HHsearch 1.5 NAME c5frhA_ FAM FILE c5frhA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5frhA_.a3m DATE Thu Feb 9 12:05:26 2017 LENG 108 match states, 108 columns in multiple alignment FILT 117 out of 422 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4119 -1.4988 SEQ >ss_dssp CCSCCCCCCCCSCCHHHHHHHHHHHHTTCSSTTHHHHHHHHHHTGGGTTTTTCHHHHHHHHHHTTTTTCCCSTTHHHHHHHHHHHTTCCCCCCGGGGGSC CSSCSSCC >sa_dssp EEEEEEEDDECEDBEEBADCADDBADEDECDDAAEDADEDAEEBCCAADCCCACDCADCACDACEEEECCDCDCCDCABDBCDCBEEDEEDCDCBEDCED DDEDEEEE >ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC CCCCCCCC >ss_conf 9888877867799899999989976788788999999999960899999999999999999853056685834899999984121100356643212279 99988779 >Consensus xxxxxxxxxxxxxCxexxxxlxxxlDgeLxxxxxxxvexHLxxCxxCxxexxxxxxxxxxLxxxxxxxxaPxxLxxrIxaxixxxxxxxaxxxxxxxxxr sxxxpxxx >c5frhA_ GSHMSAGEPHETDCSEILDHLYEFLDKEMPDSDAVKFEHHFEESSPCLEKYGLEQAVKKLVKRAAGQDDVPGDLRAKVMGRLDLIRSGQSVPEHDVAAAP SSSAPQES >UniRef50_A5UU48(8-104:318) Putative transmembrane anti-sigma factor n=2 Tax=Roseiflexus RepID=A5UU48_ROSS1 E=1e-13 s/c=0.80 id=19% cov=87% -----------SNCDEILELVPAFVLGALDADEAARVAAHITNCPRCRAEAESFRDVVGLLPYASGALTPPPrvkrQLFARIAAAHDDASTETAPASRPM AMPRSTRP---- >UniRef50_Q1D379(18-100:127) Putative uncharacterized protein n=2 Tax=Cystobacterineae RepID=Q1D379_MYXXD E=0.001 s/c=0.54 id=21% cov=56% -------------------------DDELPAPKAQEVRTHLDGCDDCRQGWQRYSSTVQRLQR-VEREKAPPALASLVMNRVRRKR-------------- -------- >UniRef50_Q65P50(1-82:206) Anti-sigma-W factor rsiW n=20 Tax=Bacillaceae RepID=RSIW_BACLD E=3e-11 s/c=0.85 id=20% cov=75% ---MSCPEH-------IVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALV-QSTSHLTAPANFTANVLANLPKEKRTASI--------- -------- >UniRef50_A9ESI2(22-113:241) Putative uncharacterized protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESI2_SORC5 E=2e-09 s/c=0.69 id=18% cov=81% -------------------ELMLYADGELDEARHRQVEEYVLHDPRCRAKVAALVTAADMVRDSALASSAADGIADAVMAKILEGQAGAARVDgggaaRP LAAPPSGEPP--- >UniRef50_B5RYT2(4-96:276) Cog5662, predicted transmembrane transcriptional regulator (Anti-sigma factor) protein n=3 Tax=Ralstonia solanacearum RepID=B5RYT2_RALSO E=2e-06 s/c=0.58 id=17% cov=83% -------------CDDVRALLTARADGELGAADSLRIESHLatcaACAAMAARHDRVARALRQGLRAPALYAAAPQGLAGRILQAVQAEAMQSAVPAARR RVPPRS------ >UniRef50_A3TGS1(12-100:190) RNA polymerase sigma-70 factor n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGS1_9MICO E=2e-05 s/c=0.57 id=17% cov=81% -----------------LDELPDYVSGQLSLQRTLDWDRHLIMCVNCQHAVAGERRLQTLLASGCP--SMPGSLHAQLVAlasSMTGPAMAQTSERAPLE