HHsearch 1.5 NAME c5h3vA_ FAM FILE c5h3vA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5h3vA_.a3m DATE Sat Apr 15 08:45:04 2017 LENG 103 match states, 103 columns in multiple alignment FILT 104 out of 158 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.4007 -1.4859 SEQ >ss_dssp CCCCBCCEEEEECTTCGGGCCSEEEECSSCEEEEECTTSCCCEEEEECTTSCEEECCEEECTTCCGGGCEEEEESCCCSEEEEEETTEEEEEEETTTTSC TTC >sa_dssp EEEDBEDBDCDDEEEAEDACBDDBABCDECABAAADEEBDCBDBCBBDEEEEDDECEDDDBEECEDEEBCBCCADCCBEDACACDEEBCABACBEBDEEE CEE >ss_pred CCCCCCEEEEEECCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCEEEEEEECCCCCC CCC >ss_conf 9621431489645888542326899689089999188886524999879986543345971785567643899942160477750884999996675788 899 >Consensus PxxxNxxYxxxxxxgsxxixPxxvfDDGxxTyxxfxxxxxxPaifxvxxdGxexlvnxxvxgxxxxxxxxxiVVxxvxxxxxLRxGxxvvxIxNxxxxxx xxt >c5h3vA_ PVPRNYNYYQAPEKRSKHIMPSEIFDDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIKDKALVTVINKGYGKN PLT >UniRef50_A0P1U5(241-326:328) DNA transformation compentancy n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1U5_9RHOB E=8e-09 s/c=0.71 id=25% cov=82% ---RGWN--QYKLWGDKKLRPEQVFRDDHFTYIQFGdkwNDVELPTAYVV-VDGIDELVNTRVQG-------TTFIVESTHRLITLKSGQSFMCIQYKG- ------ >UniRef50_A5TXL5(174-270:278) Possible conjugal transfer protein TrbG n=3 Tax=Fusobacterium RepID=A5TXL5_FUSNP E=2e-07 s/c=0.59 id=26% cov=90% ----NLNFEYTWNKNKETWSPVQIFDDGEQTFIVMGekvKATELPILFIKDEQtGEGASVRHRYDPET-----RYYTVDRLFKQAYLRYGEKEIIIKRKG sFIKSP-- >UniRef50_B5XPN1(187-282:296) P-type conjugative transfer protein VirB9 n=4 Tax=Enterobacteriaceae RepID=B5XPN1_KLEP3 E=1e-20 s/c=1.05 id=27% cov=94% --PRNWRYTKRVAAGSAFIAPDFTWDDGRFAYIGFSPTKTLPSVFRV-INGQEQAV---TPGTIKRGNYTVMVVPA-SPQLVLRYGTSVVGIENAEFGRI PLT >UniRef50_C6XER8(200-273:303) Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XER8_METSD E=6e-05 s/c=0.66 id=21% cov=50% -------------------RPKFIYNNGTKTCILMPDDApswEAAAFVIIGKDDKKQLTNYRVLKQ-------WYVIDKV-------------------- ------ >UniRef50_Q3YT83(190-272:274) Conjugal transfer protein TrbG/VirB9/CagX n=5 Tax=canis group RepID=Q3YT83_EHRCJ E=1e-07 s/c=0.69 id=28% cov=67% --------------------PVELFDDGKLTYFKFANNNQiIPQVFIYNNLGEKVPCKMLLLNNY-------VIIKGVHKNLYLEYKNESVKITNK---- ---- >UniRef50_A1WSV1(155-241:265) Conjugal transfer protein TrbG/VirB9/CagX n=2 Tax=Proteobacteria RepID=A1WSV1_VEREI E=6e-17 s/c=1.02 id=23% cov=85% ----NTDYVWRGD--NELLKPTAAYDDGRFTRLVYDHSGELPVFFKVLPDGTEALLNSNVDPDHKQ----TVVLHEVIRTVRARMGDQVIEIINRAY--- --- >UniRef50_A1VV43(197-273:280) Conjugal transfer protein TrbG/VirB9/CagX n=2 Tax=Comamonadaceae RepID=A1VV43_POLNA E=4e-12 s/c=0.94 id=21% cov=75% -------------EGNKEYERMHAYDDGRMTFIRMPPGiQDLPALFLVDTDNKLVPINYTVLDRKGHDDRDVLKVERTNPKWLLKIKKSV---------- ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 4086 0 0 V 2 2707 * * 2407 * * * * 3946 * * * * 4645 3278 