HHsearch 1.5 NAME c5ldwK_ FAM FILE c5ldwK_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5ldwK_.a3m DATE Thu Feb 9 20:24:43 2017 LENG 95 match states, 95 columns in multiple alignment FILT 106 out of 154 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.5144 1.7046 SEQ >ss_dssp CCSHHHHHHHHHHHHHHHHCCSSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCSSGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSSCCCCC >sa_dssp EEECEECDEDCDEBDECCEEDEDECDDBBECDECCCEBDDDCCCCDCEEEEEEECDEDBEDDEEECDDECDEDDDEBEECDEEDEECDCEDEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC >ss_conf 90489999999999999999747999999999999999999999999950242159999999999999898999999999994150457641079 >Consensus smxxxxxxxxFxxglxxxxxxrkhlLxxLLsLExmmLslxxxxxxxxxxxxxxxxxxxxlxxLtxxaCEaalGLsllVxxxRxxGnDxxxslnlL >c5ldwK_ SMVYMNIMMAFTVSLVGLLMYRSHLMSSLLCLEGMMLSLFVMAALTILNSHFTLASMMPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLL >UniRef50_Q0ZFV9(15-94:97) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Nautilus macromphalus RepID=Q0ZFV9_NAUMA E=5e-05 s/c=0.61 id=32% cov=85% ----------YIFGVFVVVMSFKHILNVLLGFEVMMISVYCGFCLLVGSGEVCLVG----VLLAFSGCGASLGVGLLVSCIRGHGNDYVSGLSL- >UniRef50_C1KGX3(8-99:101) NADH-ubiquinone oxidoreductase chain 4L n=8 Tax=Heterotremata/Thoracotremata group RepID=C1KGX3_9EUCA E=8e-11 s/c=0.74 id=32% cov=98% -MMIFIPMVMIFCGMWGFITYNKHMLNSLLSLEFMMLGVFWLM--SSQLTLVGSEIYFSLFFLTLAACEGALGLTMLILVVRSHGNDVFSSFNLL >UniRef50_C4NCG4(7-94:95) NADH dehydrogenase subunit 4L n=1 Tax=Schlettererius cinctipes RepID=C4NCG4_9HYME E=8e-05 s/c=0.55 id=28% cov=91% -------LFMFICSLMIMFTVYEHFLMMLVGIEFLMLSLTYEFFIYL--NLIDLSMYLMIYYFIIMVCESVLGLSILVIMVRFNGDDYIKLISL- >UniRef50_Q5YA36(2-93:97) NADH-ubiquinone oxidoreductase chain 4L n=3 Tax=Annelida/Echiura/Pogonophora group RepID=Q5YA36_URECA E=4e-07 s/c=0.61 id=33% cov=98% TSPLFLFSISGLICLFVLSLQRKHLLMSLLTLEAFILSMAILIPMSIMFQNQVNG-MFAIVLLTMGACEASLGLSLLVLMTRSYGNDLLKSIT-- >UniRef50_Q2K3V1(9-98:100) NADH-quinone oxidoreductase subunit K 2 n=12 Tax=Bacteria RepID=NUOK2_RHIEC E=3e-06 s/c=0.59 id=19% cov=93% -------VVLFVIGAAGVLIRR-NILVVLMSLELLLNSVNINFIAFGHYYDDFRGQIFAIFVIAITAAEVAVALGILVALVRNKSTLKVDDVTMM >UniRef50_B4XEP0(1-89:91) NADH dehydrogenase subunit 4L n=1 Tax=Polistes sp. MD1 RepID=B4XEP0_9HYME E=8e-06 s/c=0.58 id=26% cov=95% -MINFFLLILFFMNLMMIFKFYKHLLMFLLSMEY-----YVLIILLIIYFNMYMMDYYLLIFMVMFVIEGVIGISFMVMMIRFFGNDMMKNLMLI >UniRef50_Q6UVR5(8-102:104) NADH dehydrogenase subunit 4L n=1 Tax=Pseudendoclonium akinetum RepID=Q6UVR5_PSEAK E=0.0002 s/c=0.49 