HHsearch 1.5 NAME c5m4tA_ FAM FILE c5m4tA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5m4tA_.a3m DATE Sat Sep 23 08:21:13 2017 LENG 73 match states, 73 columns in multiple alignment FILT 39 out of 43 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.5244 1.6899 SEQ >ss_dssp CCCCSSHHHHHHHHHHHHTTTTCHHHHHHHGGGTEEEETTTTEEEECHHHHHHHHTTCSSSSCCCSSCSCCCC >sa_dssp EEEEEDEEDBEDCCEDADEBEDEEECADECDEDBADBCEEDECACBCEDDBEDECEEDDEEEDEDEEEEEEDE >ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCCCC >ss_conf 9864002344577886421136866520201037853566681310445667888766541266666533469 >Consensus xxqxxxxkxaxxxEkxCNxakdxqxxCxxlxxxgcxxnxxxKKCtLskexKxxxekanqetxgxdgkTnTTgs >c5m4tA_ GSKKQQTESAENKEKICNAAKDNQKACENLKEKGCVFNTESNKCELKKDVKEKLEKESKETEGKDEKANTTGS >UniRef50_A3R787(407-473:490) Variant surface glycoprotein n=2 Tax=Trypanosoma brucei RepID=A3R787_9TRYP E=3e-05 s/c=0.74 id=32% cov=93% ---QTQKKQAELAETECNAAKD-EDECKT--KTGCIYDKANKKCTLSEEGKQPAENTAAGNQAGTDGKNTAGS >UniRef50_Q04275(403-477:494) Surface antigen n=3 Tax=Trypanosoma equiperdum RepID=Q04275_TRYEQ E=1e-10 s/c=0.89 id=43% cov=96% ---KAGTKSAADKEKECNtKGQDKQDECEKLAKQGCAFNsevEKGKKCTLSDKAKDTSKEAANQ-PGNDGKtnTNTTGS >UniRef50_Q57X38(395-464:481) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q57X38_9TRYP E=1e-09 s/c=0.92 id=25% cov=97% -AQNKSETAKEAAEAKCNKI-DKDTECKTPCKWNAEAQDEAKKCTLSEKGQKTAEKANQEGKGA-KTTNTTGN >UniRef50_Q6QA68(376-455:472) Variable surface glycoprotein n=1 Tax=Trypanosoma evansi RepID=Q6QA68_9TRYP E=7e-09 s/c=0.77 id=39% cov=96% --KSEKEAAKRQSESKCNTEATQQTktvECSTLDKPeckpevGCKYNETSKACE--KDPKPAVSKTNQETGGADGKtnTNTTGS >UniRef50_Q4FKU5(390-459:475) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q4FKU5_9TRYP E=9e-07 s/c=0.78 id=46% cov=93% -AKGQGSVNQKTKETECNAAADDQKKCKELEGKGCTYDeakEKGKKCTLSDEAKQAAEKKAKETEGKDGKA----- >UniRef50_Q4GZE7(390-459:526) Variant surface glycoprotein (VSG), putative n=4 Tax=Trypanozoon RepID=Q4GZE7_9TRYP E=4e-05 s/c=0.71 id=41% cov=79% -----------DKNKECNKAKDDKEKCNELKEKGCVFNETGeanKKCQFNetKASKNGVPVTQTQTAGSTEAT----- >UniRef50_Q57TS0(402-469:534) Variant surface glycoprotein (VSG), putative n=1 Tax=Trypanosoma brucei RepID=Q57TS0_9TRYP E=8e-05 s/c=0.71 id=32% cov=90% --QQADTKTAEDQEKVCNAAGNDENKCKDLESQGCKYDENKpadQKCTLK----KEVKEKLEKEGKKDGATATT-- >UniRef50_P26332(393-458:476) Variant surface glycoprotein MITAT 1.2 n=2 Tax=Trypanosoma brucei brucei RepID=VSM2_TRYBB E=0.0007 s/c=0.69 id=32% cov=89% ----ESQQQAAETEGSCN--KKDQNECKSPCKW--HNDAENKKCTLDKEEAKKVADETAKD-GKTGNTNTTGS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 2016 * * * * 410 * * * * * * * * * * * * * * 1 0 * * * * * * 2020 0 0 S 2 1382 * * * * * * * * * * 3376 3216 * * 1279 * * * * 2 0 * * * * * * 2848 0 0 K 3 * * * 4025 * * * * 1504 * * * 3603 1222 3736 * * * * * 3 0 * * * * * * 3274 0 0 K 4 * * * * * 4346 * * 1510 * * 3339 * 1686 4021 3701 4277 * * * 4 0 * * * * * * 3427 0 0 Q 5 1961 * * 2949 * * * * 2603 * * 4389 5065 2064 * 4264 3640 * * * 5 0 * * * * * * 3587 0 0 Q 6 3816 * 2151 3491 * 3731 * * 2717 * * 4177 * 3720 4332 2798 3994 * * * 6 0 * * * * * * 3455 0 0 T 7 * * 3571 3085 * * * * 2833 * * * 3764 2292 * 3509 1776 * * * 7 