HHsearch 1.5 NAME c5hl8B_ FAM FILE c5hl8B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5hl8B_.a3m DATE Sat Jan 30 08:32:36 2016 LENG 81 match states, 81 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4444 0.8301 SEQ >ss_dssp CCCHHHHHHHHHHHHHTCTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHTTTTEEEEECCCEEETTEEEEEEEEEEC >sa_dssp ECDCEDADDCBEEACEEBEDCEDDDDDDEEECCDACACABBEDEEBCDDACDDADECADCDEDECDEDEEBBCBDACABCE >ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECC >ss_conf 950899986667763147785287897416678899998649989999999985205115305443568728999999309 >Consensus xaxxlxxLxxLxxxlxxxxxixlxsLrydxxrxeLrlxxxAxxfxxlExlrxxlxxxxxVexGxxxxxxxxVxGxlxirgx >c5hl8B_ HAPLVDRLSALQNILSETPGIRLRALSWDAAGNRLQLDIAAVSSRALEQFTQRAQPRFRVRPGDXITKPDGIEGQLTLEEN >UniRef50_C4L990(310-392:395) General secretion pathway protein L n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L990_TOLAT E=3e-17 s/c=1.08 id=26% cov=99% QAPLtdsfLSQLALLAPLLHKTPEIELQQLRFEADKQEFRLQISAKDFGMLDKFRNQANTTFATEMTNMQDQGGRVSGMLIIR-- >UniRef50_Q0ASQ5(325-404:406) General secretion pathway L n=1 Tax=Maricaulis maris MCS10 RepID=Q0ASQ5_MARMM E=3e-06 s/c=0.66 id=21% cov=90% -------ITALDELVDGNDSVRIDHVRYDPARAALSVGATYSDFSDFDDLNARAdQLGLRLDDGGARESTAGIEGEFVMR-- >UniRef50_Q3ILN2(320-400:402) Putative general secretion pathway protein L n=3 Tax=Alteromonadales RepID=Q3ILN2_PSEHT E=3e-16 s/c=1.06 id=16% cov=99% -AGFLELTTELVGVFSQVSNFTPETLRYDKKRNELRMRARAKDFQTFGKVKAILEQQgLTVDQGSLSNDGDFVVGEIKLRG- >UniRef50_Q0VPY1(298-376:379) General secretion pathway protein L n=2 Tax=Alcanivorax RepID=Q0VPY1_ALCBS E=4e-07 s/c=0.71 id=22% cov=89% -------LRPVAQVLKEI-NVDPKRLQYDQRENTLLLDVGAKDYAQLEQLQNALKKQGaRASIANYRNSAQGVSARIKVE-- >UniRef50_C4K3G0(326-405:418) Putative uncharacterized protein gspL n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3G0_HAMD5 E=2e-10 s/c=0.84 id=21% cov=86% ----------LAQIAIGIANMRIQprdmhwfALRYAREHHSLYLQIGVNHFSEFEQLRNGLSEKFTVEQGVLVQEKKRVNSTFTLK-- >UniRef50_Q1N4H6(287-365:366) Type II secretory pathway, component PulL n=1 Tax=Bermanella marisrubri RepID=Q1N4H6_9GAMM E=2e-09 s/c=0.80 id=20% cov=93% -------LSGIGNPISSMSSLELLGLRYNQSKATLEIELNAPSIAELDKLKKSLEQQsYTVEIAAANNQGGKIKGLLKVNKN >UniRef50_B8KQM0(335-411:414) General secretion pathway protein L n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KQM0_9GAMM E=1e-08 s/c=0.79 id=19% cov=90% -------LAAITSVLAQETGITLANLSFSGRQGQVRVNLLAPDFSAVERLRSAMSQRgYQTTLESSSAAETRVRARLRIE-- >UniRef50_B8GU52(337-408:412) General secretion pathway protein L n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GU52_THISH E=6e-07 s/c=0.77 id=18% cov=80% -------------VLTRLSGLSIQSLRYRPGQMELDLQLD--SLQSLDRLKQELEADaaWAVEIQSASARDDGVESRIQIR-- >UniRef50_A1U0C5(368-434:435) General