HHsearch 1.5 NAME c5mmi6_ FAM FILE c5mmi6_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5mmi6_.a3m DATE Thu Feb 9 15:13:55 2017 LENG 49 match states, 49 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.5 EVD 0.4609 1.2019 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTC >sa_dssp EEEEEEEDEEEEDEDDEEEEDEDDECDEDDECDEEECCDEEEDEEEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC >ss_conf 9258999999999989889999887788886564159986898863089 >Consensus sklqlklexkxkmklakkirlrrxxlxxkrxlrkrgxwppskmkklknv >c5mmi6_ SKLQLKLEQKMKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV >UniRef50_P27684(94-142:142) 50S ribosomal protein 5 gamma, chloroplastic n=1 Tax=Spinacia oleracea RepID=PSRP5_SPIOL E=4e-09 s/c=1.27 id=84% cov=102% SKLQLKLEQKIKMKMAKKIRLRRTGLCAKESLRKRGAWPPSKMKKLKNV >UniRef50_B9HDS4(93-141:141) Predicted protein n=2 Tax=Populus trichocarpa RepID=B9HDS4_POPTR E=2e-09 s/c=1.30 id=74% cov=102% SKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV >UniRef50_P11891(97-145:145) 50S ribosomal protein 5, chloroplastic n=1 Tax=Pisum sativum RepID=PSRP5_PEA E=5e-07 s/c=1.13 id=64% cov=102% SKLKEREERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1460 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1460 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1460 0 0 Q 4 * * * * * * * * 1790 * * * * 492 * * * * * * 4 0 * * * * * * 1460 0 0 L 5 * * * 1790 * * * * * 492 * * * * * * * * * * 5 0 * * * * * * 1460 0 0 K 6 * * * * * * * * 492 * * * * * 1790 * * * * * 6 0 * * * * * * 1460 0 0 L 7 * * * 1790 * * * * * 492 * * * * * * * * * * 7 0 * * * * * * 1460 0 0 E 8 * * * 0 * * * * * * * * * * * * * * * * 8 0 * * * * * * 1460 0 0 Q 9 * * * * * * 1952 * * * * * * 1144 1790 * * * * * 9 0 * * * * * * 1460 0 0 K 10 * * * * * * * * 492 * 1790 * * * * * * * * * 10 0 * * * * * * 1460 0 0 M 11 * * * * * * * 2091 * 1790 1070 * * * * * * * * * 11 0 * * * * * * 1460 0 0 K 12 * * * * * * * * 0 * * * * * * * * * * * 12 0 * * * * * * 1460 0 0 M 13 * * * * * * * * * * 0 * * * * * * * * * 13 0 * * * * * * 1460 0 0 K 14 * * * * * * * * 0 * * * * * * * * * * * 14 0 * * * * * * 1460 0 0 M 15 * * * * * * * * * 869 1144 * * * * * * * * * 15 0 * * * * * * 1460 0 0 A 16 431 * * * * 1952 * * * * * * * * * * * * * * 16 0 * * * * * * 1460 0 0 K 17 * * * * * * * * 0 * * * * * * * * * * * 17 0 * * * * * * 1460 0 0 K 18 * * * * * * * * 0 * * * * * * * * * * * 18 0 * * * * * * 1460 0 0 I 19 * * * * * * * 0 * * * * * * * * * * * * 19 0 * * * * * * 1460 0 0 R 20 * * * * * * * * * * * * * * 0 * * * * * 20 0 * * * * * * 1460 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1460 0 0 R 22 * * * * * * * * 1790 * * * * * 492 * * * * * 22 0 * * * * * * 1460 0 0 R 23 * * * * * * * * * * * * * * 431 1952 * * * * 23 0 * * * * * * 1460 0 0 N 24 * * * * * * * * 869 * * 2200 * * * * 2091 * * * 24 0 * * * * * * 1460 0 0 R 25 * * * * * 2091 * * 1952 * * * * * 980 * * * * * 25 0 * * * * * * 1460 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1460 0 0 M 27 * 2091 1952 * * * * * * * 2200 * * * * * * 1790 * * 27 0 * * * * * * 1460 0 0 R 28 2091 * * * * * * * * * * * * 1790 1070 * * * * * 28 0 * * * * * * 1460 0 0 K 29 * * * * * * * * 0 * * * * * * * * * * * 29 0 * * * * * * 1460 0 0 R 30 * * * 2091 * * * * * * * * * * 386 * * * * * 30 0 * * * * * * 1460 0 0 K 31 * * * * * 1952 * * 2200 * * * * * 1790 2091 * * * * 31 0 * * * * * * 1460 0 0 L 32 * * * * * * * * * 431 1952 * * * * * * * * * 32 0 * * * * * * 1460 0 0 R 33 * * * * * * * * * * * * * * 0 * * * * * 33 0 * * * * * * 1460 0 0 K 34 * * * * * * * * 0 * * * * * * * * * * * 34 0 * * * * * * 1460 0 0 R 35 * * * * * * * * 1790 * * * * * 492 * * * * * 35 0 * * * * * * 1460 0 0 G 36 * * * * * 0 * * * * * * * * * * * * * * 36 0 * * * * * * 1460 0 0 A 37 1144 * * * * * * * * * * 1790 * 1952 * * * * * * 37 0 * * * * * * 1460 0 0 W 38 * * * * * * * * * * * * * * * * * * 0 * 38 0 * * * * * * 1460 0 0 P 39 * * * * * * * * * * * * 0 * * * * * * * 39 0 * * * * * * 1460 0 0 P 40 * * * * * * * * * * * * 0 * * * * * * * 40 0 * * * * * * 1460 0 0 S 41 * * * * * * * * * * * * * * * 0 * * * * 41 0 * * * * * * 1460 0 0 K 42 * * * * * * * * 0 * * * * * * * * * * * 42 0 * * * * * * 1460 0 0 M 43 * * * * * * * * * * 431 * * * * * * 1952 * * 43 0 * * * * * * 1460 0 0 K 44 * * * * * * * * 431 * * 1952 * * * * * * * * 44 0 * * * * * * 1460 0 0 K 45 * * * * * * * * 0 * * * * * * * * * * * 45 0 * * * * * * 1460 0 0 L 46 * * * * * * * * * 0 * * * * * * * * * * 46 0 * * * * * * 1460 0 0 K 47 * * * 1790 * * * * 492 * * * * * * * * * * * 47 0 * * * * * * 1460 0 0 N 48 * * * * * 1790 * * * * * 492 * * * * * * * * 48 0 * * * * * * 1460 0 0 V 49 * * * * * * * * * * * * * * * * * 0 * * 49 0 * * 0 * * * 1460 0 0 //