4578 * 1292 * * 2 0 * * * * * * 4317 0 0 P 3 4573 * * * 5056 5100 * 5380 3482 4774 * * 901 * 5661 * 4311 2807 * * 3 0 * * * * * * 4917 0 0 R 4 4977 * * * * * * * 2531 3428 * * * 4924 1344 3373 * 2741 * 5091 4 0 * * * * * * 5208 0 0 N 5 * * 5063 * * 4411 * * 5409 * * 153 * * * * * * * * 5 38 5277 * 1000 1000 * * 5608 1000 0 Y 6 * * * * 2767 5591 5930 5725 * 3541 5783 * * 5204 5922 3893 3330 * 1958 2151 6 0 * * * * * * 5677 0 0 N 7 4652 * 1830 5270 * 5936 * * 4893 * 6545 1523 5684 6011 3193 3664 * * * 5562 7 29 * 5642 * * * * 5755 0 0 Y 8 * 6002 * * 3178 * * * * * * * * * * * * * 6251 216 8 107 * 3810 * * * 0 5836 0 1000 Y 9 * * 4127 4993 5206 3591 6696 * 6219 3379 4608 6288 * 4896 3188 3666 2236 3559 3823 4698 9 84 * 4141 * * 2389 306 5783 0 2769 Q 10 4759 * * * 2961 6727 * 3772 3446 4251 2825 * * 3325 5738 * 5050 2701 4051 3266 10 97 5605 4482 0 * 2657 249 5784 1000 2924 A 11 3020 5893 * 3938 5858 * 5791 5742 3313 * * * * 3651 2884 1983 4227 * * 3075 11 332 * 2283 * * 1024 977 5720 0 3235 P 12 3443 5781 4600 4353 5249 2181 6441 4947 4645 5623 * * 3261 5510 * 4347 6243 2201 4550 * 12 28 * 5704 * * 2505 280 5634 0 3974 E 13 2752 * 4116 2922 * 3510 * * 3427 4656 * 2371 * 5673 4970 4587 3218 4995 * 5943 13 96 * 3952 * * 2156 367 5640 0 3870 K 14 2978 * 4906 2576 * 4113 * * 1884 * * 5824 5172 5304 3553 2692 6052 * 5827 * 14 95 5701 4498 1000 1000 209 2891 5746 1000 3950 R 15 3815 * 3864 4576 * 791 4851 * 4294 * * 3609 * * 5614 5979 4768 * * * 15 50 6598 5380 0 * 2338 318 5840 1000 2523 S 16 3177 5364 2819 5867 * 4187 4393 * 5295 * 5001 3327 * * 6620 1226 * * * 6691 16 26 * 5807 * * 1574 591 5851 0 2729 K 17 2540 * 6105 2776 6361 4739 6288 * 2339 * * * 3991 3714 3521 4822 3564 4231 * 6939 17 77 6766 4558 0 * 810 1219 5869 1000 2889 H 18 3818 * 2638 3367 4572 3896 4977 * 4930 5410 5817 5418 3888 5193 3491 2690 4648 6408 4551 * 18 0 * * * * 173 3143 5924 0 2949 I 19 6106 * * * 2588 * * 1299 * 2090 5098 6553 * * * * * 4302 3858 5758 19 16 * 6462 * * * 0 5979 0 1000 M 20 2082 * * 4789 5275 * * 4472 2924 5135 4734 * 6720 5690 2338 4688 3443 3301 * * 20 17 * 6390 * * 1057 945 6003 0 1485 P 21 * * * * * * * * * 6709 * * 81 * 5823 5810 * 6736 * * 21 0 * * * * 0 * 5910 0 1639 S 22 4599 * 4105 3278 6122 * * 3969 5161 3020 5298 5149 * 4990 5805 3896 2907 2204 * 4392 22 0 * * * * * * 5912 0 0 E 23 3642 * 5863 3065 3628 5312 4002 5647 5255 6135 5141 4884 * 2353 2477 4309 4949 * 5906 5852 23 0 * * * * * * 5912 0 0 I 24 1977 * * * * 6122 * 2885 * 4291 4558 * * * * * 4621 1113 * * 24 0 * * * * * * 5912 0 0 F 25 6769 * * * 1086 * 6497 6119 * * 6453 * * 6571 6637 5091 * * 2384 2052 25 0 * * * * * * 5912 0 0 D 26 * * 271 * * * * * * * * 3598 * * 6594 4018 5905 * * * 26 0 * * * * * * 5912 0 0 D 27 * * 294 * * 6434 * * * * * 2643 * * * 6278 * * * * 27 0 * * * * * * 5912 0 0 G 28 * * 5674 * 