id=26% cov=101% SLLVLTSFLVFWIGLTGIFFNRRLVISILLAVELTLLSINLVFLTFAAYLDDILGVLMALYILCVAAAESAIGLALIIIFYRARRTISVEYISLL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 778 1262 * * * 1 0 * * * * * * 3511 0 0 M 2 * * * * * * * * * 1782 985 * 4700 * * 4663 3485 * * 4765 2 0 * * * * * * 4394 0 0 V 3 5254 * * * 5255 * * 2331 * 1903 1726 * 2696 * * * * 5326 * * 3 0 * * * * * * 4884 0 0 Y 4 * * * * 2352 4918 3124 5276 5004 3348 * 3450 * * * * 4229 4530 * 1676 4 0 * * * * * * 4942 0 0 M 5 * * * * 1326 * * 4370 5681 2008 2928 * * * * * 5358 3549 5120 6095 5 0 * * * * * * 4911 0 0 N 6 5398 * * * 3751 4894 * 4348 * 2853 5966 3745 * * * 3147 1876 2701 * 4293 6 28 5709 * 1000 1000 * * 5037 1000 0 I 7 5004 6609 * * 2001 4769 * 3238 * 2387 5052 * 3877 * * 3096 4805 3195 * 6085 7 0 * * * * * * 5142 0 0 M 8 5670 4406 * * 2321 * * 2457 * 2413 2971 4418 * * * 4833 5122 4016 * 3982 8 0 * * * * * * 5353 0 0 M 9 4817 5642 * * 2667 6670 * 2272 * 2599 2709 * * * * 4078 3164 3805 * 6662 9 0 * * * * * * 5350 0 0 A 10 4458 * * * 4198 5189 * 3669 * 1683 1977 * * * * 3825 3879 3473 * * 10 19 6227 * 0 * * * 5454 1000 0 F 11 * * * * 550 6604 * 4162 * 4079 5597 * 6398 * * * * 3404 * 3950 11 14 6740 * 1000 1000 * * 5477 1000 0 T 12 4105 3918 * * 2169 4728 * 2626 * 2484 3081 * * * * 4821 6027 4659 4650 5228 12 41 * 5170 * * * * 5466 0 0 V 13 5598 3575 * * 3870 4371 * 2171 * 2366 3229 * * * * 2857 6329 3244 * * 13 10 * 7198 * * 0 * 5432 0 1974 S 14 3286 4732 * * * 746 * 6314 * 6368 5537 5336 * * * 2612 5101 * * * 14 0 * * * * 0 * 5389 0 1000 L 15 4216 5323 * * 5793 5768 * 2660 * 1286 3631 * * * * 4822 5585 2668 6244 6802 15 0 * * * * * * 5384 0 0 V 16 5835 * * * 3196 6930 * 2834 * 2105 3291 * * * * 4088 3690 2835 4580 3794 16 0 * * * * * * 5384 0 0 G 17 4815 5093 * * 6332 1128 * 5172 6968 * 4826 4904 * * * 2310 4231 3238 * * 17 36 * 5329 * * * * 5384 0 0 L 18 5594 * * * 1516 * * 3473 * 1570 5140 * * * * * 6743 3088 * 4398 18 15 * 6553 * * 0 * 5384 0 1568 L 19 3906 3585 * * 3355 5606 * 2754 * 2759 3624 * * * * 3213 5193 2188 * * 19 0 * * * * 0 * 5414 0 1000 M 20 4342 * * * 2799 * * 2918 6084 2361 3261 * * * * 2514 3719 4378 6625 4272 20 14 * 6686 * * * * 5385 0 0 Y 21 * * * 6876 3413 * 4523 * 3545 7224 5154 1736 * 2640 2639 4651 * 6208 6527 4370 21 10 7165 * 1585 585 0 * 5411 1000 1000 R 22 6577 * * * 4811 * 5416 6195 4813 * 5880 5679 * 3665 641 6811 * * 5271 3472 22 87 * 4101 * * * * 5378 0 0 S 23 6662 * 4980 6222 6079 5840 6154 7047 1175 5316 5689 3325 5590 4335 3629 4130 3989 7171 * 5276 23 33 * 5466 * * 0 * 5369 0 2334 H 24 6408 * * * 6282 * 528 * 6666 5318 * 