HHsearch 1.5 NAME c5hodD_ FAM FILE c5hodD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5hodD_.a3m DATE Thu Feb 9 19:26:14 2017 LENG 58 match states, 58 columns in multiple alignment FILT 110 out of 1873 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4239 0.4237 SEQ >ss_dssp CCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHC >sa_dssp EEEDEDDEDCDDCBCECCEECEECEEEDCEEBCEEBECECECBDDCBCEDDEDCEEEE >ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC >ss_conf 9877688999999999999878988899999999808788796797347889964249 >Consensus RxRxxxtxxQxxxLexxFxxnxxPxxxxxxxLaxxxxlxxxxIxxWFxNrRxkxKkxk >c5hodD_ RPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLK >UniRef50_O17102(232-283:733) Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=O17102_CAEEL E=0.0003 s/c=0.89 id=23% cov=91% ----SFSYDAIHFLEQEYRKTKYISSTDCQKISEKIHLDEELIEKWFRARRATSKR-- >UniRef50_A2ANE0(134-189:191) Reproductive homeobox 2F n=10 Tax=Murinae RepID=A2ANE0_MOUSE E=9e-08 s/c=1.03 id=25% cov=98% --RHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYK >UniRef50_A8XE24(333-388:419) Putative uncharacterized protein n=3 Tax=Caenorhabditis briggsae AF16 RepID=A8XE24_CAEBR E=3e-05 s/c=0.89 id=25% cov=98% --RFVFTTHQKQTLQSVYKITQRPTREMHQKLADYLEISIETVENFFMNARRRDRHRQ >UniRef50_B8MKW2(235-291:328) Homeobox transcription factor, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MKW2_TALSN E=0.0003 s/c=0.81 id=24% cov=95% RRRGNLPKNVTDVLRAWFHEhldHPYPTEEDKQRFMNETNLTMSQISNWFINARRRQ---- >UniRef50_UPI0000F2E49C(105-162:309) PREDICTED: similar to NANOG n=1 Tax=Monodelphis domestica RepID=UPI0000F2E49C E=1e-11 s/c=1.22 id=25% cov=102% KMRTVFSQAQLNVLNSRFVEQKYLSPQQIRNVAENLNLTYKQVKTWFQNQRMKSKRWQ >UniRef50_C4Y7U3(159-216:378) Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y7U3_CLAL4 E=5e-10 s/c=1.13 id=24% cov=102% RKRRRTSPHELAILNQEFQAGSTPNKTRRIEIAKKVSMTEKAIQIWFQNKRQSLRRLR >UniRef50_Q54X22(171-228:327) Homeobox protein 8 n=1 Tax=Dictyostelium discoideum RepID=HBX8_DICDI E=2e-05 s/c=0.86 id=19% cov=102% KTRSRKTKEHKDQLENLFNSNPFPDAIEKEIIAYQFDMSVEQIVTWFKHKRENLKKAQ >UniRef50_Q7RYM8(404-452:934) Putative uncharacterized protein n=1 Tax=Neurospora crassa RepID=Q7RYM8_NEUCR E=0.0006 s/c=0.92 id=22% cov=86% -----LTREAIAHLEDCFRKDPQPSETIIDVLAFTLNVHPNKIKVWFDQRRQHE---- >UniRef50_D1IB79(55-117:464) Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IB79_VITVI E=2e-05 s/c=0.80 id=24% cov=100% KPRWNPKPEQIRILEAIFN-SGMVNPPRDEIRKIRAQLQEfgqvgdANVFYWFQNRKSRSKHKQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 1562 * * * * * 597 * * * * * 1 0 * * * * * * 6118 0 0 P 2 4277 * * 5959 * 5395 4073 5853 2092 * 3665 3484 2960 6466 3667 3730 3346 4765 * * 2 0 * * * * * * 6341 0 0 R 3 * * * * * * * * 3428 5717 * * 5943 * 198 * * * * * 3 23 5982 * 1000 1000 * * 6429 1000 0 T 4 5167 * * * 4527 6334 5243 4585 3205 * 6370 5960 4866 4922 2961 5019 1294 5510 4176 * 4 18 6368 * 0 * * * 6512 1000 0 T 5 5124 6886 * 6043 6298 5462 6826 4526 3427 4533 * 3840 4924 6767 1648 2793 4679 3190 * * 5 0 * * * * * * 6720 0 0 I 6 5303 * * * 1363 * 6361 3260 