HHsearch 1.5 NAME c5mmi5_ FAM FILE c5mmi5_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5mmi5_.a3m DATE Thu Feb 9 17:16:34 2017 LENG 37 match states, 37 columns in multiple alignment FILT 27 out of 31 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.1 EVD 0.4789 2.7829 SEQ >ss_dssp CEEESCCCCCSSSCEEEEETTEEEEECSSGGGCEEEC >sa_dssp EDDDEDBEDDDEEBEEDEDEDDCBADCEDEECDACDE >ss_pred CCCHHHHHHHHCCCEEEEECCEEEEEECCCCHHHCCC >ss_conf 9511357877218879998786999940884010069 >Consensus mKVRxSVKkxCxxCkxirRxgrvxViCxnpkHKQRQG >c5mmi5_ MKIRASVRPICEKCRLIRRRGRIIVICSNPKHKQRQG >UniRef50_A4XBM2(1-37:37) 50S ribosomal protein L36 n=4 Tax=cellular organisms RepID=RL36_SALTO E=1e-06 s/c=1.48 id=63% cov=103% MKVKPSVKRICNKCRVIRRHGRVMVICADPRHKQRQG >UniRef50_A6BM48(1-37:37) 50S ribosomal protein L36, chloroplastic n=3 Tax=Viridiplantae RepID=RK36_GNEPA E=7e-06 s/c=1.39 id=63% cov=103% MKVRASVRKICSKCQLIWRGKRLSVVCVNPRHKQKQG >UniRef50_C1A4J4(1-38:38) 50S ribosomal protein L36 n=25 Tax=cellular organisms RepID=RL36_GEMAT E=3e-05 s/c=1.32 id=61% cov=103% MKVRSSVKPICEHCKVVKRQGVTRIICKrNPKHKQRQG >UniRef50_C5P445(75-112:113) Ribosomal protein L36 n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5P445_COCP7 E=5e-05 s/c=1.29 id=58% cov=103% MKTRSSVKRLCDGCKPVRRKNRVYIICSkNPKHKQRQG >UniRef50_C1N9S2(1-38:101) Ribosomal protein L36 (Fragment) n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N9S2_9CHLO E=8e-05 s/c=1.27 id=47% cov=103% LQVRSALKKMCESCRFVKRKGRVYVVCDKvPKHKQRQG >UniRef50_C4Y7W3(78-115:115) Ribosomal protein L36 n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y7W3_CLAL4 E=0.0002 s/c=1.24 id=55% cov=103% FKVRTSVKKFCKDCYMVRRKGRVYVYCkSNGKHKQRQG >UniRef50_C0Q9V1(1-37:37) 50S ribosomal protein L36 n=2 Tax=cellular organisms RepID=RL36_DESAH E=0.0003 s/c=1.26 id=58% cov=103% MKVRASVKKICKDCKIIRRKGVIRVICITKRHNQRQG >UniRef50_A5IMA7(1-38:38) 50S ribosomal protein L36 n=250 Tax=cellular organisms RepID=RL36_THEP1 E=0.0003 s/c=1.22 id=58% cov=103% MKVQASVKKRCEHCKIIRRKKRVYVICKvNPKHNQKQG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * 2953 * * * * 3688 397 * * * * * * 4891 * * 1 0 * * * * * * 2110 0 0 K 2 * * * * * * * * 117 * * * * 3688 * * * * * * 2 0 * * * * * * 2110 0 0 I 3 * * * * * * * 4624 * * * * * * * * 4540 126 * * 3 0 * * * * * * 2110 0 0 R 4 * * * * * * * * 3857 * * * * 4326 183 * * * * * 4 0 * * * * * * 2110 0 0 A 5 1405 * * * * * * * * * * * 2714 * * 1553 2953 * * * 5 0 * * * * * * 2110 0 0 S 6 3688 * * * * * * * * * * * * * * 117 * * * * 6 0 * * * * * * 2110 0 0 V 7 * * * * * * * 