HHsearch 1.5 NAME c5jk2I_ FAM FILE c5jk2I_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5jk2I_.a3m DATE Thu Feb 9 13:08:00 2017 LENG 116 match states, 116 columns in multiple alignment FILT 3 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4006 -0.7850 SEQ >ss_dssp CCHHHHHHHHHHHTTCCHHHHCEEEEECCCCCEEEEEGGGTEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCTTEEEEEEEEEEETTEEEEEEEEEE CCCCTTCEEEEECCCC >sa_dssp EDEECDEBEDCCEEDECCEAACBDACCEEDDBCADBCDEEDCACACDEECEDDACCDDCEEEEDCACBCACCDEDEDCCBDACADBDDCCCADAEADDBE EEECEBCCDACCEDEE >ss_pred CCHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEEEECCCCEEEEEHHHHHEEEEEECCCCEEEEEEEEECCCCHHHHEEEEEEEEEECEEEEEEEHHHH HHHCCCCCEEEEEECC >ss_conf 9168999973378799999973100203578268873555579988520112113302576035899984476300112465678720114532002667 7420558613332059 >Consensus xxiqxxxxxxxxnxxsfqxfLxGLWxQxdxnxsifFdrxxxeIiFsxxnvqEifxidsxxprRxgixFxTxNxsIssIxRRieiexxgxdeixvRvieDv aRaSxWdGxYxkxxxx >c5jk2I_ PPVQTAMRIALWNRATLQHLLAGLWIQTDIHPLLFFDREHAEITFSRASVQEIFLVDSAHTHRKTVSFLTRNTAISSIRRRLEVTFESHAVIHVRAVEDV ARTSMWDGQYTRYHAG >UniRef50_C8PM06(259-364:477) Putative uncharacterized protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PM06_9SPIO E=2e-12 s/c=0.69 id=39% cov=84% ---------------SFQEFLEGLWYQpsarKDQNRSIFFNRSENEIIFSVNNIQELFTIDSVTPRRFGIYFSTKNASISSIHRRIDIELLGIDEVRIRV IDDIARlkigvASNWDGTYRK---- >UniRef50_Q73PF9(254-372:491) Putative uncharacterized protein n=1 Tax=Treponema denticola RepID=Q73PF9_TREDE E=1e-08 s/c=0.51 id=31% cov=96% --IQLLRKLQSGNMESFIDFLSGLWFQEEGNKetgrSVYFDKNDSHIIFNLDNVEEIYEIKTTLPRRYGLFFTTNNKSIPNIIRRVEIEIKGLDEIQVRV IEDVLRikfgtASLWNGKYKK---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * 1000 * * * * * * * * * 1000 * * 3 0 * * * * * * 1614 0 0 Q 4 * * * * * * * * * * * * * 0 * * * * * * 4 0 * * * * * * 1614 0 0 T 5 * * * * * * * * * 1000 * * * * * * 1000 * * * 5 0 * * * * * * 1614 0 0 A 6 1000 * * * * * * * * 1000 * * * * * * * * * * 6 0 * * * * * * 1614 0 0 M 7 * * * * * * * * * * 1000 * * * 1000 * * * * * 7 0 * * * * * * 1614 0 0 R 8 * * * * * * * * 1000 * * * * * 1000 * * * * * 8 0 * * * * * * 1614 0 0 I 9 * * * * * * * 1000 * 1000 * * * * * * * * * * 9 0 * * * * * * 1614 0 0 A 10 1000 * * * * * * * * * * * * 1000 * * * * * * 10 0 * * * * * * 1614 0 0 L 11 * * * * * * * * * 1000 * * * * * 1000 * * * * 11 0 * * * * * * 1614 0 0 W 12 * * * * * 1000 * * * * * * * * * * * * 1000 * 12 0 * * * * * * 1614 0 0 N 13 * * * * * * * * * * * 0 * * * * * * * * 13 0 * * * * * * 1614 0 0 R 14 * * * * * * * * * * 1000 * * * 1000 * * * * * 14 0 * * * * * * 1614 0 0 A 15 1000 * * 1000 * * * * * * * * * * * * * * * * 15 0 * * * * * * 1614 0 0 T 16 * * * * * * * * * * * * * * * 623 1512 * * * 16 0 * * * * * * 1865 0 0 L 17 * * * * 623 * * * * 1512 * * * * * * * * * * 17 0 * * * * * * 1865 0 0 Q 18 * * * * * * * 1589 * * * * * 583 * * * * * * 18 0 * * * * * * 1865 0 0 H 19 * * 1589 1657 * * 1512 * * * * * * * * * * * * * 19 0 * * * * * * 1865 0 0 L 20 * * * * 623 * * * * 1512 * * * * * * * * * * 20 0 * * * * * * 1865 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1865 0 0 A 22 1512 * * 1657 * * * * * * * * * * * 1589 * * * * 22 0 * * * * * * 1865 0 0 G 23 * * * * * 0 * * * * * * * * * * * * * * 23 0 * * * * * * 1865 0 0 L 24 * * * * * * * * * 0 * * * * * * * * * * 24 0 * * * * * * 1865 0 0 W 25 * * * * * * * * * * * * * * * * * * 0 * 25 0 * * * * * * 1865 0 0 I 26 * * * * 1589 * * 1512 * * * * * * * * * * * 1657 26 0 * * * * * * 1865 0 0 Q 27 * * * * * * * * * * * * * 0 * * * * * * 27 550 1657 * 2000 415 * * 1865 1000 0 T 28 * * * 1589 * * * * 1657 * * * * * * * 1512 * * * 28 0 * * * * * * 1865 0 0 D 29 * * 583 1589 * * * * * * * * * * * * * * * * 29 0 * * * * * * 1865 0 0 I 30 * * * * * 1589 * 1512 * * * * * 1657 * * * * * * 30 0 * * * * * * 1865 0 0 H 31 * * * * * * 1512 * * * * 623 * * * * * * * * 31 0 * * * * * * 1865 0 0 P 32 * * * * * * * * 1589 * * * 1512 * 1657 * * * * * 32 583 1589 * 2000 415 * * 1865 1000 0 L 33 * * * * * * * * * 1512 * * * * * 623 * * * * 33 0 * * * * * * 1865 0 0 L 34 * * * * * * * 1657 * 1512 * * * * * * * 1589 * * 34 0 * * * * * * 1865 0 0 F 35 * * * * 583 * * * * * * * * * * * * * * 1589 35 0 * * * * * * 1865 0 0 F 36 * * * * 0 * * * * * * * * * * * * * * * 36 0 * * * * * * 1865 0 0 D 37 * * 550 * * * * * * * * 1657 * * * * * * * * 37 0 * * * * * * 1865 0 0 R 38 * * * * * * * * 1589 * * * * * 583 * * * * * 38 0 * * * * * * 1865 0 0 E 39 * * * 1512 * * * * * * * 1589 * * * 1657 * * * * 39 0 * * * * * * 1865 0 0 H 40 * * 1589 1657 * * 1512 * * * * * * * * * * * * * 40 0 * * * * * * 1865 0 0 A 41 1512 * * * * * * * * * * 1657 * * * 1589 * * * * 41 0 * * * * * * 1865 0 0 E 42 * * * 583 * * 1589 * * * * * * * * * * * * * 42 0 * * * * * * 1865 0 0 I 43 * * * * * * * 0 * * * * * * * * * * * * 43 0 * * * * * * 1865 0 0 T 44 * * * * * * * 623 * * * * * * * * 1512 * * * 44 0 * * * * * * 1865 0 0 F 45 * * * * 0 * * * * * * * * * * * * * * * 45 0 * * * * * * 1865 0 0 S 46 * * * * * * * * * * * 1589 * * * 583 * * * * 46 0 * * * * * * 1865 0 0 R 47 * * * * * * * * * 1589 * * * * 1512 * * 1657 * * 47 0 * * * * * * 1865 0 0 A 48 1512 * 1589 * * * * * * * * 1657 * * * * * * * * 48 0 * * * * * * 1865 0 0 S 49 * * * * * * * * * * * 623 * * * 1512 * * * * 49 0 * * * * * * 1865 0 0 V 50 * * * * * * * 1657 * * * * * * * * * 550 * * 50 0 * * * * * * 1865 0 0 Q 51 * * * 1589 * * * * * * * * * 583 * * * * * * 51 0 * * * * * * 1865 0 0 E 52 * * * 0 * * * * * * * * * * * * * * * * 52 0 * * * * * * 1865 0 0 I 53 * * * * * * * 550 * 1657 * * * * * * * * * * 53 0 * * * * * * 1865 0 0 F 54 * * * * 583 * * * * * * * * * * * * * * 1589 54 0 * * * * * * 1865 0 0 L 55 * * * 1589 * * * * * 1512 * * * * * * 1657 * * * 55 0 * * * * * * 1865 0 0 V 56 * * * * * * * 623 * * * * * * * * * 1512 * * 56 0 * * * * * * 1865 0 0 D 57 * * 583 * * * * * 1589 * * * * * * * * * * * 57 0 * * * * * * 1865 0 0 S 58 * * * * * * * * * * * * * * * 583 1589 * * * 58 0 * * * * * * 1865 0 0 A 59 1512 * * * * * * * * * * * * * * * 1589 1657 * * 59 0 * * * * * * 1865 0 0 H 60 * * * * * * 1512 * * 1589 * * * * * * 1657 * * * 60 0 * * * * * * 1865 0 0 T 61 * * * * * * * * * * * * 623 * * * 1512 * * * 61 0 * * * * * * 1865 0 0 H 62 * * * * * * 1512 * * * * * * * 623 * * * * * 62 0 * * * * * * 1865 0 0 R 63 * * * * * * * * * * * * * * 0 * * * * * 63 0 * * * * * * 1865 0 0 K 64 * * * * 1657 * * * 1512 * * * * * * * * * * 1589 64 0 * * * * * * 1865 0 0 T 65 * * * * * 623 * * * * * * * * * * 1512 * * * 65 0 * * * * * * 1865 0 0 V 66 * * * * * * * 1657 * 1589 * * * * * * * 1512 * * 66 0 * * * * * * 1865 0 0 S 67 * * * * 1589 * * * * * * * * * * 1512 * * * 1657 67 0 * * * * * * 1865 0 0 F 68 * * * * 0 * * * * * * * * * * * * * * * 68 0 * * * * * * 1865 0 0 L 69 * * * * * * * * * 1512 * * * * * 1657 1589 * * * 69 0 * * * * * * 1865 0 0 T 70 * * * * * * * * * * * * * * * * 0 * * * 70 0 * * * * * * 1865 0 0 R 71 * * * * * * * * 1657 * * 1589 * * 1512 * * * * * 71 0 * * * * * * 1865 0 0 N 72 * * * * * * * * * * * 0 * * * * * * * * 72 0 * * * * * * 1865 0 0 T 73 1657 * * * * * * * 1589 * * * * * * * 1512 * * * 73 0 * * * * * * 1865 0 0 A 74 1512 * * * * * * * * * * * * * * 623 * * * * 74 0 * * * * * * 1865 0 0 I 75 * * * * * * * 0 * * * * * * * * * * * * 75 0 * * * * * * 1865 0 0 S 76 * * * * * * * * * * * * 1589 * * 583 * * * * 76 0 * * * * * * 1865 0 0 S 77 * * * * * * * * * * * 1589 * * * 583 * * * * 77 0 * * * * * * 1865 0 0 I 78 * * * * * * * 0 * * * * * * * * * * * * 78 0 * * * * * * 1865 0 0 R 79 * * * * * * 1657 1589 * * * * * * 1512 * * * * * 79 0 * * * * * * 1865 0 0 R 80 * * * * * * * * * * * * * * 0 * * * * * 80 0 * * * * * * 1865 0 0 R 81 * * * * * * * * * * * * * * 0 * * * * * 81 0 * * * * * * 1865 0 0 L 82 * * * * * * * 1657 * 1512 * * * * * * * 1589 * * 82 0 * * * * * * 1865 0 0 E 83 * * 1657 550 * * * * * * * * * * * * * * * * 83 0 * * * * * * 1865 0 0 V 84 * * * * * * * 623 * * * * * * * * * 1512 * * 84 0 * * * * * * 1865 0 0 T 85 * * * 623 * * * * * * * * * * * * 1512 * * * 85 0 * * * * * * 1865 0 0 F 86 * * * * 1512 * * 1589 * 1657 * * * * * * * * * * 86 0 * * * * * * 1865 0 0 E 87 * * * 1512 * * * * 1589 1657 * * * * * * * * * * 87 0 * * * * * * 1865 0 0 S 88 * * * * * 623 * * * * * * * * * 1512 * * * * 88 0 * * * * * * 1865 0 0 H 89 * * * * * * 1512 1657 * 1589 * * * * * * * * * * 89 0 * * * * * * 1865 0 0 A 90 1512 * 623 * * * * * * * * * * * * * * * * * 90 0 * * * * * * 1865 0 0 V 91 * * * 623 * * * * * * * * * * * * * 1512 * * 91 0 * * * * * * 1865 0 0 I 92 * * * * * * * 550 * * * * * * * * * 1657 * * 92 0 * * * * * * 1865 0 0 H 93 * * * * * * 1512 * * * * * * 1589 1657 * * * * * 93 0 * * * * * * 1865 0 0 V 94 * * * * * * * 1657 * * * * * * * * * 550 * * 94 0 * * * * * * 1865 0 0 R 95 * * * * * * * * * * * * * * 0 * * * * * 95 0 * * * * * * 1865 0 0 A 96 1512 * * * * * * * * * * * * * * * * 623 * * 96 0 * * * * * * 1865 0 0 V 97 * * * * * * * 623 * * * * * * * * * 1512 * * 97 0 * * * * * * 1865 0 0 E 98 * * 1657 550 * * * * * * * * * * * * * * * * 98 0 * * * * * * 1865 0 0 D 99 * * 0 * * * * * * * * * * * * * * * * * 99 0 * * * * * * 1865 0 0 V 100 * * * * * * * 1657 * * * * * * * * * 550 * * 100 0 * * * * * * 1865 0 0 A 101 583 * * * * * * * * 1589 * * * * * * * * * * 101 0 * * * * * * 1865 0 0 R 102 * * * * * * * * * * * * * * 0 * * * * * 102 1512 623 * 2322 322 * * 1865 1449 0 T 103 623 * * * * * * * * * * * * * * * 1512 * * * 103 0 * * * * * * 1865 0 0 S 104 * * * * * * * * * * * * * * * 0 * * * * 104 0 * * * * * * 1865 0 0 M 105 * * * * * * * * * 1589 1512 1657 * * * * * * * * 105 0 * * * * * * 1865 0 0 W 106 * * * * * * * * * * * * * * * * * * 0 * 106 0 * * * * * * 1865 0 0 D 107 * * 583 * * * * * * * * 1589 * * * * * * * * 107 0 * * * * * * 1865 0 0 G 108 * * * * * 0 * * * * * * * * * * * * * * 108 0 * * * * * * 1865 0 0 Q 109 * * * * * * * * 1589 * * * * 1512 * * 1657 * * * 109 0 * * * * * * 1865 0 0 Y 110 * * * * * * * * * * * * * * * * * * * 0 110 0 * * * * * * 1865 0 0 T 111 * * * * * * * * 1589 * * * * * 1657 * 1512 * * * 111 0 * * * * * * 1865 0 0 R 112 * * * * * * * * 623 * * * * * 1512 * * * * * 112 0 * * * * * * 1865 0 0 Y 113 * * * * * * * * * * * * * * * * * * * 0 113 0 * * * * * * 1000 0 0 H 114 * * * * * * 0 * * * * * * * * * * * * * 114 0 * * * * * * 1000 0 0 A 115 0 * * * * * * * * * * * * * * * * * * * 115 0 * * * * * * 1000 0 0 G 116 * * * * * 0 * * * * * * * * * * * * * * 116 0 * * 0 * * * 1000 0 0 //