5506 2173 6848 * 4581 * * * 4588 * 5393 3189 6 0 * * * * * * 6778 0 0 T 7 6899 6447 4079 5728 * 6708 5501 * 4702 6705 6858 3759 4490 5573 6980 1928 1308 * * * 7 0 * * * * * * 6769 0 0 A 8 4162 * 3314 3319 * 6612 6741 * 2710 6840 6742 6879 2418 4390 3361 3576 3641 5090 * 5729 8 0 * * * * * * 6804 0 0 K 9 4013 * 3342 1837 4777 6693 3476 * 3716 5202 7243 5145 6918 3799 5148 3567 6225 6051 4924 4991 9 36 5357 * 0 * * * 6809 1244 0 Q 10 4183 * 6604 3213 * * 5805 * * 6479 * 5111 6047 608 * 5606 5259 4638 * 6551 10 0 * * * * * * 6809 0 0 L 11 * 5731 * 5343 * * 5671 3189 2984 1618 * * * * 3764 4017 3374 2894 * 6832 11 0 * * * * * * 6809 0 0 E 12 3377 5818 3987 2331 * 5830 4869 6604 3350 5612 6061 3443 4834 3212 3408 4217 5609 5981 * 6747 12 0 * * * * * * 6809 0 0 T 13 3156 6874 * 3605 5323 5825 5730 2227 4260 4106 * 5346 * 5486 4313 5348 3628 2257 * * 13 0 * * * * * * 6813 0 0 L 14 * * * * 6082 * * 6481 * 122 4491 * 6542 * * * * * * * 14 0 * * * * * * 6813 0 0 K 15 * * 4800 961 * 6049 6235 6481 3891 4339 6451 3760 * 3436 3290 * 6987 7306 * * 15 12 6952 * 1585 585 * * 6813 1000 0 N 16 2307 * 4723 3111 6773 4064 6451 * 2955 5542 6905 4263 * 3446 2877 4033 5704 5291 * 5686 16 0 * * * * * * 6813 0 0 A 17 3458 4193 * 3164 4085 * 5118 3436 7017 3407 6997 5075 * * 4686 3844 5003 3566 3186 3487 17 17 6451 * 1585 585 * * 6813 1000 0 Y 18 * * * * 510 * 5680 * * 5280 * * * * * * * * 5955 2081 18 11 6979 * 0 * * * 6813 1000 0 K 19 3000 * 4212 2726 * 5691 4015 5751 3333 4666 5819 3732 * 2608 4034 3631 5899 5963 * * 19 87 4458 6290 1703 529 * * 6813 2775 0 N 20 3947 6723 6822 2796 5805 * 5384 3166 2312 5527 6864 3637 * 4014 3973 3762 4143 4772 6044 * 20 121 3632 * 1498 630 0 * 6788 3036 1000 S 21 5955 5016 3636 5006 * 4520 4160 7263 4419 * * 1301 * 5054 6428 2997 3113 * * * 21 9 7303 * 3000 193 * * 6813 1000 0 P 22 5967 6825 4790 6747 * 4292 3553 6633 3070 * 5345 3908 1876 3329 3346 4140 5030 * * 6012 22 26 5783 * 0 * * * 6813 1594 0 K 23 5173 * * 6514 3395 * 3343 * 3446 5650 5564 3997 * 6491 3421 4533 4662 6012 6746 1473 23 23 5981 * 1000 1000 * * 6813 1000 0 P 24 5981 * * * 6516 * * 3678 * 3134 * * 542 * 6183 6242 * 3888 * * 24 0 * * * * * * 6813 0 0 A 25 5069 * 2271 4502 * 4507 6731 6183 4813 * * 3325 4712 5123 * 1946 2396 * * * 25 0 * * * * * * 6813 0 0 R 26 3696 6559 5345 3820 5342 5078 5704 4761 2688 4669 5712 5342 3397 4949 3171 2987 4764 4368 6985 6554 26 19 6240 * 1000 1000 * * 6813 1000 0 H 27 3292 * 2951 2233 5556 5008 7166 5274 3196 6739 7234 4997 5501 3831 5224 4862 3136 6696 * 4743 27 0 * * * * * * 6813 0 0 V 28 4465 * 4181 1861 * * * 4971 3429 4197 4517 6985 * 2856 3675 5800 2869 5489 * * 28 0 * * * * * * 6813 0 0 R 29 5474 5108 6290 * * * 6558 2688 2558 3553 4778 6589 * 5049 1592 6012 4270 5726 * 5650 29 0 * * * * * * 6813 0 0 E 30 4179 5042 3705 2152 6813 6696 5649 3825 3388 5599 5049 4335 * 3263 3999 4253 4767 5283 6082 6428 30 10 7250 * 2000 415 * * 6813 1000 0 Q 31 3533 6905 4207 2445 * 5827 6666 3712 3220 3798 5039 5155 * 3344 3031 4630 5704 5682 6921 5813 31 0 * * * * * * 6813 