6299 175 * * 4821 * * 5979 6278 * * 7085 * * * 6589 28 0 * * * * * * 5912 0 0 T 29 5756 6947 6784 3907 * 6434 5427 4306 2704 5857 6122 7281 * 3609 1630 7497 3206 3826 * 4999 29 0 * * * * * * 5912 0 0 F 30 4902 * * 5621 1203 * 4945 6707 2630 3965 4768 * * 3998 4176 3982 6883 * * 5804 30 0 * * * * * * 5912 0 0 T 31 5195 * * * * * * 5451 * 5454 5332 * * * * * 206 4825 * * 31 0 * * * * * * 5954 0 0 Y 32 * 4181 * * 2421 * 6449 5370 * * 6567 * * * 4915 * 5293 6044 3731 829 32 0 * * * * * * 5954 0 0 F 33 * * * * 1609 * * 2012 * 1665 4584 * * * * * * 4368 * 5731 33 0 * * * * * * 5954 0 0 G 34 * * 6518 3341 5505 3335 7022 5203 2595 5558 5854 6303 * 2182 2647 6934 4480 3742 * 6640 34 0 * * * * * * 5954 0 0 F 35 * * * * 804 * * 4803 * 2618 2617 * * * * * * * 4790 5087 35 87 4537 5995 503 1764 * * 5954 2169 0 K 36 3369 * 3124 5125 * 4422 6458 * 3892 6854 * 5007 1298 7458 4335 3388 4740 * * * 36 108 4209 5773 1349 719 931 1073 5951 2672 1685 N 37 2475 * 3659 3879 * 3620 4008 5345 3268 * * 3057 2685 4315 5350 5361 5254 * * * 37 69 4631 7244 1562 597 1129 882 5910 2208 1497 I 38 4398 * 3435 6587 * 2234 * 6179 4814 6456 5568 1877 5919 4238 4188 3702 3762 6946 * * 38 181 3083 * 903 1104 * 0 5911 3523 1532 T 39 2270 * * 4691 * 3410 * * 2882 7620 6686 4527 6948 2581 3994 3592 3570 4036 * * 39 96 4275 6292 1520 619 1118 891 5911 2975 1532 L 40 4150 * 2344 1611 6461 5634 6645 * 3880 4750 * * 3248 5002 3945 7077 3966 * * * 40 74 4688 6503 1751 509 1066 937 5864 2422 1543 Q 41 3484 * * * 3012 * * 2565 6747 1783 3173 * * 4774 4223 * 7300 3492 6041 7279 41 29 * 5667 * * 0 * 5885 0 1596 P 42 6349 * * * * 6297 * * * * * * 105 * * 4460 * * * * 42 0 * * * * 0 * 5935 0 1202 A 43 1088 * * * * 5520 * 4696 6452 6955 6500 6301 5741 4506 6377 3403 3888 2506 6243 * 43 0 * * * * * * 5954 0 0 I 44 4584 * * * 4187 * * 1382 5796 2684 6489 * 5302 * * * * 1692 * * 44 29 * 5647 * * * * 5954 0 0 F 45 6646 * * * 928 * * * * 3352 6320 * 5672 6509 * 5803 * 5308 * 1835 45 11 7011 * 0 * 0 * 5917 1000 1581 V 46 2441 * * 4279 6922 5777 * 2947 3758 3161 5011 5221 * 5664 3130 * 5201 2461 6128 7044 46 47 * 4973 * * * * 5954 0 0 V 47 5255 * 5935 5793 6436 * * 3687 3946 2903 5621 * 5753 5567 5702 5439 * 952 * 4938 47 159 * 3258 * * 594 1567 5920 0 1898 Q 48 4881 * 1891 5122 * 2805 * 6636 6296 3987 7308 2723 * 4746 4488 3197 3722 6129 * * 48 47 * 4966 * * 0 * 5866 0 3433 P 49 2981 * 3564 3107 * 3617 * 4418 3499 5232 * 5484 2194 6275 5848 4568 4906 3597 * * 49 34 6230 6646 0 * 478 1826 5935 1217 2052 D 50 5338 * 904 4081 * 4080 6662 * 4046 6238 * 4304 * 4497 * 3238 4715 * * * 50 40 5890 6607 0 * 1062 940 5949 1700 1521 G 51 * * 5678 * * 458 * * 3948 6376 * 3445 * 5673 5355 5770 5547 * * * 51 55 * 4730 * * 986 1014 5949 0 1087 K 52 6406 * 5102 2853 * 6306 6475 6543 2250 5926 * 4164 * 2540 3383 3556 3350 6441 * 4598 52 27 