HHsearch 1.5 NAME c5mknK_ FAM FILE c5mknK_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5mknK_.a3m DATE Sat Dec 23 08:25:03 2017 LENG 71 match states, 71 columns in multiple alignment FILT 107 out of 577 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4455 0.4197 SEQ >ss_dssp CCTTCTTHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEETTTCSCEEEEEEECGGGEEEEEC >sa_dssp EDEEEECCDBDEBDEDEBBACCEEEDCBCBCADDCDEECCBCACEADCDEDEEEECEECEBEBEDBDECDE >ss_pred CCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCCEECEEEECCCCEEEEEC >ss_conf 96435287899976985999992993999999999675773998899983565060579997881899999 >Consensus mxxxxPlxxLxxxxxxxVxVxlxxgxxxxGxLxxxDxxxNlvLxdxxexxxxxxxxxxvxIRGxxIxxIxl >c5mknK_ MDTQRPLDALGKSINTNVTVYLKDGKLVKGRLKAYDLHMNVALENAKIESDEEKEFPMLVVRGDNVLYVSL >UniRef50_C5PGJ8(4-72:98) U6 snRNA-associated Sm-like protein LSm2 , putative n=5 Tax=Onygenales RepID=C5PGJ8_COCP7 E=1e-09 s/c=0.93 id=23% cov=93% ------FSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKyphlSSVKNIFIRGSVVRYIVL >UniRef50_Q4P8W1(5-84:382) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P8W1_USTMA E=0.0003 s/c=0.57 id=17% cov=90% --------IIKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDETrltpegRTTIRNVGMVMIPGEYVVKVEV >UniRef50_C5LHQ6(5-85:92) Small nuclear ribonucleoprotein, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHQ6_9ALVE E=4e-11 s/c=0.85 id=24% cov=99% IQIDEPFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIEPPvkegvkhrrpirRDLDTIFVRGDGIILV-- >UniRef50_D0NG70(15-81:118) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NG70_PHYIN E=3e-06 s/c=0.79 id=23% cov=90% ------LLLLKSFVGLRVRIDLKNDSVLEGVVQEVVQDMDFTLLDACETKPNGTTlmLDEVFVMGKTVLYV-- >UniRef50_Q5CQ90(46-112:160) Small nuclear ribonucleoprotein U6 n=2 Tax=Cryptosporidium RepID=Q5CQ90_CRYPV E=6e-05 s/c=0.73 id=23% cov=85% ---------LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEvfsnnDCYNEIYQGCMIFRGDNLML--- >UniRef50_A2DLB2(1-73:76) Sm protein n=2 Tax=Trichomonas vaginalis RepID=A2DLB2_TRIVA E=2e-08 s/c=0.83 id=23% cov=100% MSAEDAMTgFLQATLQKPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEmsNGNEVGKYQSIFIRGNQVVHVA- >UniRef50_A8BRN2(6-69:78) SnRNP Sm-like protein, putative n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BRN2_GIALA E=7e-06 s/c=0.80 id=21% cov=89% --------YVQSLISTHVLVRLDNGATARGLTISIDDRCNVLLVDCTYTsGTQKSFLNEMLIRSNHILFMT- >UniRef50_Q12330(13-91:94) Small nuclear ribonucleoprotein E n=10 Tax=Saccharomycetaceae RepID=RUXE_YEAST E=0.0001 s/c=0.60 id=24% cov=93% -----PINCIFNFLQQQtpVTIWLfeQIGIRIKGKIVGFDEFMNVVIDEAveipvnsadgKEDVEKGTPLGKILLKGDNITLIT- >UniRef50_A8BZP8(1-73:90) Small nuclear ribonucleoprotein Sm D3, putative n=3 Tax=Giardia intestinalis RepID=A8BZP8_GIALA