2618 5795 * * 5155 * * * 4725 24 0 * * * * 0 * 5403 0 1474 L 25 6329 * * * 3828 * * 1790 * 964 4158 * * * * * 5950 4537 * * 25 0 * * * * * * 5376 0 0 M 26 * * * * 5024 * * 2836 * 542 3144 * * * * * * 5099 * * 26 17 * 6451 * * * * 5376 0 0 S 27 5551 * * * 5571 5272 * 3562 * 2860 2188 3743 * * * 2014 3748 3840 * 5427 27 0 * * * * 0 * 5404 0 1000 S 28 3225 * * * 6083 5596 * 2351 * 3336 2258 * * * * 3825 3801 2311 * 6688 28 0 * * * * * * 5376 0 0 L 29 * * * * 4091 * * 5429 * 152 5764 * * * * * * * * * 29 19 * 6221 * * * * 5376 0 0 L 30 * * * * 5177 * * 3040 * 656 2559 * * * * * * 4425 * * 30 0 * * * * 0 * 5405 0 1000 C 31 3951 1993 * * * 4521 * * * 5655 6420 * * * * 824 5749 * 6090 6514 31 0 * * * * * * 5376 0 0 L 32 4792 * * * 4826 * * 2866 * 654 3968 * * * * 6221 5521 4138 * * 32 0 * * * * * * 5376 0 0 E 33 * * * 0 * * * * * * * * * * * * * * * * 33 0 * * * * * * 5376 0 0 G 34 2851 5983 * * 2217 3077 * 3926 * 2861 3133 * * * * 4452 5097 4413 * 3783 34 37 * 5285 * * * * 5376 0 0 M 35 4905 5402 * * 4818 * * 2966 * 3000 952 * * * * 6244 5412 3308 * * 35 14 * 6682 * * * 0 5350 0 1688 M 36 4140 * * * 6698 * * 4419 * 2018 1382 6490 * * * 4723 4372 3021 * 4807 36 0 * * * * * 0 5345 0 1997 L 37 * * * * * * 6200 4920 * 540 4355 3191 * 5951 * 6562 * 3634 * * 37 35 * 5391 * * 587 1580 5345 0 1997 S 38 2649 6115 * * * 2218 * 4571 * 6490 3953 4960 * * * 1232 5326 6560 * * 38 16 6543 * 0 * 1543 607 5336 1000 2044 L 39 5145 5610 * * 7219 * * 3092 * 1280 4511 * * 6087 * 4626 4984 1811 * * 39 84 * 4140 * * 0 * 5340 0 1622 F 40 5590 * * * 1320 * * 4948 * 4350 3701 2761 * * * 4311 4960 5621 * 2557 40 66 * 4482 * * 546 1666 5364 0 2664 V 41 * 5006 5715 * 2516 6150 6242 2503 * 2216 4119 * * * * 5794 5212 2351 4861 5434 41 20 * 6179 * * 1286 761 5462 0 2733 M 42 4185 * * 6167 3952 3766 * 5427 * 1949 2154 3005 * * * 4182 4431 4648 6417 6895 42 27 * 5750 * * 327 2300 5369 0 2469 A 43 6013 * * * 2041 * * 2464 * 1778 2367 * * * * * 5717 5710 6904 5138 43 77 * 4258 * * 1548 604 5362 0 1991 A 44 3226 4688 * * 3138 4597 * 2362 * 3286 4522 * 6812 * * 3875 3512 2577 * 5239 44 49 6205 5670 1585 585 1870 461 5407 1000 2965 L 45 3188 6335 * * 3107 4640 * 2659 6512 1926 3646 6381 7002 6788 * 3922 4594 4184 * 5780 45 28 * 5707 * * 947 1055 5390 0 2981 T 46 4996 5171 * 6290 1866 * * 3796 * 4201 6099 4809 6263 * * 2688 3299 4799 4081 3154 46 11 * 6992 * * 1070 933 5380 0 2651 I 47 3533 3920 5549 * 4936 4133 6570 4130 6625 2170 5439 5474 4118 6741 * 2277 4059 4450 * 6383 47 85 6591 4426 2322 322 967 1034 5357 1000 2293 L 48 4223 4726 * * 4589 4234 5476 4065 6613 2147 2957 5863 * 5569 5088 2938 4874 3479 * 4472 48 41 * 5175 * * 1763 504 5399 0 2797 N 49 5185 6696 5778 5710 2675 4482 4442 4775 6365 3156 4018 3750 * 5904 6558 2933 5540 4494 6396 2782 49 64 * 4533 * * 761 1286 5426 0 2864 S 50 4784 6168 * 6528 3734 3390 4226 4934 6143 2518 3537 4044 6529 4879 * 2999 3082 5975 6519 4972 50 52 6518 5355 1000 1000 2190 357 5428 1000 2786 H 51 5465 * 3349 3958 4656 2689 5986 4721 6481 3432 3648 2489 4759 5531 5416 4764 4150 5579 * 6852 51 37 * 5320 * * 366 2158 5396 0 2979 F 52 5664 6927 2923 * 3340 6651 5284 3972 6106 3837 3728 2863 4791 4284 6670 3134 4375 4196 * 5021 52 42 * 5124 * * 2137 372 5388 0 2219 T 53 5937 6063 3866 4888 4725 2994 5223 4133 * 3054 5463 3734 5238 * * 3159 3103 4652 5334 3615 53 41 * 5146 * * 1304 749 5448 0 2370 L 54 4268 6495 4148 6563 5482 3277 * 5400 6436 2266 3948 3958 6689 6602 6595 2717 2900 4986 6546 6192 54 129 6374 3761 1000 1000 735 1325 5480 1000 2764 A 55 5011 4851 4305 2448 4349 1973 * 4321 * 4786 5870 4340 4733 5703 * 3175 4976 4796 6855 * 55 49 * 4918 * * 3246 161 5405 0 3441 S 56 3923 4983 5189 * 5635 4243 6382 3753 7028 4102 3250 5066 5594 2530 * 2655 3935 4678 * 4104 56 74 * 4325 * * 569 1617 5388 0 3684 M 57 3836 6169 * 6877 3264 * 6878 3201 * 4165 2945 * 4662 7336 * 3441 6885 4312 6591 1768 57 0 * * * * 2039 402 5334 0 3165 M 58 5482 * * * 1976 * * 3506 * 1911 2562 5433 * * * 5799 4156 4236 * 4327 58 0 * * * * 570 1616 5346 0 2893 P 59 3154 5398 * * 4253 5531 * 3365 * 2610 5589 6256 2968 * * 2040 4243 4049 * 6518 59 20 * 6175 * * 1000 1000 5346 0 1587 I 60 * * * * 3608 * * 2063 * 1025 3758 * * * * * * 3571 * 5104 60 0 * * * * 1490 635 5374 0 1990 I 61 * * * * 2235 * * 1723 * 3647 4378 * 6925 * * * 4615 2501 * 2931 61 0 * * * * 0 * 5380 0 1482 L 62 * * * * 1722 * * 2635 * 2409 3588 * * * * 6742 6451 2756 * 3388 62 15 * 6581 * * * * 5376 0 0 L 63 * * * * 5143 * * 2820 * 463 3567 * * * * * 5619 * * * 63 0 * * * * * 0 5374 0 1000 V 64 2884 5121 * * * 5417 * 3515 * 6330 * * 5700 * * 3470 1168 2663 * * 64 0 * * * * 0 * 5374 0 1000 F 65 5383 * * * 1663 * * 2793 * 2175 2985 * * * * 6288 * 2791 * 6520 65 0 * * * * * * 5376 0 0 A 66 1505 5870 * * 6083 3185 * 5406 * 6834 4503 6756 * * * 1812 4903 3295 * * 66 0 * * * * * * 5376 0 0 A 67 815 * * * * 4915 * 5351 * * * * * * * 6719 * 1457 * * 67 0 * * * * * * 5376 0 0 C 68 3100 377 * * * 6270 * 5394 * * * * 5786 * * 4091 * * * * 68 0 * * * * * * 5376 0 0 E 69 * * * 86 * 4112 * * * * * * * * * * * * * * 69 0 * * * * * * 5376 0 0 A 70 1009 5884 * * * 2007 * 5389 * * 6612 * * * * 3252 5024 3886 * * 70 0 * * * * * * 5376 0 0 A 71 1311 5766 * * * 3181 * * * * * * * * * 1727 5512 2793 * * 71 0 * * * * * * 5376 0 0 L 72 4956 * * * 5441 * * 2164 * 1044 5005 * * * * 7053 4544 2688 * * 72 0 * * * * * * 5376 0 0 G 73 4353 * * * * 129 * * * * * * * * * 4760 * * * * 73 0 * * * * * * 5376 0 0 L 74 * * * * 5884 * * 5115 * 127 5987 * * * * * * 5472 * * 74 0 * * * * * * 5376 0 0 S 75 1751 * * * * 2866 * 5884 * * * * * * * 1056 4496 5411 * * 75 0 * * * * * * 5376 0 0 L 76 * 5052 * * 4980 * * 1789 * 956 4292 * * * * * * 3604 * * 76 0 * * * * * * 5376 0 0 L 77 * 5621 * * * * * 3315 * 713 3276 4834 * * * * * 2934 * * 77 0 * * * * * * 5376 0 0 V 78 5644 * * * * * * 3201 * 3609 * * * * * 4834 4907 472 * * 78 0 * * * * * * 5376 0 0 M 79 2111 4902 5786 * 5514 5338 * 3884 7352 3494 3267 4425 * 4909 * 2060 4565 5317 5884 * 79 0 * * * * * * 5376 0 0 V 80 6943 6268 * * 3434 * 5786 2683 * 2021 2037 * * * * 5186 3720 4047 6366 4423 80 0 * * * * * * 5376 0 0 S 81 3763 * * * 4304 * 5328 2631 6306 5693 7076 6533 * * * 2930 3071 2037 * 2782 81 20 6207 * 0 * * * 5376 1000 0 N 82 * 6918 * * 4833 * 5611 * 4875 * * 5942 * 4767 315 7005 5799 * * 5667 82 0 * * * * * * 5408 0 0 T 83 4162 * 6988 * 3044 4262 * 5855 4857 4037 4751 4386 * 5197 5288 1973 2254 4756 * 6514 83 0 * * * * * * 5434 0 0 Y 84 * 5824 6372 7066 4197 * 1507 * 4465 6890 * 4534 * 5306 2868 4348 5213 6589 * 2246 84 0 * * * * * * 5434 0 0 G 85 4436 * * 6452 * 336 * * * * * 4492 * 5534 5486 4226 6862 * * * 85 0 * * * * * * 5429 0 0 T 86 4711 * 4970 5553 6319 5489 * * 5911 6145 * 1141 * * * 2123 2711 7105 * * 86 0 * * * * * * 5412 0 0 D 87 5500 * 467 4037 * * 6382 4382 * 4500 * 5190 * * * 6900 4669 6114 * * 87 0 * * * * * * 5406 0 0 Y 88 5629 6437 4227 * 3613 * 4587 * 3921 2291 3074 4089 * 5869 6811 3847 * 6814 * 2064 88 0 * * * * * * 5386 0 0 V 89 * 5597 * * 2583 * * 3279 * 1937 3539 * 6403 * * * 5462 1674 * 6120 89 0 * * * * * * 5386 0 0 Q 90 * * 3605 3931 4536 5244 5942 * 2571 4951 4017 3483 * 4136 6305 1863 4172 * * 6078 90 0 * * * * * * 5383 0 0 N 91 3581 * 4645 * * 4390 * 4658 * 4206 5611 2390 * * 5977 1399 3248 6920 * 6047 91 0 * * * * * * 5345 0 0 L 92 * * * * 2751 * * 3108 5282 1245 2528 * * * * 4160 5837 4602 * * 92 0 * * * * * * 5322 0 0 N 93 * 6449 * * 5286 6055 * 6167 6132 * 5710 1020 * * * 2112 2628 6133 * * 93 0 * * * * * * 5263 0 0 L 94 * * * * 4712 * * 3452 5791 924 2685 * * * * 6240 3220 4834 6142 * 94 0 * * * * * * 5230 0 0 L 95 * * * * * * * 3403 * 378 2878 * * * * * * * * * 95 0 * * 0 * * * 5128 0 0 //