secretion pathway protein L n=3 Tax=Marinobacter RepID=A1U0C5_MARAV E=9e-08 s/c=0.87 id=19% cov=77% -------------------AVTFNSINYSRSRGELVVDIRADSYDRLSRLRNgLASEGLQAQIGSVVNESSGARGRLTVSG- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * 1641 * * 1531 * * * * * * 1585 * * * * * * 1 0 * * * * * * 2062 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 2798 0 0 P 3 * * * * * 2440 * * * * * * 965 * * 2867 * 2588 * * 3 0 * * * * * * 3137 0 0 L 4 * * * * 1755 * * * * 953 * * * * * * * 2418 * * 4 105 3834 * 2000 415 * * 4003 1000 0 V 5 * * * * 3828 * * 2878 * 675 4517 * * * * * * 3015 * * 5 0 * * * * * * 4084 0 0 D 6 1566 * 2465 2313 * * * * * * * * * * * 2136 4257 * * * 6 0 * * * * * * 4084 0 0 R 7 * * * 3879 * * * * * 3785 1941 * * 3046 2959 * * 3034 2137 * 7 0 * * * * * * 4084 0 0 L 8 * * * * 4601 * * 4080 * 365 3751 * * * * * 4358 * * * 8 0 * * * * * * 4623 0 0 S 9 2334 * 3781 * * 4926 * * * 4820 * 4502 * 5386 4373 1903 2351 3628 * * 9 0 * * * * * * 4625 0 0 A 10 1985 * * 2842 * 3573 * * 4027 4785 * 4932 2382 2934 4701 * * 4948 * * 10 0 * * * * * * 4625 0 0 L 11 * * * * * * * 2449 * 515 4848 * * * * * * 3604 * * 11 0 * * * * * * 4895 0 0 Q 12 1632 * 4529 * * 3051 * * 4795 * * * 3388 2423 * 4099 3403 4552 * * 12 0 * * * * * * 4895 0 0 N 13 4925 * * 2605 * 4463 * * * * * 3674 1632 2167 4822 3347 * * * * 13 0 * * * * * * 4998 0 0 I 14 2020 * * * * * * 3096 * 2460 5048 * 4659 * * * 3108 2057 * 5125 14 0 * * * * * * 4949 0 0 L 15 4156 * * * 2206 * * 2677 * 1123 3703 * * * * * * 4846 * * 15 0 * * * * * * 5103 0 0 S 16 3076 * 3640 * * 5320 5165 4156 1884 * * 4585 * 5183 * 1944 3440 * * * 16 84 4906 5422 1000 1000 * * 5103 1000 0 E 17 4281 * 3535 3048 * 2774 * * 3340 * * 4985 4150 2345 4830 2800 * 4923 * * 17 0 * * * * 0 * 5103 0 1000 T 18 5448 * 5026 5196 * * * 3455 * 3413 4830 3560 5281 3735 * 4967 2544 1690 * * 18 84 * 4136 * * * * 5103 0 0 P 19 3537 * 2696 5026 * 5271 * * * * * * 1527 * * 1719 4259 * * * 19 0 * * * * 0 * 5123 0 1763 G 20 3345 * 3595 2751 * 1831 * * * * * 2912 * 3837 * 2909 4232 * * * 20 0 * * * * * * 5222 0 0 I 21 * * * * 4721 * * 1626 * 2031 3472 * 5236 * * * 5170 2006 * * 21 0 * * * * * * 4945 0 0 R 22 * * 5033 3362 * * * * 2631 * * 5193 * 3169 2181 2848 2604 4367 * * 22 0 * * * * * * 4945 0 0 L 23 5526 * * * 4168 * * 2221 * 1206 5048 * 2621 * * * * 3609 * * 23 0 * * * * * * 4987 0 0 R 24 4077 * 3317 3128 * 5493 * 5547 4141 5242 * 4108 * 1848 3242 4142 3813 5052 * * 24 63 4547 * 2807 222 * * 4987 1000 0 A 25 2690 * * * * 3604 5048 * * 4589 * 4506 * 3900 5008 1207 3348 5837 * * 25 0 * * * * * * 4987 0 0 L 26 * * * * 3442 * * 3330 * 503 5204 * * * * * * 3723 * * 26 0 * * * * * * 4993 0 0 S 27 3725 * 4550 * * * * * 3011 * * 3313 * 4162 1160 3007 5100 * * * 27 0 * * * * * * 4993 0 0 W 28 * * * * 1546 * * * * * * * * * * * * * 4127 736 28 58 * 4665 * * * * 4993 0 0 D 29 4531 * 1014 4414 * * * * * * * 2832 * 5222 5137 2191 * * * * 29 0 * * * * * 0 4989 0 1617 A 30 2247 * 3324 5602 * 2902 * * 4780 * * 5049 4093 2432 3747 2957 5550 * * * 30 39 * 5222 * * 0 * 4989 0 1617 A 31 2860 * 3128 3852 * 4480 * * 2302 * * 3634 * 4461 2746 2875 5666 * * * 31 0 * * * * * 0 4973 0 1000 G 32 4624 * * 5135 * 4974 4515 * 4124 * * 4173 * 2615 1056 3776 5295 * * * 32 0 * * * * 0 * 4973 0 1000 N 33 3180 * 5938 * * 1596 4551 * 5204 * 5267 2557 * 3001 4133 3684 5865 * * * 33 0 * * * * * * 4993 0 0 R 34 3821 * 4550 642 * * * 5100 * * * * * 5653 4145 4551 3361 * * * 34 0 * * * * * * 4993 0 0 L 35 * * * * 4085 * * 3181 * 506 5108 * * * * * * 3353 * * 35 0 * * * * * * 4993 0 0 Q 36 3830 * 5267 4398 * * 5100 * 5287 5145 * 5315 * 3110 1027 4419 5549 5025 * 4551 36 0 * * * * * * 4993 0 0 L 37 4810 * * * * * * 2450 * 978 3569 * * * * * * 2401 * * 37 0 * * * * * * 4993 0 0 D 38 4977 * 2482 3529 * 5074 * * * * * 2506 * 1363 4829 4810 4744 * * * 38 0 * * * * * * 4993 0 0 I 39 1811 * * * * * * 2028 * 1683 * * * * * * * 2660 * * 39 0 * * * * * * 4993 0 0 A 40 4984 * 4297 4366 * 3817 * * 5178 2795 * 4483 * 2749 2740 3714 2759 4076 * * 40 38 * 5268 * * * * 4993 0 0 A 41 580 * * * * 4240 * * * * * * * * * 3340 4318 4501 * 3554 41 0 * * * * * 0 4970 0 1000 V 42 2547 * 4138 4791 * 5498 * * 2278 * 5482 3972 2763 5336 5679 2842 4610 4337 * * 42 0 * * * * 0 * 4970 0 1000 S 43 5558 * 1459 * * 3737 4551 * * * * 2690 * * * 1658 5295 * * * 43 0 * * * * * * 4993 0 0 S 44 * * * * 660 * * 4637 * 4222 * * * * * 4350 * 5327 * 2327 44 0 * * * * * * 4993 0 0 R 45 2679 * 3059 3049 * 3658 * * * * * * 5839 1884 4984 2294 * * * * 45 0 * * * * * * 4993 0 0 A 46 2393 * 2572 2803 * * 5495 * 5824 * 5616 * * 2688 5025 3452 3299 4587 * 5839 46 0 * * * * * * 4993 0 0 L 47 * * * * 1418 * * 3985 * 1132 * * * * * * * 3233 * * 47 0 * * * * * * 4993 0 0 E 48 * * 2189 558 * 4829 * * * * * * * * * 5025 4810 * * * 48 0 * * * * * * 4993 0 0 Q 49 4194 * 4810 * * * 5092 * 2157 * * * * 1796 1982 * 3118 * * * 49 0 * * * * * * 5154 0 0 F 50 4043 * * * 1548 * * 4936 * 972 * * * * * * * 5107 * 5278 50 0 * * * * * * 5154 0 0 T 51 5391 * * * * * * * 2137 * * 4769 * 3007 1118 3854 4117 * * * 51 35 5374 * 0 * * * 5139 1000 0 Q 52 3149 * * 2656 * * * * 5166 * 5365 2604 * 2229 3820 2899 3766 5614 * * 52 107 3804 * 0 * * * 5093 1607 0 R 53 2446 * * 3810 * 4591 * 3123 5614 2695 * 5210 * 3111 2596 3750 * 4989 * * 53 0 * * * * * * 5093 0 0 A 54 