HHsearch 1.5 NAME c5ldwR_ FAM FILE c5ldwR_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ldwR_.a3m DATE Thu Feb 9 20:07:20 2017 LENG 89 match states, 89 columns in multiple alignment FILT 42 out of 46 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.4453 0.1763 SEQ >ss_dssp CEETTEECCSSCCCCSSSSSCCSTTTSCCCCCTTCSCHHHHHSCCEECCSSEEEECSSTTTSCCCCEEEECCCSSSCEECSSCCCEEEC >sa_dssp EDDEDCDDCDEDECCDEDDDCDDDDEDEDEDDEDCDDDDCDDCDCCDBEDDCCCBDEDDEEEEBDEDECDCEDEEDCCDBEECDDDCEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCC >ss_conf 96422221111111111111111111111111111111111111111233334568987478787589986799987756887803459 >Consensus xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCDGGGGALGHPRVYINLDKpGxxvxCGYCGrRFxQ >c5ldwR_ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQ >UniRef50_Q3IZ23(31-63:72) Putative uncharacterized protein n=16 Tax=Rhodobacterales RepID=Q3IZ23_RHOS4 E=5e-09 s/c=1.88 id=53% cov=38% ------------------------------------------------------CDGGEGALGHPRVWLSIPHETGFVECGYCDRRY-- >UniRef50_A3LTY2(83-118:129) NADH-ubiquinone oxidoreductase (Fragment) n=1 Tax=Pichia stipitis RepID=A3LTY2_PICST E=5e-08 s/c=1.64 id=57% cov=39% ------------------------------------------------------CDGNRGSTlqGHPKVFINLD-QPKAHTCGYCGLRYAK >UniRef50_C5SJZ5(21-52:72) Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SJZ5_9CAUL E=9e-06 s/c=1.61 id=55% cov=37% ------------------------------------------------------CNGGGGALGHPMVYLELGANGE-VECGYCDRKF-- >UniRef50_A5V7L6(20-57:68) Putative uncharacterized protein n=7 Tax=Alphaproteobacteria RepID=A5V7L6_SPHWW E=4e-09 s/c=1.64 id=56% cov=38% ------------------------------------------------------CDGasdipGGEALGHPRVFIEIDPDIGHADCGYCDRRF-- >UniRef50_D0NKQ6(129-164:173) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NKQ6_PHYIN E=8e-09 s/c=1.71 id=60% cov=39% ------------------------------------------------------CDGGGGALGHPVEYIQLDtrKHNIPQTCKYCGVRYK- >UniRef50_A4U047(29-60:72) Protein conserved in bacteria n=2 Tax=Alphaproteobacteria RepID=A4U047_9PROT E=4e-07 s/c=1.75 id=45% cov=37% ------------------------------------------------------CDGGNAGLGHPRVYLNMGHD-RQVVCPYCSRTY-- >UniRef50_B5YNI4(20-55:61) Predicted protein (Fragment) n=3 Tax=Eukaryota RepID=B5YNI4_THAPS E=3e-09 s/c=1.74 id=56% cov=40% ------------------------------------------------------CDGGGGALGHPLEYIKVGyRDGKPVSCVYCGLKYKQ >UniRef50_A8GY88(25-58:63) Putative uncharacterized protein n=13 Tax=Rickettsia RepID=A8GY88_RICB8 E=7e-08 s/c=1.72 id=46% cov=39% ------------------------------------------------------CCGKEPPYDHPRVYLEIDKEKKEVSCLYCSKKFR- >UniRef50_Q6C8J9(97-134:136) YALI0D19030p n=1 Tax=Yarrowia lipolytica RepID=Q6C8J9_YARLI E=1e-07 s/c=1.51 id=46% cov=39% ------------------------------------------------------CDGanhnGPGAQGHPKIFINVDAPGSHA-CQYCGTRYEK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 X 2 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 2 * * * * * * * 0 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 0 0 0 X 4 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 4 * * * * * * * 0 0 0 X 5 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 5 * * * * * * * 0 0 0 X 6 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 6 * * * * * * * 0 0 0 X 7 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 7 * * * * * * * 0 0 0 X 8 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 8 * * * * * * * 0 0 0 X 9 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 