MVPPSAPP--- >UniRef50_Q2P1G7(46-130:253) Putative uncharacterized protein XOO2855 n=9 Tax=Xanthomonas RepID=Q2P1G7_XANOM E=9e-07 s/c=0.64 id=13% cov=51% ------------------------------EEENTWLIAHVAKCASCGAEFAQQNRLRQALALPSAVKLDPNAGLQRLLGRLDA---------------- -------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2404 0 0 S 2 * * * * * * * * * * * 2310 * * * 736 2338 * * * 2 0 * * * * * * 2685 0 0 H 3 * * * * * * 1320 * 2310 * * * 2338 * * 2321 * * * * 3 0 * * * * * * 2685 0 0 M 4 * * 3640 3568 * 3516 * * * 3444 608 * * * * * * * * * 4 0 * * * * * * 4080 0 0 S 5 * * * * * 3568 3640 * 3596 * * * 3444 * * 834 3321 * * * 5 175 * 3132 * * * * 4080 0 0 A 6 3393 1777 * * * 1964 * * * * * * * 2437 3560 * 3520 * * * 6 0 * * * * * 0 3957 0 1000 G 7 * * 2464 2532 * 1871 * * * * * * 2397 * * 2453 * * * * 7 138 3459 * 2322 322 0 * 3957 1000 1000 E 8 3719 * 2987 791 * * * * * * * 3883 * * 3807 3628 * * * * 8 0 * * * * * * 4439 0 0 P 9 3637 4178 * 3861 * 3985 2692 * * * * * 1282 4225 * 4099 * 4193 * * 9 109 * 3776 * * * * 4811 0 0 H 10 * 3847 4460 3293 * 2340 1926 * * * * 3059 * 4162 4063 3526 * * * * 10 74 * 4312 * * * 0 5469 0 1000 E 11 3138 * 2657 2764 4501 2449 4199 * 4642 * * * * 2944 * 3502 4620 * * * 11 0 * * * * 902 1106 5461 0 1615 T 12 * 2605 * 3808 * * * * 4548 4422 3262 3779 3109 * 4521 3085 3149 3216 * * 12 0 * * * * * 0 5771 0 1000 D 13 4651 5003 1710 3002 * 3992 * * * * * 2327 * * * 2569 3880 * * * 13 0 * * * * * 0 6460 0 1000 C 14 * 84 * * * * * * * * * * * * 4137 * * * * * 14 0 * * * * * 0 6591 0 1000 S 15 3499 * 2934 2706 * 6388 5006 5727 3273 5551 * 3710 6143 3124 3440 3140 6065 * * 6065 15 0 * * * * * 0 6638 0 1000 E 16 * * 2391 1079 6372 6305 * * 3482 5271 * * * 3581 6379 6386 5621 4235 6076 * 16 0 * * * * 0 * 6642 0 1000 I 17 2434 5777 * 5775 3232 * * 2801 * 4121 5572 * 5486 6547 * 3885 5629 1914 4923 5022 17 0 * * * * * * 6648 0 0 L 18 5268 * 6113 3706 5450 * 5099 3280 4349 2603 5805 5814 * 3049 2489 5279 4336 3529 * 5816 18 0 * * * * * * 6710 0 0 D 19 3705 5774 2410 2383 * 5245 6031 5216 3427 5906 * 4303 3295 3438 4692 4627 5438 * * * 19 15 6642 * 2000 415 * * 6965 1000 0 H 20 3753 * 6351 2891 4440 * 3196 5128 5504 1797 5618 4655 5924 4889 3313 5790 * * * 4154 20 20 6206 * 2322 322 * * 6983 1000 0 L 21 5339 * * * 5684 * 6242 2208 * 992 3513 * * * * * * 3274 * 4950 21 24 * 5927 * * * * 6979 0 0 Y 22 4673 6711 4929 3840 4322 * 3710 6206 * 4657 3364 4319 4056 4732 