E=1e-07 s/c=0.79 id=24% cov=101% MTITAPIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTIThpTGQKETAQTVMLRGSEVRFVSV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3987 * 3447 536 * * * * * * 2685 * * 1 0 * * * * * * 4907 0 0 D 2 * * 2380 3005 * * * * * * * 2751 * 2174 * 1985 4040 * * * 2 0 * * * * * * 5184 0 0 T 3 2710 * 4438 * * * * 2750 4192 4891 4659 * 3822 3148 * 2966 2942 3595 * * 3 0 * * * * * * 5278 0 0 Q 4 * * 4658 2476 * 3480 3650 4967 3216 3932 * 4683 * 2156 * * 3598 4049 * * 4 0 * * * * * * 5366 0 0 R 5 4433 * 4759 2783 * 3824 * 4440 2630 3381 * 3124 4661 3508 4153 4779 4001 * * * 5 49 4892 * 1585 585 * * 5537 1000 0 P 6 5188 * * * * * * * * * * * 115 * * 5448 5238 * * * 6 0 * * * * * * 5971 0 0 L 7 * * * * 3115 6101 * 2159 4080 1361 4369 6267 * 5296 * 4800 4769 5723 * 5693 7 22 6055 * 1585 585 * * 6333 1000 0 D 8 4935 6361 3395 3366 * * 4365 6193 3075 4557 4896 4576 4138 4597 4145 2370 3610 5687 * 6068 8 22 6076 * 0 * * * 6417 1000 0 A 9 4757 * 6361 4908 2352 6450 6509 3608 5386 1965 5702 6607 * 6355 * 5512 * 2334 * 3731 9 16 6539 * 2585 263 * * 6662 1000 0 L 10 * * * * 4584 * * 2805 * 514 6272 * * * * * * 3485 * 6276 10 19 * 6286 * * * * 6701 0 0 G 11 4564 * 5489 3113 4300 5280 4183 * 2764 4986 5829 4289 6315 2722 2459 4114 * 5337 * 6344 11 0 * * * * 0 * 6727 0 1000 K 12 3788 6267 3890 2540 * 4634 5641 6571 2569 4729 5978 3819 * 4163 3968 2785 4425 * * * 12 0 * * * * * * 6739 0 0 S 13 2538 5065 6039 4481 2933 6169 5295 4738 * 2069 4677 7008 * * * 3476 6605 5260 5011 3511 13 15 6601 * 1000 1000 * * 6745 1000 0 I 14 6299 6330 * 5438 * * * 2448 5079 1714 3778 6002 * 4323 4755 * 5624 2207 6441 6599 14 31 5542 * 1000 1000 * * 6764 1591 0 N 15 * * 2489 3423 * 1518 4878 * 4549 * 6835 2271 6450 5174 5799 5573 6837 * * * 15 26 5786 * 1000 1000 * * 6778 1575 0 T 16 6281 * * 4038 6520 6574 3428 * 1638 5490 6552 6010 * 3961 3404 3273 3013 * * 4153 16 0 * * * * * * 6778 0 0 N 17 * 5607 7074 3384 * * 6176 4591 2827 4476 * 4925 3668 4128 2166 4011 3433 4045 * 5145 17 56 4710 * 1000 1000 * * 6778 2314 0 V 18 * * * * * * * 2061 * 3147 4375 * * * * 6332 5046 877 * 6364 18 0 * * * * * * 6778 0 0 T 19 * 6388 * 4019 4313 6972 6660 3827 3553 3325 4697 6901 * 5075 3129 3368 2685 3264 5222 5130 19 0 * * * * * * 6780 0 0 V 20 * 5196 * * * * * 1862 * 4304 * * * * * * * 628 * * 20 0 * * * * * * 6780 0 0 Y 21 5341 * 5186 1795 * * 3747 4149 2851 5513 4428 6897 * 4191 4001 5180 4330 3280 6898 7043 21 0 * * * * * * 6780 0 0 L 22 5997 4658 * * 5255 * * 3597 * 829 4493 * * * * 4992 2862 4348 * 6549 22 13 6841 * 2000 415 * * 6780 1000 0 K 23 4469 6345 5334 5935 7000 * 6123 5177 1493 5296 * 3494 6334 4130 2494 4722 4173 4897 * 6898 23 39 5212 * 439 1932 * * 6780 1770 0 D 