0 * * * * * * 3455 0 0 E 8 2666 * * 3574 * * * 5044 1158 * * * * 2742 4508 * 4393 4683 * * 8 0 * * * * * * 3488 0 0 S 9 2685 * * * * 4309 * * 2770 * * 3736 * 3569 * 1574 2716 * * * 9 0 * * * * * * 3436 0 0 A 10 967 * * * * * * 4470 3208 * * * 5012 2711 * 4524 3749 4896 * * 10 0 * * * * * * 3324 0 0 E 11 3785 * 4653 1206 * * * * 2813 * * * * 3028 4018 4348 3672 * * * 11 0 * * * * * * 3280 0 0 N 12 4679 * 2178 1441 * 4613 * * * 4747 * 3595 4576 3828 5053 4627 5158 * * * 12 0 * * * * * * 3492 0 0 K 13 2204 * 4708 4923 * * * * 1249 * * * 4286 4230 * 3237 3638 * * * 13 0 * * * * * * 3516 0 0 E 14 * * 4961 229 * * * * 4955 * * 4373 * 4869 * * * * * * 14 0 * * * * * * 3440 0 0 K 15 2869 * 5170 3761 * 4464 * * 910 * * * * 5215 5065 3749 4237 * * * 15 0 * * * * * * 3440 0 0 I 16 5056 * * 1208 5596 * * 4359 2852 3784 * 4931 * * * 3774 * 2730 * * 16 0 * * * * * * 3440 0 0 C 17 * 46 * * * 5008 * * * * * * * * * * * * * * 17 0 * * * * * * 3409 0 0 N 18 * * * * * 5235 5299 * 5354 * * 156 * * * 5256 * * * * 18 172 4523 3864 0 * * * 3409 1291 0 A 19 1827 * 4788 2549 * * * * 1829 * * 4751 * * * * 2377 * * * 19 315 3431 3277 0 * 908 1098 3318 1502 1487 A 20 807 * * 4592 * 2791 * 2315 4591 * * * * * * * * * * * 20 216 * 2847 * * 0 * 3259 0 1970 K 21 3926 * * * * 1836 * * 973 * * 5252 * 4057 * * 4101 * * * 21 97 * 3946 * * 0 * 3362 0 1743 D 22 4802 * 600 3869 * 4178 * * 4373 * * 3934 * * * 5576 4437 * * * 22 33 * 5460 * * 1079 925 3362 0 1522 N 23 5159 * 1280 4175 * * * * 1662 * * 2955 * 4668 * 5594 * * * * 23 0 * * * * 0 * 3391 0 1587 Q 24 * * 3497 2210 * * * * 2695 * * * 4069 1055 * * * * * * 24 39 * 5234 * * * * 3409 0 0 K 25 * * 2773 2129 * 4530 * * 2525 * * 3174 4799 * * * 1936 * * * 25 57 4690 * 1585 585 0 * 3398 1000 1000 A 26 2404 * 3631 1245 * 5008 * * 2116 * * * * 5637 * * 5234 * * * 26 0 * * * * * * 3409 0 0 C 27 * 0 * * * * * * * * * * * * * * * * * * 27 0 * * * * * * 3409 0 0 E 28 * * 3091 1966 * 5021 * * 1470 * * 2893 * * * 4737 3994 * * * 28 164 * 3214 * * * * 3409 0 0 N 29 3891 * 3569 3330 * 5149 * * 1936 * * 3465 4114 * * 2760 2612 * * * 29 81 * 4203 * * * 0 3343 0 1918 L 30 * * * * * * * * * 495 * * 1994 * * * 4671 * * * 30 58 4671 * 1000 1000 624 1509 3326 1000 2178 K 31 3480 1926 4687 2580 * * * * 1285 * * * 5022 * * * * * * * 31 0 * * * * 0 * 3405 0 1548 E 32 5059 * 2103 2571 * 3786 * * 1364 * * * * * * 3887 4630 * * * 32 0 * * * * * * 3409 0 0 K 33 * * 6143 5860 * * * * 1430 * * * 3682 2447 * * 4255 5054 1978 * 33 125 4737 4457 2585 263 * * 3409 1000 0 G 34 * * 3390 5355 * 518 * * 5190 * * 2693 * * * * * * * * 34 0 * * * * * 0 3321 0 1000 C 35 3310 360 * * * * * * 4845 * * * 3549 * * * * * * * 35 0 * * * * 0 * 3321 0 1000 V 36 4523 * * 2264 * * 3541 3985 2875 * * * * * * 5235 2722 1813 * * 36 0 * * * * * * 3409 0 0 F 37 3379 * * 3157 1071 * * * * * * 4457 * * * * * * * 1888 37 0 * * * * * * 3409 0 0 N 38 * * 2050 * * * * * 2078 * * 1027 * 5012 * * * * * * 38 185 3058 * 1409 682 * * 3409 1817 0 T 39 4457 * 2100 1370 * * * * 2827 * * 6143 5354 6354 5429 5054 3483 * * * 39 108 3790 * 1585 585 * * 3409 1837 0 E 40 3554 * 2598 1582 * * * * 3021 * * 3378 4830 5631 * * 