5842 2271 4138 5207 6749 3235 22 0 * * * * * 0 6950 0 1000 E 23 2012 * 2900 2325 6586 4461 7159 * 5396 2621 * * 4164 5424 6365 4598 5181 * * 6735 23 13 * 6824 * * * 0 6861 0 1000 F 24 4785 * * * 2413 * 4829 5140 6174 2548 * 6075 * * 4428 5830 * 5973 6811 1238 24 0 * * * * 898 1110 6589 0 1595 L 25 3085 * * * 4396 * 6230 3169 * 1139 4131 * * * * * 5360 2518 * * 25 0 * * * * 0 * 6624 0 1000 D 26 5090 * 439 4499 * 6216 6670 6195 * 4704 * 4893 * * 6009 4965 5600 * * 6423 26 0 * * * * * * 6621 0 0 K 27 6549 5963 4531 4117 * 860 3817 * 4644 * * 3189 * 5217 4378 5271 * * * * 27 0 * * * * * * 6612 0 0 E 28 4113 * 4390 701 * * * 6452 * 5436 6476 4759 5922 4645 5096 4545 4418 5553 * * 28 0 * * * * * * 6695 0 0 M 29 4577 4512 * 6045 * * * 4815 6647 570 3375 * * * 6063 * 4497 5361 * * 29 22 6045 * 4000 93 * * 7024 1000 0 P 30 4879 * 2059 3052 * 4774 * * 6562 5316 * 4612 3043 5008 * 2455 2666 * * * 30 10 7219 * 0 * * * 7113 1000 0 D 31 2604 * 3022 2385 6302 3823 5005 6106 4516 5179 * * 2246 5890 5852 5991 5048 5528 * 6956 31 10 * 7218 * * * * 7234 0 0 S 32 2447 * 4077 1935 * 4353 5673 5608 5510 5029 6302 6175 3774 4416 4027 3716 5702 4290 * * 32 0 * * * * * 0 7236 0 1000 D 33 3634 * 2274 1988 * 6976 4885 6549 4420 4489 5590 6875 * 3510 3101 5254 4378 6799 * * 33 0 * * * * * 0 7236 0 1000 A 34 2404 4643 5495 4849 6610 6398 3851 6762 3834 4269 4786 5740 * 3977 2376 4230 3858 4800 * 5485 34 0 * * * * 0 * 7236 0 1000 V 35 2309 * 4430 2539 * 7236 5475 5311 5022 2898 5414 6597 6043 4036 3118 4185 4242 5179 * * 35 9 * 7382 * * * * 7234 0 0 K 36 2429 6107 4518 2605 * 6639 * 4747 4021 4352 * 6799 * 3869 1996 4364 6287 5683 6628 6063 36 0 * * * * * 0 7237 0 1000 F 37 4966 6231 * * 2614 * * 2691 * 2020 3564 * * * * * * 1792 5915 * 37 0 * * * * * 0 7237 0 1000 E 38 3680 * 4042 1528 * * 5826 4949 3446 4686 6065 6398 * 3144 2891 4530 7032 6921 * * 38 0 * * * * * 0 7237 0 1000 H 39 1991 6435 3631 2664 * 5600 4158 6011 3834 5713 5554 * * 3808 2967 3828 5919 6719 * * 39 0 * * * * 0 * 7237 0 1000 H 40 4759 * 6488 5875 6629 * 281 * * * * 5792 * 6268 4060 * * * * 6513 40 0 * * * * * * 7234 0 0 F 41 6319 * * * 6128 * * 2604 * 597 5533 * * * * * 6328 3136 * * 41 48 4921 * 1455 655 * * 7234 1713 0 E 42 1984 * 3267 2416 * 5202 7289 5917 4129 4130 6035 5454 * 4123 3935 4710 5258 4130 * 6738 42 0 * * * * * * 7234 0 0 E 43 3453 5438 3516 3919 * 3621 3941 6843 5514 5785 4725 4216 * 3225 4124 3271 3197 4213 * 6111 43 0 * * * * * * 7234 0 0 S 44 5438 249 4695 6027 