6517 6995 0 * 1913 445 5899 1000 2382 L 53 5976 * 3625 933 * 4826 * 6657 4242 3075 6654 5082 6416 6253 5713 * 4828 5567 * 5438 53 55 6227 5381 0 * 950 1052 5878 1000 2382 S 54 2918 * * 3367 5936 5016 6303 5495 5561 5221 6443 4222 6121 3489 4424 2344 3205 3421 6513 5979 54 38 * 5279 * * 993 1007 5869 0 2396 M 55 4654 * * * * 5029 * 3267 * 1126 3509 * 3610 7071 5061 4680 3956 4133 * * 55 25 * 5878 * * 1024 977 5870 0 2424 T 56 3355 5317 * 6632 * * * 3903 * 2995 * * 3890 5028 * * 3875 976 * * 56 82 * 4175 * * 1608 573 5826 0 2005 D 57 6130 6338 4586 2973 * 5875 * * 5269 * * 609 4771 5276 5019 * 6306 * * * 57 33 * 5469 * * * 0 5786 0 2986 A 58 3981 * * * 3131 5356 4994 5936 5012 7293 4826 * 6253 5195 5652 2810 2286 4007 6706 2336 58 0 * * * * 2938 202 5758 0 3255 A 59 4037 * 5545 5487 * 6900 2770 4124 4984 4789 6275 3671 * 4650 1740 5061 3146 5054 * 6429 59 0 * * * * 2594 261 5807 0 3159 I 60 6136 * * * 6729 * * 2481 6449 3471 3769 5249 5481 4403 3499 * 3898 1554 * 5047 60 54 * 4779 * * * 0 5802 0 3089 D 61 4873 * 3202 2360 * * 6289 4515 3270 3367 * 3522 6190 4220 2795 * 5215 3646 * * 61 51 * 4848 * * 2223 348 5794 0 3538 P 62 5014 * 4007 4738 6241 1013 5345 6698 3989 * * 4469 3332 5495 5614 4255 5387 * * * 62 168 * 3189 * * * 0 5794 0 3582 N 63 * * 2213 4056 5412 3163 5260 * * * * 1487 * 3993 4869 3429 5948 * * * 63 500 * 1772 * * 2221 348 5712 0 4410 M 64 * * 4648 5748 4358 3205 5545 3773 4162 6216 3784 * 5582 5059 4441 * 3675 4092 * 1671 64 928 * 1076 * * 2985 195 5692 0 4818 T 65 3280 * 5210 5046 * 4696 * 4978 3239 * 3474 * 3172 5505 4583 3852 3754 2242 4504 * 65 410 * 2017 * * 4689 57 5160 0 5192 N 66 * * 3780 * * * 4263 * 3068 4570 * 3225 * 2065 2630 4932 * 4564 4775 3401 66 151 * 3335 * * 4217 80 4939 0 5208 S 67 * * 2170 3658 4405 2158 * 4617 4358 * * * 3307 4204 3700 3244 * * * * 67 50 * 4880 * * 3412 142 4775 0 5190 G 68 5242 * 1854 4565 4893 2383 * 4303 4980 * * 1948 * * * 4219 4874 * * * 68 102 3871 * 0 * 5111 42 4832 1395 5041 L 69 * * 4645 * 4664 2701 * * * 3078 * 2743 2362 4374 3154 * * * * 2796 69 50 * 4863 * * 2312 324 4925 0 5169 R 70 5114 * 2840 4059 5030 * * * 3446 3839 * 3181 2643 4771 2884 * 3163 * * 5309 70 0 * * * * 1289 759 5275 0 4774 W 71 * * * * 6449 * * 3111 5822 4102 5981 6020 * * * * 2036 1899 4612 2232 71 34 * 5410 * * 453 1893 5681 0 4370 Y 72 * * * 5534 3944 * * 1754 * 2100 3490 * * * * * * 2364 * 3314 72 18 6306 * 2000 415 286 2474 5840 1000 3163 R 73 5721 * * 6532 * * * 1959 5040 6830 5239 * * 6554 4212 * 4538 890 * * 73 0 * * * * * 0 5914 0 1000 V 74 3928 * * * * * * 1867 * 4558 * * * 5596 * * * 774 * 6379 74 0 * * * * * 0 5914 0 1000 N 75 * * 2166 2567 * * 2122 * 5318 6769 * 5358 3805 2494 * 5853 5292 5947 * 6379 75 0 * * * * * 0 5914 0 1000 E 76 4309 * 3822 3317 * 2261 * * 3364 6384 * 6340 5947 3321 2335 4312 3763 * * 6670 76 