HHsearch 1.5 NAME c5fj9P_ FAM FILE c5fj9P_ COM /bmm/www/servers/phyre2/HH/hhmake -i c5fj9P_.a3m DATE Sat Nov 28 08:20:09 2015 LENG 98 match states, 98 columns in multiple alignment FILT 48 out of 52 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.3719 -1.4326 SEQ >ss_dssp CCSTTSSTTTTTSSTTTTCCCCSSSHHHHHHHSCTTTCCCSGGGTTHHHHHTTSSSSSEEETTTEEECCTHHHHHCCCCCCSCCCCSSCCCCCSSSCC >sa_dssp EEEEEEDDEDDCEECCEECEBEDBDDBAEDBCEDEEEECEEEECBECCBEEDCEECBBCDCEEDBBDDEDBEDEEEEDEEEEEEEEEEEEEEEEEEEE >ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCCCCEECCCCCCCCCCEECCCC >ss_conf 95699999999999997689999999999986597410159999999999971086323631784311012723359820016898785501113689 >Consensus DxeFIxxLxxxcxxfixxxxxTxxeIxxfIxxxxixxvxLxxedixxilxxLvyDgxIExvxxxxyRxxxxxPCgxCPvxxxCxxggxpxxCxYxxxW >c5fj9P_ DIEFINSLLTIVWRFISENYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHDCYRVTLESILQMFNYFKMFPASKHDKEVVYFDEW >UniRef50_O94553(168-299:301) Probable DNA-directed RNA polymerase III subunit rpc6 n=1 Tax=Schizosaccharomyces pombe RepID=RPC6_SCHPO E=3e-21 s/c=0.78 id=29% cov=101% DVEFIENLKKVIYRYVHSKsfppkkaamgpdlvwgpeyngYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKVEKRSDGaSYRAIrvnnenida fTESPCGNCPVSDICDANSrvNPITCEYLDKW >UniRef50_C5LF80(164-285:438) DNA-directed RNA polymerases iii 39 Kd polypeptide, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LF80_9ALVE E=1e-16 s/c=0.71 id=16% cov=101% DTDLIERLRQCCLDYItnQNRAVTCEDVHRYVVSQGVSHITHSVEEIGDVLRSLELDRVImvvpstagESIAKQCYvsRPANLGldyitrivdvPCIACP VSSECVVGGrvNPEECLYLSKW >UniRef50_B4FTK6(131-252:257) Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FTK6_MAIZE E=6e-15 s/c=0.67 id=22% cov=81% -------------------AATAQMIHQGILKED-PRAGYTIDKVRDIIKTMVLDKVLEEVKSTgagdfsavragtmCYRLVTGApqggmmegiPCGVCP RIHECSPEGiiSPSTCVYYKKW >UniRef50_D1ISU0(198-323:493) Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) n=9 Tax=rosids RepID=D1ISU0_VITVI E=2e-13 s/c=0.61 id=24% cov=63% DTEYIKILKETCVKVLSKlKVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEV------------------------------------- >UniRef50_A2E408(172-280:285) RNA polymerase Rpc34 subunit family protein n=1 Tax=Trichomonas vaginalis RepID=A2E408_TRIVA E=3e-13 s/c=0.70 id=14% cov=79% ---------------------TVKDMIEKIKLNTLAAAHITDKEAEQVITAMVHSKRVIKTSGAMLRpgilevppcPISEVPCCGCPVFTQCYPGGPinP RSCPYLQK- >UniRef50_A0CNS2(92-201:201) Chromosome undetermined scaffold_22, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CNS2_PARTE E=1e-12 s/c=0.67 id=18% cov=97% DDELIERIKQKLIYFMQQQcdgRASLDEIRRVYKAQQ--SEHYDEMDFDRIVNLLKYDSILIEEENSFFKlnpfrqqkfqfYLSYLPCQTCPVFNQCKPG NtiSPEKCVF--EW >UniRef50_B0EQZ2(24-138:151) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0EQZ2_ENTDI E=3e-09 s/c=0.55 id=27% cov=56% DADFVTTLSDHIFMFlLNKGGATVIETYDYVRESGISNVDIKKEEILSLLERLVY-------------------------------------------- >UniRef50_Q5CWL5(181-307:319) RNA polymerase III C34 subunit; rpc34p ortholog n=4 Tax=Cryptosporidium RepID=Q5CWL5_CRYPV E=1e-08 s/c=0.48 id=29% cov=66% DMAFVDSIKEKIISFIDSKRKcTLQEILEFINydmnmDSSSARKNISLSDLQSVINMLIVELKIICVKGG------------------------------ ---- >UniRef50_A7ASE8(177-291:293) RNA polymerase rpc34 subunit containing protein n=1 Tax=Babesia bovis RepID=A7ASE8_BABBO E=8e-11 s/c=0.59 id=13% cov=81% --------------------SSLSQITNFLKTSDKISGEVLEEDVLSIIQILILEEKVYSapTASGDSIYIWAGsanvnfaskafgaPCFKCDVAMSCHL GKEnelcPSKCTYLNQW # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 211 3458 * * * * * * * 4480 * * * * * * * * 1 0 * * * * * * 4847 0 0 I 2 3087 * 4255 * * 4906 4727 4587 * 4812 4379 * * * * 2010 1943 2997 * * 2 0 * * * * * * 4847 0 0 E 3 4379 * 3806 550 * 4698 * * * * * * * 3546 * 4812 * 4727 * * 3 0 * * * * * * 4847 0 0 F 4 * 4754 * * 423 * * * * 2553 * * * * * * * * * 4426 4 0 * * * * * * 4847 0 0 I 5 * * * * * * * 757 * * * * * * * * * 1293 * * 5 0 * * * * * * 4847 0 0 N 6 4754 * 1386 2058 * * 4698 * 4426 * * 2620 * 5285 * 4823 4989 * * * 6 0 * * * * * * 4847 0 0 S 7 * * * 4698 * * * 2802 4480 4873 * 3285 * 5049 2950 3002 2262 2799 * * 7 0 * * * * * * 4847 0 0 L 8 * * * * * * * 2863 * 377 4906 * * * * * * 4085 * * 8 0 * * * * * * 4847 0 0 L 9 4258 * * * * * * 4912 2016 2800 4812 3994 * * 2281 3214 4214 4106 * * 9 0 * * * * * * 4847 0 0 T 10 * * 3930 1743 * * 4258 5039 3845 * 4698 * * 2444 4906 3496 2846 * * * 10 0 * * * * * * 4847 0 0 I 11 2949 4644 * 4480 3879 * 4066 2253 3316 * * * * 3138 * * 4426 2414 * * 11 0 * * * * * * 4847 0 0 V 12 * 909 * * * * * 2129 * 4255 * * * * * 5147 4480 3139 * * 12 0 * * * * * * 4847 0 0 W 13 * * * 4077 3148 4912 * 2485 * 2252 * * * * * * * 3340 2938 2498 13 0 * * * * * * 4847 0 0 R 14 4258 * 4644 4727 * * 4873 * 2075 4754 4989 * * 3959 1959 3167 4480 * * 4255 14 0 * * * * * * 4847 0 0 F 15 * * * * 984 * * * * * 4258 * * 4906 * * * 3569 * 1623 15 46 4989 * 0 * * * 4847 1000 0 I 16 4912 4873 * * * * * 1113 * 1427 4255 * * * * * * 4440 * * 16 273 2537 * 3469 137 * * 4847 2702 0 S 17 3493 * 3859 2794 * 5495 3565 * 4727 4812 * 4989 * 1794 * 2561 5123 * * * 17 42 5123 * 0 * * * 4847 1000 0 E 18 4014 * 4124 3092 * * 5952 * 2049 * 4813 3927 * 3024 5166 2149 * * 5159 * 18 206 2908 * 3729 113 * * 4878 2481 0 N 19 * * 4350 5999 * 3286 * * 1307 * * 2943 * 3284 3145 3593 * * * * 19 510 1749 * 3898 100 * * 4878 3642 0 Y 20 2768 * 5557 * 4193 3781 * * 5699 3300 5125 * 4995 * 3019 * 5172 4682 * 1584 20 38 5257 * 3585 126 * * 5194 1000 0 S 21 2168 * 3373 5448 * * * 5268 3836 * * 4403 1693 * * 3646 * 2993 * * 21 191 3013 * 3182 168 * * 5278 2408 0 T 22 * * 4151 * * * * * * 5273 * 5184 * * 3754 2193 743 * * * 22 0 * * * * * * 5455 0 0 T 23 1759 3940 * 4724 * * * 5243 * 1931 * * 5328 * * 4274 4455 2390 * * 23 174 3138 * 3670 118 * * 5455 2520 0 Q 24 4397 * 2607 2597 * * 3794 4784 3876 6037 * 3364 * 2795 5930 3118 4094 * * * 24 0 * * * * * * 5471 0 0 E 25 4023 5613 2230 1504 * 4940 5853 * * * 4793 * * 2704 5716 4504 4328 * * * 25 0 * * * * * * 5485 0 0 I 26 * * * * * * * 642 * 4749 4301 * * * * * 5588 1997 * * 26 0 * * * * * * 5485 0 0 L 27 2622 5092 * * * * 2370 3394 5519 3180 5479 5682 * 5124 4094 3941 3395 4816 5755 4500 27 0 * * * * * * 5485 0 0 E 28 5488 * 2596 2064 * * * * 3120 * * 3184 * 2848 2761 4631 5554 * * * 28 0 * * * * * * 5485 0 0 F 29 4350 * * * 1166 4793 5254 * 3832 5435 * * * * * 3830 * 4600 4121 2470 29 0 * * * * * * 5485 0 0 I 30 * * * * * * * 640 * 2393 * * * * * * * 2977 * 4615 30 0 * * * * * * 5506 0 0 T 31 6056 5772 * 5441 * * 4724 5434 2139 4824 * 2579 * 5191 2156 3630 3889 4238 * * 31 50 4883 * 2322 322 * * 5506 1000 0 A 32 3367 * 3577 3095 * 4498 5735 * 2459 4306 * 3260 * 4580 5637 2802 3750 5451 * * 32 69 4410 * 570 1616 * * 5506 1582 0 A 33 3078 * * 4148 * * * * 3237 3913 * 3062 * 3414 * 1861 2818 5500 * * 33 33 * 5451 * * * * 5506 0 0 Q 34 * * 3876 3345 * 1528 * 5227 3619 * * 2561 * 3753 4356 4857 4277 * * * 34 159 5213 3692 0 * * 0 5468 1000 1000 V 35 4356 * * * 4496 * * 1037 4821 2510 * * * * * 4767 * 2541 * * 35 25 5874 * 0 * 604 1547 5235 1000 2067 A 36 3062 3297 5233 * * 5158 * 4941 5197 3482 * * 4713 * * 2041 1769 * * * 36 70 5702 5158 0 * 0 * 5370 1000 1000 N 37 2866 * 5249 3492 * * 3797 * 3022 5600 * 2890 5435 4777 2953 2499 4987 * * * 37 0 * * * * * 0 5446 0 1000 V 38 3504 * * 4595 * 4958 * 3377 3978 * 5416 * * 4744 * 5650 2959 1091 * * 38 0 * * * * 0 * 5446 0 1000 E 39 5681 * 3237 1796 * 4791 3417 * 4084 * * 3541 4627 4877 4655 4246 2787 * * * 39 0 * * * * * * 5616 0 0 L 40 * 5210 * * * * 5007 2970 * 675 5032 * * * * * * 3656 * 3683 40 0 * * * * * * 5616 0 0 T 41 5118 * 4071 4043 * 2595 * * 4638 4955 * * * * 3794 1805 2082 5748 * * 41 0 * * * * * * 5616 0 0 P 42 5422 * 3501 2407 * * * 3538 4218 2809 5740 * 3233 5492 * 5383 4339 2347 * * 42 0 * * * * * * 5616 0 0 S 43 3699 * 2905 1372 * 4927 * * 4268 * 4582 3828 * 3627 4562 4356 * 4877 * * 43 0 * * * * * * 5616 0 0 N 44 * * 958 2043 * * 3384 * 4791 * * 4532 * 4454 * 5514 * * * * 44 0 * * * * * * 5616 0 0 I 45 4268 * * * 4066 * * 1417 * 3011 3915 * * * * * 5748 1713 * * 45 0 * * * * * * 5616 0 0 R 46 3933 * 4582 1979 * 5007 * 4941 3701 3511 6103 * * 2381 2455 * 5514 * * * 46 0 * * * * * * 5616 0 0 S 47 3590 5032 3895 4454 * * * 4105 5017 * 5847 * * 2182 4065 1910 3436 5128 * * 47 0 * * * * * * 5616 0 0 L 48 * * * * * * * 1334 * 1215 * * * * * * * 2536 * * 48 0 * * * * * * 5616 0 0 C 49 5475 3651 * * * * * 2179 * 1156 5800 5748 * * * * * 2382 * * 49 0 * * * * * * 5616 0 0 E 50 * * 2098 2145 * 5128 5636 * 3582 * 5480 2397 * 4273 4105 4877 4268 * * * 50 0 * * * * * * 5616 0 0 V 51 3217 * * * * * * 3406 * 3028 3573 5748 * * 5622 5007 1955 1923 * * 51 0 * * * * * * 5616 0 0 L 52 4265 * * * * * * * * 355 3117 * * * * * * 4295 * * 52 0 * * * * * * 5616 0 0 V 53 * 4701 * 4277 * * * 1810 3790 4152 5681 * * * * * * 1127 * 5725 53 0 * * * * * * 5616 0 0 Y 54 4163 * * * 2854 * 4268 * * 1985 * * * * * * * 4840 * 1100 54 0 * * * * * * 5616 0 0 D 55 * * 316 3153 * 5026 * * * * * * * * * 4218 * * * * 55 0 * * * * * * 5604 0 0 D 56 * * 2866 3509 * 1125 * * 3465 4798 * 3419 * 5468 4961 4575 * * * * 56 27 5769 * 2000 415 * * 5600 1000 0 K 57 5106 * 4533 4095 4058 * * 4575 1658 3714 * 5097 * 4671 2193 * 5755 3865 * * 57 0 * * * * * * 5600 0 0 L 58 5097 * * * * * * 1358 * 2066 * * * * * * * 1549 * * 58 69 4427 * 3885 101 * * 5600 1584 0 E 59 * * 5458 522 * * * 2922 * * 4430 5769 * * * * * 4277 * 4935 59 0 * * * * * * 5600 0 0 K 60 4702 4806 * 1824 * * * * 1797 * 5660 * 5702 * 2481 3173 5237 * * * 60 54 4765 * 1000 1000 * * 5489 1000 0 V 61 * 5393 5508 3764 * * * 2717 * 3897 4088 * * * 3394 * 2553 1568 * * 61 93 4007 * 2430 296 * * 5688 1963 0 T 62 2761 * * 4291 * 4190 * 4233 2362 4010 5433 3338 4560 * 3162 3149 5606 * * 5188 62 47 4974 * 2000 415 * * 5516 1000 0 H 63 4215 * 2415 * * 2265 5606 5298 3983 * * 3620 * * * 2322 4016 3840 * 5138 63 115 3702 * 3725 113 * * 5516 2084 0 D 64 3564 * 3054 * 4974 1611 * * * 5288 * 2598 * 3898 * 4291 2978 * * * 64 521 1850 5275 2845 216 * * 5516 3130 0 C 65 5147 2323 4407 4052 4245 4282 5114 4024 4013 5047 2960 3902 * * * 4452 3694 4071 * * 65 139 3442 * 2866 213 0 * 5176 2004 1000 Y 66 * * * 5202 2426 * * 5044 * 4051 * * * * 5279 4415 * * * 682 66 108 3794 * 3972 95 * * 5189 1618 0 R 67 * * * * * * * 4415 2468 * * 4151 * * 482 * * * * * 67 259 2604 * 3450 138 * * 5189 2402 0 V 68 1363 * * * * 4989 * * * 3942 * * 2654 * * 4058 4823 2853 * 3034 68 46 4996 * 3170 170 * * 5189 1000 0 T 69 2959 * * * * * * 2907 * 2582 4981 * * * * * 1636 2200 * * 69 142 3415 * 4026 91 * * 5080 2048 0 L 70 * * * * * 5090 * * 4110 2913 * 2888 * * 4216 2882 2193 3939 2543 * 70 122 3620 * 4279 