0 0 L 32 6240 * * * 5797 * * 2057 * 698 4205 * * * 5144 * * 5613 * 6823 32 16 6481 * 3907 100 * * 6813 1000 0 S 33 851 5981 * * 6690 3986 * 5563 6290 * 4550 6183 * * 4833 2735 4627 4936 * 6942 33 0 * * * * * * 6813 0 0 S 34 3324 6082 3892 2738 6491 6134 6026 4715 2306 5959 6284 4159 * 3167 3833 5355 4355 5247 7160 6137 34 0 * * * * * * 6813 0 0 E 35 3646 * 7198 2587 5059 * 5570 4983 2414 4438 5739 5396 * 3585 2992 4410 4228 4269 5955 6558 35 13 6856 * 2000 415 * * 6813 1000 0 T 36 4361 4359 * * 4729 4269 * 3027 5031 1539 4178 6530 * * * 5643 2467 4362 * * 36 12 6942 * 3700 115 * * 6813 1000 0 G 37 6240 6484 4130 4572 * 1233 4240 * 3654 * * 2496 6012 3822 5739 5094 * 7121 * * 37 39 5243 * 3660 119 * * 6813 2079 0 L 38 6405 6515 * * 6082 * * 2762 * 1055 2762 * * * 6632 6240 6633 2787 6979 * 38 13 6825 * 0 * * * 6813 1000 0 D 39 * * 2928 6608 * 5220 5136 * 4186 5813 * 4714 3022 5297 5350 1687 2262 * * * 39 0 * * * * * * 6813 0 0 M 40 4346 * 4329 1867 5157 6892 6484 5201 3110 4602 5998 5821 3480 5701 4684 5804 4551 3548 6632 4110 40 19 6290 * 2585 263 * * 6813 1000 0 R 41 4683 6188 5032 3260 * 5257 4947 5800 2282 5433 * 3729 4921 4704 2591 2905 4039 * * * 41 0 * * * * * * 6813 0 0 V 42 5039 6188 * 3553 * * 5955 5984 3409 5747 * 3485 * 1503 3204 4857 4051 3633 * * 42 0 * * * * * * 6813 0 0 V 43 * * * * * * * 1023 * 5981 * * * * * * 5686 1081 * * 43 17 7811 7047 2807 222 * * 6813 1000 0 Q 44 4813 6186 4506 4472 5543 * 5691 7012 1959 * 6996 4597 7123 2578 2758 4815 4207 4197 5658 5614 44 0 * * * * * 0 6810 0 1000 V 45 5863 5976 5865 5190 5695 5332 5642 2718 3407 * 5464 2541 * * 5153 5406 3563 2217 * 3919 45 0 * * * * * 0 6810 0 1000 W 46 * * * * 5501 * * 6244 * * * * * * 5987 * * * 109 5540 46 0 * * * * * 0 6810 0 1000 F 47 * * * * 111 * * 6160 * 5373 * * * * * * * 5771 * 5820 47 0 * * * * 0 * 6810 0 1000 Q 48 3842 4883 5679 4646 * 5845 5093 6818 2883 5743 4873 6475 * 1457 3720 3292 6062 * * 5353 48 29 * 5672 * * * * 6813 0 0 N 49 6554 * 4812 6495 * 6623 4336 * 4293 * * 435 * 4168 5711 * 5818 * * * 49 0 * * * * * 0 6866 0 1699 R 50 3854 * * 4829 * * 4630 * 2414 5978 * 5458 * 3885 1074 6716 4097 * 6511 7102 50 12 * 6928 * * * 0 6855 0 1699 R 51 * * * * * * * * 4004 4624 * 5677 * * 188 * * * * * 51 0 * * * * 0 * 6854 0 1886 A 52 1823 6701 * 5067 5617 * * 5002 5570 4391 4631 4052 * 3047 2782 3555 4654 4830 * 5031 52 54 4754 * 1165 852 * * 6706 1892 0 K 53 3899 * * 5924 * * 5595 6356 1446 6791 * 4877 * 5086 1412 4946 5457 6248 * * 53 17 6383 * 1585 585 * * 6703 1000 0 E 54 3715 * 2784 2611 5885 5712 * 5477 6414 3480 4243 6182 * 3211 * 3167 6459 4814 3272 5730 54 0 * * * * * * 6644 0 0 K 55 5282 * * 6246 * * 6372 * 756 6368 * * * * 1536 * * * * * 55 25 5853 * 2000 415 * * 6588 1000 0 R 56 4708 * 6145 * * 6772 4395 * 1451 5886 6388 4110 * 4608 1520 5925 5966 5949 * * 56 0 * * * * * * 6389 0 0 L 57 3329 6096 * 5037 * * 4167 3912 3383 2648 2963 * * 3295 3296 4534 5177 4767 6041 5421 57 0 * * * * * * 6094 0 0 K 58 * * * 2814 * * * * 934 * * * * 1937 3774 * * * * * 58 0 * * 0 * * * 5863 0 0 //