6303 * * * * * * 4889 * * * 4832 * * * * 44 0 * * * * * * 7234 0 0 S 45 2618 * 3732 3318 * 4591 7234 6043 4409 * 6445 6241 1617 5792 5613 3239 5836 4699 * * 45 0 * * * * * * 7234 0 0 P 46 2910 * 3055 2710 5557 4682 4808 * 4869 4989 5438 5033 3344 6784 3578 2943 5444 5236 * 7005 46 0 * * * * * * 7234 0 0 C 47 4783 231 * * * * * * * 3983 * * * * * * * 5903 * 4971 47 0 * * * * * * 7234 0 0 L 48 2585 * * * 4103 5489 6214 5322 4415 3744 5961 6146 * 2619 1866 3950 4974 5917 * 6308 48 0 * * * * * * 7370 0 0 E 49 2092 * 4218 1952 * 6950 4739 6349 5103 5413 * 5047 * 3393 3065 3997 5177 7026 * * 49 16 * 6546 * * * * 7370 0 0 K 50 3358 * 4934 1417 5269 5850 4561 6531 4999 3604 6017 * * 3978 3601 * 6143 4210 5727 4759 50 0 * * * * * 0 7341 0 1000 Y 51 4002 * 5696 * 3880 * 5536 5924 6862 1870 4582 * * 7045 6048 4932 7179 2593 4440 2222 51 11 * 6985 * * * 0 7334 0 1000 G 52 2306 7045 2702 2140 * 4299 4274 6143 4728 4248 * 6317 * 5136 3596 5045 5022 6706 * 6889 52 0 * * * * 0 * 7339 0 1688 L 53 3011 * 4269 3187 3916 4916 6905 3893 4599 3774 5800 5023 * 3175 2838 3732 * 4686 6435 * 53 0 * * * * * * 7337 0 0 E 54 3793 * 5306 2130 4190 * * 5910 * 1854 4298 6379 * 3059 6649 6486 6600 4345 5187 4831 54 0 * * * * * * 7337 0 0 Q 55 4736 * 6756 2669 * 5380 5511 * 3163 4273 6462 5366 * 2624 1843 4592 5525 4412 * * 55 0 * * * * * * 7333 0 0 A 56 2146 * 4898 2456 * 5353 4174 * 5175 4368 5930 7031 5462 3517 2850 4808 3613 6380 * * 56 24 * 5941 * * * * 7333 0 0 V 57 3381 6791 5151 7128 7102 * * 2925 * 1973 6042 6055 6134 * * 5591 3017 1912 * 6430 57 0 * * * * 0 * 7281 0 1000 K 58 3192 7302 4338 * 5680 5454 5996 4103 2229 4646 * * * 4753 1975 3564 5058 4387 6420 * 58 0 * * * * * * 7333 0 0 K 59 2421 * 4301 3165 6235 3200 6516 5946 4352 4553 4637 5689 * 3300 3563 3774 3735 5940 * * 59 0 * * * * * * 7326 0 0 L 60 2253 * 6947 6646 6475 4873 4654 4038 6506 1519 5893 6816 * 6945 3874 6074 4809 3461 6556 6343 60 0 * * * * * * 7326 0 0 V 61 * * * * 6207 * * 3316 * 675 3754 * * * * * * 2429 * * 61 133 * 3502 * * * * 7325 0 0 K 62 2246 * 4869 6420 6188 4402 5499 * 2853 4468 * 5390 4166 3556 2197 4352 5649 5321 * * 62 119 * 3662 * * 624 1510 7282 0 3715 R 63 3402 * 4394 3556 4940 5276 4516 * 4693 4087 5475 4509 5711 3296 2050 3648 5613 5914 6953 5670 63 149 4195 4532 1205 821 466 1856 7290 2669 4336 A 64 2443 3357 4303 4950 * 4526 5970 6963 4025 3636 * * 4806 * 3501 2100 4161 * 6273 * 64 25 7295 6562 2000 415 455 1885 7301 1000 3549 A 65 2164 2235 6752 5491 5284 4526 * 6742 5347 2644 4672 5488 5246 * 6915 3550 5357 4254 * 6428 65 80 6463 4563 1000 1000 541 1676 7295 1000 2257 G 66 2852 * 4176 2851 6342 2794 6243 6395 4236 4038 * * 2956 4700 4385 3654 4955 4472 * * 66 116 * 3696 * * 304 2398 7290 0 2843 Q 67 2914 4909 4556 3099 * 3907 4459 4708 4588 4889 * 5857 4665 3227 3278 6136 3930 4238 * 4330 67 65 * 4513 * * 213 2864 7284 0 3625 D 68 4147 * 3512 2222 5506 6641 4832 4805 4068 4058 6778 5798 3975 4292 4186 5149 * 2787 4663 6679 68 48 6570 5490 0 * 261 2596 7247 1000 3134 D 69 3355 5177 3460 3877 * * 5684 6509 4007 5562 * 6165 2398 3937 3598 3167 2847 * * * 69 35 6666 6165 0 * 552 1654 7264 1000 2206 V 70 919 5727 5760 * * 5641 * * 6315 5492 3562 * 2617 * * * * 2931 * * 70 24 5932 * 1081 923 818 1208 7255 1561 1543 P 71 5898 * * 5828 * * * * * 5822 * * 200 * 6586 3900 * * * * 71 49 5573 6326 2945 201 0 * 7277 1715 1000 G 72 2097 * 2850 2498 * 3838 * * 4727 * 6522 5777 2768 4715 5175 4591 4808 5380 * * 72 71 5075 5745 2293 329 0 * 7306 2151 1000 D 73 2980 * 2539 2913 * 2723 3806 * * * * 5279 6738 4420 3961 2889 4263 6341 * * 73 0 * * * * 984 1016 7322 0 1669 L 74 5266 * * * 3158 5783 * 5896 * 477 4744 * * * * 6690 * 4021 * * 74 0 * * * * * 0 7327 0 1000 R 75 2931 6657 * 5299 5326 * 4481 5306 3155 4126 5267 5007 4258 5395 1594 * 3872 4785 * * 75 0 * * * * * 0 7327 0 1000 A 76 1534 * 3275 2529 * 4738 6907 * 7088 5047 6410 6487 6387 3815 4466 3426 4917 5833 * * 76 0 * * * * 0 * 7327 0 1000 K 77 3901 * 5661 6337 * 6680 * * 3407 5058 * 4747 * 3551 887 4238 4306 * * * 77 22 * 6043 * * * * 7327 0 0 V 78 6353 * * * * * * 1348 * 2087 * * * * * * 6510 1596 * 5818 78 32 6308 6772 0 * * 0 7278 1000 1000 M 79 4088 * 5841 6599 6506 * 5463 5165 3483 1908 2213 * * 5057 2555 6592 6093 4182 * * 79 25 * 5866 * * 800 1232 7186 0 1571 G 80 1373 * 5529 4525 6179 3043 5803 * 4303 4739 5975 5408 * 4669 3840 3298 6615 4408 * * 80 60 5004 6657 1784 495 1447 659 7169 1710 2142 R 81 2483 * 6639 4248 * 4581 * 5939 3524 6519 5154 4414 * 3160 1783 3338 5976 6607 * * 81 0 * * * * 1430 669 7117 0 2063 L 82 4577 5981 * * 6084 * 6439 1464 * 1383 4257 * * * * * 5111 3491 * * 82 76 6218 4712 0 * * 0 7113 1000 1546 D 83 3021 * 2649 3829 6257 4641 5047 5471 6178 4633 * 5108 3257 4886 3344 4261 2566 * * * 83 29 6468 6840 1585 585 1923 442 7097 1000 2664 L 84 2499 * 6160 3641 5837 4287 * * 4908 3278 5260 4223 5115 2537 4064 4128 3492 4752 * * 84 16 * 6490 * * 1825 479 7102 0 2487 I 85 4632 * 6119 2100 * 3896 * 3056 5889 4094 