9 * * * * * * * 0 0 0 X 10 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 10 * * * * * * * 0 0 0 X 11 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 11 * * * * * * * 0 0 0 X 12 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 12 * * * * * * * 0 0 0 X 13 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 13 * * * * * * * 0 0 0 X 14 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 14 * * * * * * * 0 0 0 X 15 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 15 * * * * * * * 0 0 0 X 16 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 16 * * * * * * * 0 0 0 X 17 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 17 * * * * * * * 0 0 0 X 18 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 18 * * * * * * * 0 0 0 X 19 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 19 * * * * * * * 0 0 0 X 20 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 20 * * * * * * * 0 0 0 X 21 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 21 * * * * * * * 0 0 0 X 22 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 22 * * * * * * * 0 0 0 X 23 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 23 * * * * * * * 0 0 0 X 24 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 24 * * * * * * * 0 0 0 X 25 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 25 * * * * * * * 0 0 0 X 26 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 26 * * * * * * * 0 0 0 X 27 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 27 * * * * * * * 0 0 0 X 28 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 28 * * * * * * * 0 0 0 X 29 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 29 * * * * * * * 0 0 0 X 30 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 30 * * * * * * * 0 0 0 X 31 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 31 * * * * * * * 0 0 0 X 32 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 32 * * * * * * * 0 0 0 X 33 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 33 * * * * * * * 0 0 0 X 34 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 34 * * * * * * * 0 0 0 X 35 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 35 * * * * * * * 0 0 0 X 36 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 36 * * * * * * * 0 0 0 X 37 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 37 * * * * * * * 0 0 0 X 38 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 38 * * * * * * * 0 0 0 X 39 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 39 * * * * * * * 0 0 0 X 40 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 40 * * * * * * * 0 0 0 X 41 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 41 * * * * * * * 0 0 0 X 42 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 42 * * * * * * * 0 0 0 X 43 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 43 * * * * * * * 0 0 0 X 44 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 44 * * * * * * * 0 0 0 X 45 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 45 * * * * * * * 0 0 0 X 46 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 46 * * * * * * * 0 0 0 X 47 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 47 * * * * * * * 0 0 0 X 48 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 48 * * * * * * * 0 0 0 X 49 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 49 * * * * * * * 0 0 0 X 50 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 50 * * * * * * * 0 0 0 X 51 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 