24 5748 * 1454 3832 6319 3601 5499 6450 5490 * * 1974 * * * 3493 4261 * * * 24 0 * * * * * * 6780 0 0 G 25 * * 3026 4963 * 824 5845 * 4919 * * 2779 * 6371 7080 4187 6684 * * * 25 9 7268 * 1000 1000 * * 6780 1000 0 K 26 4920 6721 4383 3254 6454 * 5945 4715 3716 3904 6207 5270 * 5185 1782 3894 3418 4012 * 5997 26 0 * * * * * * 6780 0 0 L 27 4356 5086 5859 2814 6062 6620 * 4200 4058 4381 5233 6059 * 4370 4724 3275 2763 2877 * 4056 27 0 * * * * * * 6780 0 0 V 28 6179 * * * 2623 * * 2234 * 2132 6207 * * * * * * 3185 * 1945 28 0 * * * * * * 6780 0 0 K 29 * * 6212 3320 5215 * 6207 2871 3472 5809 * 4979 * 4287 2015 3982 3945 3217 7167 5144 29 38 5273 * 2715 238 * * 6780 2058 0 G 30 5309 * * * * 37 * * * * * * * * * * * * * * 30 0 * * * * * * 6780 0 0 R 31 * * * 5525 4961 * 4409 2920 3532 3965 5161 6707 * 4610 3443 * 1957 2762 * 4604 31 15 6620 * 2000 415 * * 6780 1000 0 L 32 * 6684 * * 3200 * * 3417 * 686 4034 * * * * 6345 6179 3661 * * 32 0 * * * * * * 6780 0 0 K 33 4741 5488 6235 3485 5364 6522 4599 3352 3288 3717 4067 5925 * 4496 3165 5312 4149 2544 * * 33 0 * * * * * * 6780 0 0 A 34 2120 3651 5460 4272 6123 2311 5787 * 6655 * * 3651 * 6187 5886 2374 4645 * * 5120 34 14 6684 * 2000 415 * * 6780 1000 0 Y 35 5318 3950 * * 1970 * * 2927 * 4139 * 6426 * * * 4618 3412 2280 * 3126 35 0 * * * * * * 6780 0 0 D 36 * * 161 3653 * 6507 * * * * * * * * * * * 6051 * * 36 14 6701 * 0 * * * 6780 1000 0 L 37 3800 * 3105 2852 * 3959 5230 6683 3104 7043 5130 3621 4943 2793 3770 3843 7027 6429 * * 37 0 * * * * * * 6780 0 0 H 38 4893 7016 3918 7167 2586 4857 2465 * 6984 5141 6282 3747 * 4886 4334 5537 4051 6334 6078 2417 38 0 * * * * * * 6780 0 0 M 39 4109 4755 * 7320 3829 3276 * 6029 6334 2817 1369 6787 * 5952 * 4899 5334 4890 6636 4607 39 0 * * * * * * 6780 0 0 N 40 * * 4657 * * 6423 5613 * * * * 162 * * * 4849 * * * * 40 0 * * * * * * 6780 0 0 V 41 * 4555 * * 4458 * * 1978 * 1462 3816 * * * * 6426 4688 2527 * * 41 0 * * * * * * 6780 0 0 A 42 5307 5318 * 5711 5238 * 4030 2472 5725 4209 5030 5790 * 6155 4662 4370 3577 1631 6546 5528 42 0 * * * * * * 6780 0 0 L 43 * * * * 6365 * * 3325 * 253 4361 * * * * * * * * * 43 0 * * * * * * 6780 0 0 E 44 6334 6025 3376 2945 6423 4814 * 6602 2684 4946 7323 4523 * 4575 3492 2887 3196 4144 * 5715 44 0 * * * * * * 6780 0 0 N 45 * 7083 1309 3272 6683 4852 5957 * 4588 6859 6648 2414 * 4412 5500 3571 * * * 5370 45 12 6963 * 0 * * * 6780 1000 0 A 46 1743 2341 * 6450 * * * 5790 * * * * 6207 * * 3741 3353 1864 6212 * 46 40 5175 * 862 1152 * * 6780 2351 0 K 47 5759 5016 4246 3020 5185 * 5904 3446 3599 6075 * * * 4411 4047 4026 2085 3068 * 5831 47 141 3550 6997 2125 376 * * 6770 4076 0 I 48 * 6090 4653 1114 7347 * 5592 2921 * * 4909 5878 * 5539 3780 6872 