1240 * * * * * * * * 1124 4109 * * * * * * 4063 * * 54 135 3488 * 0 * * * 5026 2123 0 Q 55 3115 * * 2018 * 3405 * * 4850 * * 5011 5281 2674 5233 2034 5348 * * * 55 106 3821 * 0 * * * 5026 1918 0 P 56 2303 * * 2336 * 4314 * * 3244 4547 * * 4667 2883 * 3948 2636 * * * 56 108 3799 * 0 * * * 5026 2101 0 R 57 * * 3112 * * 1823 5281 * 3436 * * 5348 * 2775 2345 * 4227 * * 3994 57 235 2731 * 458 1880 * * 5026 2875 0 F 58 * * * * 1582 4037 * * * 1911 * * * 5318 * * * * 4139 1958 58 51 4850 * 0 * * * 5026 1000 0 R 59 2962 * 5106 3505 * * * 5348 * 3237 * 5482 * 2407 2802 4300 2427 4929 * * 59 0 * * * * * * 5026 0 0 V 60 2874 * * * * * * 5024 * 3732 * * * * * * 3505 579 * * 60 38 5251 * 0 * * * 5026 1000 0 R 61 5106 * 2973 1391 * * * * 5348 * * * * 1774 4667 4850 3809 * * * 61 0 * * * * * * 5026 0 0 P 62 4626 * 3426 * * 4944 * 2212 * 2825 5011 * 3835 1517 * * 5233 * * * 62 0 * * * * * * 5026 0 0 G 63 3955 * 4929 3809 * 481 5192 * * * * 5209 * 5088 * * 5011 * * * 63 0 * * * * * * 5026 0 0 D 64 2404 * 4667 3364 * 3856 * * * * * 3289 * 2965 * 1711 5106 4624 * * 64 0 * * * * * * 5026 0 0 X 65 1897 * * * * 5795 * 3598 * 1655 2850 * * 5306 * 3771 * 4640 * 4797 65 0 * * * * * * 4951 0 0 I 66 3798 * * * * * * 3889 5233 * * 2347 * 3969 2673 1569 * 3645 * * 66 0 * * * * * * 5026 0 0 T 67 3312 * 5011 3840 * * * * 2780 * * 1890 5233 2587 3459 4063 4667 * * * 67 0 * * * * * * 5026 0 0 K 68 4832 * 3727 2235 * * * * 4656 * * 4000 * 2454 2310 2391 * * * * 68 0 * * * * * * 5033 0 0 P 69 3478 * 2722 3442 * 1433 * * 3902 * * 4407 3330 * * 4650 4534 * * * 69 0 * * * * * * 5033 0 0 D 70 3833 * 1820 2854 * 2902 * * 4611 * * 4433 * 3171 * 3089 4091 * * * 70 0 * * * * * * 5033 0 0 G 71 4164 * * * 5080 1328 * * 5047 4389 * * * 3564 1903 4819 5424 * * 5177 71 0 * * * * * * 5033 0 0 I 72 4650 * * * * * * 2571 * * * * * * * * * 337 * * 72 0 * * * * * * 5033 0 0 E 73 3682 * * 2367 4607 * * 5369 5047 * 5177 3542 * 5094 2833 2218 3588 4275 * * 73 0 * * * * * * 5033 0 0 G 74 2675 * * * * 502 * * * * * * * * * 2865 * * * * 74 0 * * * * * * 5033 0 0 Q 75 3870 * * 3333 * 4916 * * 5122 4936 4998 * * 4652 1432 3861 2314 5258 * * 75 0 * * * * * * 5024 0 0 L 76 * * * * 2124 * * 2767 * 1075 4737 * * * * * * 3166 * * 76 0 * * * * * * 5024 0 0 T 77 * * 5057 * * * * 3118 3251 * * * * 5035 4560 4351 1304 2166 * * 77 0 * * * * * * 4975 0 0 L 78 * * * * * * * 1414 * 1454 4563 * * * * * * 2201 * * 78 0 * * * * * * 4975 0 0 E 79 * * * 2690 * 4162 * * 2428 * * 4860 * 4104 1111 4392 * * * * 79 0 * * * * * * 4964 0 0 E 80 * * * 3464 * 516 * * 3217 * * * * * * * * 3287 * * 80 0 * * * * * * 3786 0 0 N 81 * * * * * * * * * * * 372 * * * 2136 * * * * 81 0 * * 0 * * * 2710 0 0 //