51 * * * * * * * 0 0 0 X 52 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 52 * * * * * * * 0 0 0 X 53 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 53 * * * * * * * 0 0 0 X 54 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 54 * * * * * * * 0 0 0 C 55 * 0 * * * * * * * * * * * * * * * * * * 55 0 * * * * * * 2757 0 0 D 56 * 4031 184 * * * * * * * * 4101 * * * * * * * * 56 0 * * * * * * 2757 0 0 G 57 * * * * * 0 * * * * * * * * * * * * * * 57 113 3728 * 2195 355 * * 2757 1510 0 G 58 * * * * * 346 * * 4031 * * 3933 4689 * * * * 4385 * * 58 23 5976 * 0 * * * 2757 1000 0 G 59 * * 4358 3152 * 753 5608 * * 4958 * 3760 5016 * 4459 5709 5428 * * * 59 29 5661 * 2322 322 * * 2757 1000 0 G 60 3643 * 5428 5334 * 398 * * * * * * 3144 * * * * * * * 60 34 5428 * 0 * * * 2757 1000 0 A 61 720 * * * * 3808 * * * * * * 1857 * * 4459 * * * * 61 0 * * * * * * 2757 0 0 L 62 5372 * * 5405 * * * * * 367 * * * 4296 * * 3953 * * 4031 62 67 4459 * 1000 1000 * * 2757 1061 0 G 63 * * 4031 * * 91 * * * * * * * * * * * * * * 63 0 * * * * * * 2757 0 0 H 64 * * * * * * 0 * * * * * * * * * * * * * 64 0 * * * * * * 2757 0 0 P 65 * * * * * * * * * * * * 0 * * * * * * * 65 0 * * * * * * 2757 0 0 R 66 * * * * * * * * 1373 3354 5093 * * * 1154 * * 4747 * * 66 0 * * * * * * 2757 0 0 V 67 * * * 3257 * * * 2585 * * * * * * * * * 457 * * 67 0 * * * * * * 2757 0 0 Y 68 * * * * 1864 * * * * * * * * * * * * * 2411 896 68 0 * * * * * * 2757 0 0 I 69 * * * * * * * 800 * 1610 5039 * * * * * * * * 3883 69 0 * * * * * * 2757 0 0 N 70 * * 5039 2239 * * * * 4178 * 5426 1067 * 4747 4063 3923 4689 * * * 70 0 * * * * * * 2757 0 0 L 71 * * * * * * * 1829 * 1189 2838 * * * * * 3651 4050 * * 71 65 5764 5279 2322 322 * * 2757 1000 0 D 72 3067 * 723 * * 2024 * * * * * * 5113 * * * * * * * 72 343 3846 2817 629 1501 * 0 2749 1301 1000 K 73 3000 * 4576 4027 * * 3727 * 1292 * * * 3654 3551 3703 * 4434 * * * 73 71 * 4382 * * 258 2609 2703 0 2079 E 74 3924 * 2465 2472 * * 3356 * * * * 5047 1471 3973 * 5618 * * * * 74 280 * 2505 * * 0 * 2724 0 1592 T 75 5209 * 4940 4803 * 1003 * 5158 3893 * * 3883 3043 4779 * * 3563 * * * 75 398 * 2051 * * 0 * 2682 0 1943 K 76 * * 3736 2653 * 2769 * 4543 2225 * * 4092 5311 4934 3785 4080 3129 * * * 76 51 * 4844 * * 0 * 2753 0 1863 T 77 3373 * * 3502 2307 * 3320 3623 5669 * * 5950 2514 4913 5158 * 5591 4072 * 3651 77 78 * 4255 * * 0 * 2753 0 1000 G 78 2264 * * 4649 * 4590 2742 4263 4864 * * * * 4687 5777 * 5348 1347 * * 78 115 * 3704 * * 956 1046 2726 0 1445 T 79 3061 * 3651 2194 * * * * * * 4915 * 3062 * * 2805 2417 4111 * 4608 79 0 * * * * 0 * 2712 0 1652 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * * * * * 2757 0 0 G 81 * * * * * 931 * * 3244 3621 * 5361 2504 4945 * 5295 * 5056 * * 81 0 * * * * * * 2754 0 0 Y 82 * * * * * * * * * * * * * * * * * * * 0 82 0 * * * * * * 2754 0 0 C 83 * 0 * * * * * * * * * * * * * * * * * * 83 0 * * * * * * 2754 0 0 G 84 4691 * 1858 * * 990 * * * * * * * * * 2457 * * * * 84 0 * * * * * * 2754 0 0 L 85 * * * * * * * 3803 3513 1513 * 5569 * 4634 1482 * 4924 4711 * * 85 0 * * * * * * 2729 0 0 Q 86 * * * * * * 5200 * 2752 4745 * * 3611 5465 719 * 4809 4658 * * 86 0 * * * * * * 2729 0 0 F 87 * * * * 513 * * * * * * * * * * * * * * 1741 87 0 * * * * * * 2729 0 0 R 88 2783 * * 1824 4369 * * * 2470 * * * * 4345 2251 * 3568 * * * 88 0 * * * * * * 2373 0 0 Q 89 * * * * * * * * 1147 * * * * 866 * * * * * * 89 0 * * 0 * * * 2048 0 0 //