5409 3424 * 4190 48 333 2330 7133 2287 331 0 * 6774 5023 1000 E 49 * * 3833 3052 5398 6881 6831 4284 3548 4064 * 4300 * 4655 3613 3867 2594 3532 * 3665 49 195 2982 * 2305 326 0 * 6798 4447 1000 S 50 5817 6045 3524 4954 5677 2311 * 4373 3587 4387 6369 4617 * 4082 3776 3691 3669 4438 5507 4696 50 51 4837 * 3102 179 * * 6798 2594 0 D 51 5343 * 2880 2800 5766 4176 5734 6306 2684 * 4769 4373 3843 4239 4634 4463 4152 4484 * 4608 51 99 3914 * 2687 244 * * 6798 3580 0 E 52 4679 * 3579 1983 * 4483 6507 * 3269 4324 6586 3749 6953 3463 4211 3556 4174 4755 * * 52 166 3316 6883 2325 321 * * 6798 4116 0 E 53 6919 * 3315 3125 4843 3852 5986 4658 2210 5497 * 4355 3179 4317 4611 4745 4270 4662 * * 53 92 4022 * 2460 289 * 0 6794 3460 1000 K 54 4965 * * 5069 * 3890 5236 3630 2463 6875 * 4122 * 6850 1818 4410 4059 3459 5874 6842 54 150 3337 * 1716 524 0 * 6782 3848 1000 E 55 5558 * 5803 4334 3229 5511 5058 * 2599 6570 5925 4023 4719 4439 3804 2925 3565 4596 * 3541 55 111 3758 * 1496 632 * * 6786 3618 0 F 56 5398 6677 * 5329 3116 * 5110 3410 6447 1618 4535 5863 * 6041 5125 5179 5202 3532 5992 3253 56 76 4511 7051 2704 240 * * 6786 2576 0 P 57 * * 3403 3869 * 1423 6283 * 3876 * * 3654 3168 4682 4061 3620 6343 * * * 57 16 6545 * 1000 1000 * 0 6788 1000 1000 M 58 * 5181 3240 3023 * * 6554 5539 4011 2565 3810 3679 * 3727 4167 3965 3207 5816 * 6665 58 38 5271 * 2247 341 * 0 6788 2010 1000 L 59 4580 3410 * 6971 5513 * 6790 2918 * 2907 3267 * * * 6107 5767 5462 1546 * 4117 59 11 7095 * 2322 322 0 * 6781 1000 1000 V 60 * * * * 1511 * * 2726 * 2605 3708 * * * * 5430 5143 3357 * 3211 60 10 7133 * 2322 322 * * 6779 1000 0 V 61 * 6769 * * 5284 * * 1189 * 2047 6536 * * * * * * 1868 * * 61 0 * * * * * * 6789 0 0 R 62 * * * * * * 6003 6295 3492 * 6060 6685 3858 4898 447 6237 6819 * * * 62 0 * * * * * * 6789 0 0 G 63 5979 5248 * * * 147 * * * 6242 * * * * * 4599 * * * * 63 0 * * * * * * 6789 0 0 D 64 4653 5400 2664 2689 * 5076 * 6583 4767 * * 2454 6934 5391 4741 2200 3692 * * * 64 0 * * * * * * 6789 0 0 N 65 4404 * * 4639 * 5542 3742 * 5670 5659 4450 1795 * 3191 6032 2464 3399 6840 * 4899 65 0 * * * * * * 6789 0 0 V 66 * * * * * * * 781 * 5022 6356 * * * * * * 1414 * * 66 14 6726 * 0 * * * 6783 1000 0 L 67 4424 * 5180 * 6532 * 6786 3388 4016 2283 4123 * * 5379 2439 4032 4976 2439 * * 67 0 * * * * * * 6730 0 0 Y 68 * * 6554 6175 2233 * 4886 * 4241 2863 5321 * * * 6741 2799 3899 5712 6704 1916 68 0 * * * * * * 6631 0 0 V 69 * * * * 4765 * * 1063 * 4328 4361 * * * * * 6442 1416 * * 69 0 * * * * * * 6658 0 0 S 70 2387 * 5365 4723 * 4547 4787 4118 5535 * * * * 5987 3071 1956 2782 5171 * 5452 70 0 * * * * * * 6328 0 0 L 71 * * * * * * * 2447 * 879 4558 * * * * * * 2117 * * 71 0 * * 0 * * * 5953 0 0 //