4577 * 3688 * * * * * * * 184 * * 7 0 * * * * * * 2110 0 0 R 8 * * * * * * * * 199 * * * * * 2955 * * * * * 8 0 * * * * * * 2110 0 0 P 9 * 4898 * * * * * * 963 * * * 2530 * 1999 * * 5051 * * 9 0 * * * * * * 2110 0 0 I 10 * * * * 3387 * * 1185 * 2709 1933 * * * 4326 * * * * * 10 0 * * * * * * 2110 0 0 C 11 * 0 * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 2110 0 0 E 12 3693 * 2617 1282 * * * * 2763 * * 4792 * * 3796 3428 * * * * 12 0 * * * * * * 2110 0 0 K 13 * * 2484 * 4034 3294 3092 * 1790 * * 3279 * * * 3273 * * * 4464 13 0 * * * * * * 2110 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2110 0 0 R 15 * * * * * * * * 971 * * 5217 * 3527 2205 5051 * * * 2953 15 0 * * * * * * 2110 0 0 L 16 * * * * 3688 * * 2220 * 2582 4960 * 4540 * * 3953 * 1318 * * 16 0 * * * * * * 2110 0 0 I 17 * * * * * * * 933 * * * * * * * * * 1070 * * 17 0 * * * * * * 2110 0 0 R 18 * * * * * * * * 1348 * * * * * 874 * * * 4024 * 18 0 * * * * * * 2110 0 0 R 19 * * * * * * * * * * * * * * 0 * * * * * 19 42 5117 * 2585 263 * * 2110 1000 0 R 20 * * * * * 4024 2566 * 1112 * * 3796 * 4821 2325 * * * * * 20 0 * * * * * * 2110 0 0 G 21 * * * * * 309 * * 3167 * * 4540 * * 4702 * * * * * 21 0 * * * * * * 2110 0 0 R 22 * * * * * * 5117 4464 4805 * * 5031 * * 651 3894 * 2686 * * 22 0 * * * * * * 2110 0 0 I 23 * * * * * * * 3133 * 4024 * 4577 * * * * 4821 420 * * 23 0 * * * * * * 2110 0 0 I 24 * * * * 4464 * * 4624 * 5008 2480 * * * 2167 4024 * * * 1253 24 0 * * * * * * 2110 0 0 V 25 * * * * * * * 1980 * * * * * * * * * 422 * * 25 0 * * * * * * 2110 0 0 I 26 * * * * * * * 688 * 4805 * * * 4464 * * * 2563 * 2953 26 0 * * * * * * 2110 0 0 C 27 * 0 * * * * * * * * * * * * * * * * * * 27 439 1930 * 0 * * * 2110 1608 0 S 28 3618 * 3688 3363 * * * 3218 3552 * * * * * * 1347 3847 3500 * * 28 299 2417 * 0 * * * 2110 1523 0 N 29 * * 3746 4897 * * * * 3688 * * 368 * * * * 4654 * * * 29 117 3688 * 0 * * * 2110 1000 0 P 30 4464 * * * 4577 3929 * * 3812 4925 * 4965 557 * * * * 5008 * * 30 0 * * * * * * 2110 0 0 K 31 * * * * * * * * 400 * * * * * 2046 * * * * * 31 0 * * * * * * 2110 0 0 H 32 * * * * * * 0 * * * * * * * * * * * * * 32 0 * * * * * * 2110 0 0 K 33 * * * * * * * * 135 * * 3480 * * * * * * * * 33 0 * * * * * * 2110 0 0 Q 34 * * * * * * * * * * * * * 0 * * * * * * 34 0 * * * * * * 2110 0 0 R 35 * * * * * * * * 2781 * * * * * 227 * * * * * 35 0 * * * * * * 2111 0 0 Q 36 * * * * * * * * * * * * * 0 * * * * * * 36 0 * * * * * * 2111 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * 0 * * * 2111 0 0 //