HHsearch 1.5
NAME  c5jnbG_
FAM   
FILE  c5jnbG_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c5jnbG_.a3m 
DATE  Sat Jun 25 08:18:32 2016
LENG  28 match states, 28 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.4949  3.6829 
SEQ
>ss_dssp
CCSCCCCCHHHHHHHTTHHHHHHTTSCC
>sa_dssp
EEECEEEEEDDECCEEEDEEEECEEEEE
>ss_pred
CCCCHHHHHHHHHHHHHHHHHHHHCCCC
>ss_conf
9741334663777687899998532799
>Consensus
idfxfxxxxegakrfdnlanlxrxstpt
>c5jnbG_
IDFRFDDYVEGAKRFDNLANLIRSSTPT
>UniRef50_A8WZ93(200-225:644) C. briggsae CBR-RNP-8.2 protein n=2 Tax=root RepID=A8WZ93_CAEBR   E=0.0007 s/c=1.73 id=67% cov=96%
-DFHFENHAEGAKRFDNLANLLRATTP-
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
I 1    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

D 2    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1238	0	0	

F 3    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1238	0	0	

R 4    *	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	*	*	*	4
       0	*	*	*	*	*	*	1238	0	0	

F 5    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1238	0	0	

D 6    *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1238	0	0	

D 7    *	*	1000	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1238	0	0	

Y 8    *	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	1000	8
       0	*	*	*	*	*	*	1238	0	0	

V 9    1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	9
       0	*	*	*	*	*	*	1238	0	0	

E 10   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1238	0	0	

G 11   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1238	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1238	0	0	

K 13   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1238	0	0	

R 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	14
       0	*	*	*	*	*	*	1238	0	0	

F 15   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1238	0	0	

D 16   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1238	0	0	

N 17   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1238	0	0	

L 18   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1238	0	0	

A 19   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1238	0	0	

N 20   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1238	0	0	

L 21   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1238	0	0	

I 22   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1238	0	0	

R 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	23
       0	*	*	*	*	*	*	1238	0	0	

S 24   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	24
       0	*	*	*	*	*	*	1238	0	0	

S 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	25
       0	*	*	*	*	*	*	1238	0	0	

T 26   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	26
       0	*	*	*	*	*	*	1238	0	0	

P 27   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1238	0	0	

T 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	28
       0	*	*	0	*	*	*	1000	0	0	

//