4501 6165 4813 4238 4401 4739 4747 2470 * * 85 20 6196 * 0 * 870 1143 7062 1000 2459 R 86 3566 * 3822 4089 * 6046 * * 4253 4142 5994 * 3631 3056 1764 3501 5709 4528 * * 86 59 5710 5566 1585 585 1115 893 7124 1000 1506 S 87 3370 * 5165 2654 4828 5970 5447 4587 5868 5915 4359 * 5007 3195 4231 2759 3836 3223 * * 87 0 * * * * 933 1070 7077 0 1667 G 88 2652 * * 1739 6041 2752 * 6235 4673 5048 * * 5277 4156 4907 4875 2780 * * * 88 45 5032 * 1998 416 0 * 7105 1559 1000 Q 89 2637 * * 3871 * 4862 5956 4993 * * * 4442 4204 2471 3864 2850 3031 3670 * * 89 0 * * * * * * 6967 0 0 S 90 1420 * 5011 5411 * 5987 * * 5743 * * * 3982 4744 5699 1982 3509 3709 * * 90 25 * 5841 * * * * 6978 0 0 V 91 3169 * * 5416 * 4613 * 3793 * 2945 * * 4325 * 2757 2927 3527 2277 * * 91 25 * 5865 * * * 0 6987 0 1000 P 92 2841 * 6056 3385 * * * 5564 4353 4673 * 5381 2346 4944 2200 4560 6644 3092 * * 92 0 * * * * * 0 6874 0 1494 E 93 3258 * 1927 2030 * 4753 5179 * 5181 * * * 4421 3760 3483 4744 * 4379 * * 93 138 3455 * 1465 649 906 1101 6658 2227 1494 H 94 3791 * 4470 1948 * * 4090 * * * * * * 3139 2767 3156 2638 4993 * * 94 0 * * * * * 0 6534 0 1000 D 95 5033 * 3437 2662 * 4841 4849 * * * * 4931 1975 4929 3559 5230 2452 4826 * * 95 56 * 4716 * * * 0 6520 0 1000 V 96 2518 * * * * * * 3960 4928 2328 4935 * * 5102 3269 * * 1460 * * 96 0 * * * * * 0 6398 0 2066 A 97 2450 * * 3325 * 4599 5191 4765 * 5166 * * * 3509 2177 3403 * 2803 4753 * 97 41 * 5149 * * 510 1748 6248 0 2066 A 98 2471 * 3053 4180 * 5439 * 2637 5140 5155 3322 4979 4763 * * 5394 * 2243 * * 98 0 * * * * * 0 6284 0 1499 A 99 3205 * * 3191 * * * * 5140 4180 * * 2314 3701 3415 3385 2601 3914 * * 99 0 * * * * 0 * 6284 0 1499 P 100 5369 * * * * * * * * * * * 1401 3922 1082 * 4086 * * * 100 0 * * * * * * 6343 0 0 S 101 3359 * * 5032 * * * * 4583 * * * 3121 * 3708 1678 1616 * * * 101 0 * * * * * * 6258 0 0 S 102 4364 * 4643 * * 1531 * * 4929 * * 5166 * 4551 * 2327 2104 5048 * * 102 0 * * * * * * 5840 0 0 S 103 2626 * 4134 2385 * * 3810 * * * * * 3589 * 1883 3138 4308 * * * 103 0 * * * * * * 5520 0 0 A 104 1961 * * * * 4126 * * * * * * 872 * 3958 3735 * * * * 104 0 * * * * * * 5376 0 0 P 105 * * 3715 * * * * * * * * * 198 * * * 4258 * * * 105 0 * * * * * * 4756 0 0 Q 106 * * * 3455 * * * * 2765 * * * * 687 * * * 2831 * * 106 0 * * * * * * 3718 0 0 E 107 * * 3054 1452 * * * * * * * * * 2455 2791 2418 * * * * 107 0 * * * * * * 3227 0 0 S 108 2523 * * * * * * * * * * * * * * 276 * * * * 108 0 * * 0 * * * 3014 0 0 //