2828 * * * 40 45 5021 * 1585 585 * * 3409 1000 0 S 41 3870 * 5152 * * 1313 * * 2023 * * 3897 * * * 3158 3719 * * * 41 260 2600 * 1585 585 * * 3409 1809 0 N 42 * * * * * * * * 292 * * 4306 * 2915 * * * * * * 42 125 3590 * 1585 585 * * 3409 1618 0 K 43 3887 * * * * * * 5324 339 * * 5180 * * 3985 5256 * * * * 43 0 * * * * * * 3409 0 0 C 44 * 0 * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 3409 0 0 E 45 * * 5398 2053 * * * * 4300 * * * * 4443 * * 647 * * * 45 97 * 3948 * * * * 3466 0 0 L 46 * * * * 3855 * * * * 103 * * * * * * * * * * 46 0 * * * * * 0 3374 0 1163 K 47 * * 4429 * * * * 5418 1671 * * 3129 * * * 995 * * * * 47 110 4375 5299 1000 1000 0 * 3352 1000 1163 K 48 * * 4185 1159 * * * * 1008 * * * * * * * * * * * 48 0 * * * * * 0 3420 0 1000 D 49 3786 * 2000 845 * * * * 3335 * * 5523 * * * * * * * * 49 0 * * * * * 0 3422 0 1000 V 50 1815 * * 4461 * 1674 * * * * * * 3909 * 5455 4274 * 2211 * * 50 70 4399 * 0 * * 0 3422 1401 1000 K 51 4461 * * 4126 * * * * 258 * * 5232 * 4868 * * * * * * 51 49 4917 * 1000 1000 0 * 3422 1000 1000 E 52 4286 * 5002 2279 * * * * 2145 * * 4290 3566 1904 5395 5017 5158 * * * 52 0 * * * * * * 3441 0 0 K 53 1778 * 4985 2444 * 4290 * * 1867 * * * 4177 4404 * * 3937 * * * 53 89 5267 4895 0 * * * 3441 1000 0 L 54 1789 * * * * * * 5307 * 1794 * * * * 3956 4984 * 1733 * * 54 44 5043 * 1000 1000 0 * 3420 1000 1000 E 55 4490 * * 620 * * * * 2873 * * * 4290 5034 * 3931 5568 * * * 55 45 * 5017 * * * * 3441 0 0 K 56 4842 * 4462 3230 * * * * 524 * * 4951 * 4950 * * * 4241 * * 56 32 5532 * 0 * * 0 3417 1000 1000 E 57 1043 * * 2335 * * * * 4411 * * * * * * 5225 2263 4860 * * 57 0 * * * * 0 * 3417 0 1000 S 58 2761 * * 3721 * 4265 * * * 5379 * 1051 * 4290 * 3408 3786 * * * 58 0 * * * * * * 3441 0 0 K 59 3201 * 5017 4197 * * * * 4059 * * 3993 * 777 * 5609 3660 * * * 59 28 * 5716 * * * * 3441 0 0 E 60 * 5015 * 816 * 4758 * * 2947 * * 4860 * 2799 * 5143 5157 * * * 60 97 * 3938 * * * 0 3440 0 1000 T 61 4130 * 3313 3396 * 4710 * 5011 4892 * * 4701 * 3779 * * 993 5030 * * 61 104 * 3843 * * 1522 618 3408 0 1930 E 62 2894 * * 1761 * 1241 * * 4710 * * * 4931 4588 * * * * 4840 * 62 0 * * * * 996 1004 3357 0 2036 G 63 4640 * * 4713 * 408 * * 3230 * * 5100 * * * * * * 4942 * 63 0 * * * * 0 * 3455 0 1422 K 64 3197 * 4052 * * 4615 * * 1131 * * 2245 * * * 4097 4738 5238 * * 64 55 * 4743 * * * * 3435 0 0 D 65 * * 540 3377 * 5056 * * * * * * * * * 4921 2711 * * * 65 41 5154 * 1585 585 0 * 3410 1000 1000 E 66 * * 3910 3615 * 658 * * 2463 * * * * * * 4759 * * * * 66 0 * * * * * * 3435 0 0 K 67 3200 * * 5237 * 4575 * * 715 * * 4298 * * * * 2621 * * * 67 475 1835 * 503 1765 * * 3420 2184 0 A 68 2473 * * * * * * * 4252 * * * * * * * 382 * * * 68 0 * * * * * * 3302 0 0 N 69 3908 * 4931 * * * * * * * * 448 * * 4476 3697 4452 * * * 69 0 * * * * * * 3166 0 0 T 70 * * * * * * * * * * * 3633 * * * 3883 232 * * * 70 0 * * * * * * 3095 0 0 T 71 3865 * * * * * * * * * * * * * * * 103 * * * 71 0 * * * * * * 3073 0 0 G 72 2737 * * 4404 * 420 * * * * * * * * * * * * 4180 * 72 0 * * * * * * 2929 0 0 S 73 3894 * * * * * * * * * * 3861 * * * 211 * * * * 73 0 * * 0 * * * 2911 0 0 //