76 * * 5080 1895 0 E 71 3491 * * 1869 * 4851 5407 * 2998 3811 * 5359 * 3936 5231 2648 4157 * * 4301 71 142 3417 * 3915 99 * * 4968 2109 0 S 72 2455 * * * * 2972 * * 4927 3689 * * 3474 * * 1991 3466 2758 * * 72 547 1665 * 3468 137 * * 4968 3207 0 I 73 * * * * * * * 3312 * * * * 294 * * * * 3580 * * 73 0 * * * * * * 4968 0 0 L 74 * 213 * * * * * 3940 * 3798 * * * * * * * * * * 74 0 * * * * * * 4967 0 0 Q 75 4616 3439 3940 4898 4078 876 * 4515 * * * * * 3483 * 5013 * * * * 75 0 * * * * * * 4967 0 0 M 76 3694 * * * * 4071 4081 3403 2486 5029 4705 3033 * 5048 4299 5207 3607 2739 * * 76 0 * * * * * * 4967 0 0 F 77 * 213 * * 4705 3341 * * * * * * * * * * * * * * 77 0 * * * * * * 4967 0 0 N 78 * * 4085 * * * * * * * * 3112 277 * * * * * * * 78 0 * * * * * * 4920 0 0 Y 79 * * * * * * 3706 * * 4106 * * * * 4930 6129 * 442 * 3606 79 0 * * * * * * 4352 0 0 F 80 3525 * * * 1023 * * 2581 * 3969 * 5212 * * * 3822 * 3900 * 5306 80 0 * * * * * * 4352 0 0 K 81 4726 * 1809 4177 * 5185 3813 * 2445 * 4074 2776 * * * 4484 4312 * * 4685 81 0 * * * * * * 4352 0 0 M 82 * * 3889 2647 5177 * * 3313 * 3468 3219 4623 * 2201 5331 4074 * 3259 * * 82 0 * * * * * * 4352 0 0 F 83 * 124 * * 3606 * * * * * * * * * * * * * * * 83 0 * * * * * * 4352 0 0 P 84 3987 * 5263 3427 * 3818 3140 * 3954 * * * 3606 4269 3899 2242 5032 3722 * 4312 84 0 * * * * * * 4352 0 0 A 85 2743 * 3131 2473 * * * * * 4049 * 4589 1393 * * * * 3760 * * 85 0 * * * * * * 4339 0 0 S 86 * 4589 3647 3927 * 660 * * * * * 3364 * * * 3592 * * * * 86 0 * * * * * * 4339 0 0 K 87 * * * * * 585 * * 2802 * * 3632 * * * 3882 * * * 4595 87 1434 667 * 1000 1000 * * 4339 3934 0 H 88 * * * 4049 * * 3592 * * * * 3764 2141 * * 1047 3786 * * * 88 488 1800 * 1163 854 * * 4339 2620 0 D 89 3282 * 3034 * * * * * * * * * 367 * * * * * * * 89 0 * * * * * * 4339 0 0 K 90 * * * 1930 * * * 3861 2465 * 5186 * * 4595 2997 2308 4256 4676 * * 90 0 * * * * * * 4339 0 0 E 91 * * * 2451 * 6209 * * 3136 * * 3137 * 4624 4683 2661 1562 * * * 91 0 * * * * * * 4339 0 0 V 92 * 125 * * * * * * * * * * * * * * * 3592 * * 92 0 * * * * * * 4339 0 0 V 93 * * 4595 2518 * * * 4082 * 3130 * * 3608 * * 4676 4049 1220 * * 93 0 * * * * * * 4339 0 0 Y 94 * * * * 4230 * * * * * * * * * * * * * * 79 94 79 * 4230 * * * * 4339 0 0 F 95 * * * * 1218 * * 4577 * 2135 2515 * * * * * * * * 2993 95 0 * * * * * 0 4217 0 1000 D 96 * * 1968 5126 * 3979 * * 2704 * * 2572 * 2712 3836 4373 4063 * * * 96 0 * * * * 0 * 4217 0 1000 E 97 * * 3141 2043 * * * * 1685 * * 4595 4707 2335 5116 * 5239 * * * 97 0 * * * * * * 4339 0 0 W 98 * * * * * * * * * * * * * * * * * * 58 4656 98 0 * * 0 * * * 4237 0 0 //