17 * 6392 * * 0 * 5914 0 1000 I 77 5769 * * * * * * 3302 * 2567 5226 6669 * * 6549 * 2436 1060 * * 77 0 * * * * 0 * 5967 0 1000 A 78 1852 * * 5895 3641 5099 3802 5058 * 5888 * 3488 3874 * 6513 2453 4435 4350 * 4967 78 0 * * * * * * 5921 0 0 E 79 4070 * 3063 3433 * 4898 6156 * 2775 * * 4088 2183 4923 2824 4791 7061 * * 4730 79 0 * * * * * * 5921 0 0 K 80 3912 * * 2592 5888 4428 5361 6906 1988 3923 * 4484 * 3104 2886 * 5263 6401 * 5672 80 0 * * * * * * 5921 0 0 F 81 3241 * * * 1827 5985 * 3465 * 1928 6832 * * * * * 6595 5263 2595 4941 81 0 * * * * * * 5921 0 0 K 82 6355 * * 5177 5406 * 5498 4582 4829 3131 5642 5667 * 6230 3398 7458 2341 1635 * 4307 82 0 * * * * * * 5921 0 0 L 83 6386 * * * 4589 * * 2884 * 400 4626 * * * * * * 6288 * * 83 18 * 6310 * * * * 5921 0 0 I 84 * * 6417 6263 * * * 4622 2714 * * * * 4764 534 * 4981 5430 * * 84 0 * * * * * 0 5852 0 1000 K 85 4860 * 5625 * 5490 * 5389 3486 4189 1714 4489 5736 * 5808 3133 2975 * 5682 * 3204 85 0 * * * * * 0 5852 0 1000 D 86 4983 * 4490 5429 * 243 * * 4608 * * 6108 * * * * * * * * 86 18 6317 * 2000 415 * 0 5852 1000 1000 K 87 * * 1953 3852 * 4370 6430 * 2097 * 5605 2526 * 3845 5307 4305 4670 * * * 87 33 5473 * 1261 779 * 0 5939 1619 1000 A 88 3330 * 3206 2399 6671 5664 * * 2645 3275 * 6718 * 3884 3981 2832 5111 * * * 88 27 5753 * 950 1051 0 * 5859 1331 1000 L 89 4506 * * 2627 6004 * 5508 5616 * 5110 * * * 5299 * 3847 3987 1034 * 4040 89 0 * * * * * * 5867 0 0 V 90 2910 * * * * 5452 * 3471 * 2782 5998 * * * * * 4644 855 * * 90 19 6258 * 2322 322 * * 5838 1000 0 T 91 4626 2062 6510 3374 * 2146 * 6418 4149 * * * * 5386 2883 4272 3857 5328 * 6200 91 0 * * * * * * 5838 0 0 V 92 5530 * * * 6426 * * 932 * 3979 * * * * * * * 1399 * * 92 26 5819 * 2322 322 * * 5833 1000 0 I 93 4861 * 6867 2657 2481 * * 2683 4108 6056 * * * 4392 4711 * 4108 2819 6727 3389 93 0 * * * * * * 5732 0 0 N 94 * * 5022 * * * 6169 * 6172 * * 453 * 5814 3160 * 6557 * * 3825 94 34 * 5405 * * * * 5671 0 0 K 95 3922 * 4080 2443 * 4169 * * 2674 5862 * 2916 * 3980 2300 * 4365 6151 * * 95 0 * * * * 0 * 5539 0 1000 G 96 3359 * 5542 4569 * 1150 5531 * 4864 * * 4612 5604 * 5910 1974 * * * * 96 39 5240 * 0 * * * 5443 1000 0 Y 97 3948 * * * 1261 * * * 4795 3935 * * * * * * * * 5253 1358 97 30 5612 * 1585 585 * * 5125 1000 0 G 98 3921 * 2607 * * 1163 * 4511 5236 * * 2462 * * 5354 5731 * 5151 * * 98 0 * * * * * * 4963 0 0 K 99 5020 * * 4341 4592 * * 5348 1639 5123 * * 1645 4189 2949 * * * * * 99 0 * * * * * * 5004 0 0 N 100 * * 3142 3904 * * 4867 3828 4644 * * 1859 4130 * 3999 3461 2772 4550 * * 100 0 * * * * * * 4665 0 0 P 101 * * * * * 997 * * * * * * 1003 * * * * * * * 101 0 * * * * * * 4501 0 0 L 102 4018 * * * * 4332 * 3229 * 1626 * * * * * * 2817 1661 * * 102 0 * * * * * * 3863 0 0 T 103 * * * * * * * * * * * * * * * * 0 * * * 103 0 * * 0 * * * 3205 0 0 //