 4266 * * * 61 0 * * * * * * 4528 0 0 L 62 * * * * * * * 1752 * 2919 * * * * * * * 809 * * 62 0 * * * * * * 4504 0 0 I 63 * * * * 5762 * 4856 2738 * 2608 * * * * 4422 * * 991 * 3582 63 0 * * * * * * 4391 0 0 S 64 * * 1382 1501 * 5311 * * 4867 * * 3307 3702 * * 5285 * * * * 64 0 * * * * * * 4196 0 0 E 65 4498 * 3051 1875 5038 * * * 3798 * * * * 2616 3447 2707 5761 4886 * * 65 59 4651 * 1585 585 * * 4196 1000 0 N 66 1739 * 4523 4045 * * * 3904 2696 * * 2918 * * * 2875 3228 * * * 66 0 * * * * * * 4032 0 0 E 67 4949 * 1805 2494 * 4844 * * * 4788 * * 1629 * 5041 4371 5020 * * * 67 0 * * * * * * 3999 0 0 E 68 4537 * 1949 1254 * 4637 * * * * * 4872 * 4330 * 3150 4580 * * * 68 0 * * * * * * 3914 0 0 T 69 1984 * 3186 1929 * 4490 * * * 3019 * 4516 * * * 3555 4737 4626 * * 69 0 * * * * * * 3845 0 0 E 70 * * 1701 530 * * * * * * * * * * * * * * * * 70 0 * * * * * * 3796 0 0 D 71 2567 * 1476 * * * * * * * * 3897 4068 * * 4204 2007 4577 * * 71 115 3703 * 1000 1000 * * 3604 1000 0 L 72 * * 3333 * * * * 1902 * 659 * * * * * * * * * * 72 0 * * * * * * 3397 0 0 E 73 * * 2913 616 * * * * * * * * * * * 2219 * * * * 73 0 * * * * * * 2696 0 0 H 74 * * * 620 * * 1517 * * * * * * * * * * * * * 74 0 * * * * * * 2068 0 0 H 75 * * * * * * 0 * * * * * * * * * * * * * 75 0 * * * * * * 2068 0 0 H 76 * * * * * * 0 * * * * * * * * * * * * * 76 0 * * 0 * * * 1000 0 0 //